Rmu_sc0004798.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004798.1
OG0000419
Physical Location & Seq
Reverse (-)
4478 .. 5384
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004798.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
atgttcccagctctgtttgctttagcagaagagctccatgaaaatggcaggccacagtttgaagaagttaatacacagcagagaccttatgttggaagatatctagtcaatgttcagagtgaacatcctcaagaacacaagctatggcttgttgaaaatggtttcgtccataatctatggactaaaacaaatgatgatctcaagggactaccccctatcattgtcaacatagtcaaaaatgtcagaaaaaatgactgtatgctgagactgaagttcagatctactccaccagaatggataaagaagacaaatggtgaagttgaatacatttctccatattatgtgagaattattcaaagaagatatcttcagcccgcctgtgttggatacaatggccagcctaattcaagcattccagggatgaaggccatgtctctggaatatatcaagaagatcatctctgaagatacaaagaataccttcctggcagcaggagaaaagacaattatcactgcttacgatcatcctgacgtcgttagtagtgaccttttcatatctcccacaagaaaggagatagattcgacactggcatgcttacagtgggttgaaaagcttgaaacagacaaccactacaagatgtatgttgatacagatgtcgaagataatgcaacaaccactcgcatggcccaggcagataacagctcgtttgtccttagccacaactcagaaacagataagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

248

Amino Acids

28.6

Weight (kDa)

5.83

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 534
AciI CCGC 1 cut(s) 375
AcoI YGGCCR 1 cut(s) 394
AcuI CTGAAG 3 cut(s) 290, 353, 483
AcyI GRCGYC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 7 cut(s) 62, 155, 323, 356, 408, 608, 617
AjnI CCWGG 3 cut(s) 415, 483, 687
AluBI AGCT 5 cut(s) 11, 34, 142, 613, 702
AluI AGCT 5 cut(s) 11, 34, 142, 613, 702
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 3 cut(s) 76, 259, 438
AoxI GGCC 4 cut(s) 50, 394, 426, 684
ApeKI GCWGC 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 685
AsuHPI GGTGA 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 500
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 3 cut(s) 417, 485, 689
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 76, 259, 438
BfaI CTAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 1 cut(s) 278
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 417, 485, 689
BmgT120I GGNCC 1 cut(s) 685
BmrFI CCNGG 3 cut(s) 417, 485, 689
BpiI GAAGAC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 114, 185
BsaHI GRCGYC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 416, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 591
BseBI CCWGG 3 cut(s) 417, 485, 689
BseDI CCNNGG 2 cut(s) 416, 687
BseGI GGATG 3 cut(s) 124, 426, 523
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 254, 738
BseNI ACTGG 1 cut(s) 591
BseXI GCAGC 1 cut(s) 500
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 4 cut(s) 52, 396, 428, 686
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 3 cut(s) 76, 259, 438
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 4 cut(s) 52, 396, 428, 686
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 4 cut(s) 196, 278, 453, 520
BspACI CCGC 1 cut(s) 375
BspANI GGCC 4 cut(s) 52, 396, 428, 686
BspCNI CTCAG 2 cut(s) 255, 737
BspQI GCTCTTC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 2 cut(s) 416, 687
BssMI GATC 4 cut(s) 196, 278, 453, 520
BssNI GRCGYC 1 cut(s) 531
Bst2UI CCWGG 3 cut(s) 417, 485, 689
Bst4CI ACNGT 3 cut(s) 57, 257, 600
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 50, 375, 398, 592
BstDEI CTNAG 3 cut(s) 263, 713, 724
BstF5I GGATG 3 cut(s) 124, 426, 523
BstKTI GATC 4 cut(s) 199, 281, 456, 523
BstMAI GTCTC 3 cut(s) 76, 259, 438
BstMBI GATC 4 cut(s) 196, 278, 453, 520
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 3 cut(s) 417, 485, 689
BstNSI RCATGY 2 cut(s) 594, 745
BstSCI CCNGG 3 cut(s) 415, 483, 687
BstV1I GCAGC 1 cut(s) 500
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 4 cut(s) 44, 294, 436, 682
BstYI RGATCY 1 cut(s) 278
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 4 cut(s) 52, 396, 428, 686
BtsCI GGATG 3 cut(s) 124, 426, 523
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 3 cut(s) 510, 584, 605
Cac8I GCNNGC 4 cut(s) 50, 375, 398, 592
Cfr13I GGNCC 1 cut(s) 685
CviAII CATG 5 cut(s) 38, 430, 591, 682, 742
DdeI CTNAG 3 cut(s) 263, 713, 724
DpnI GATC 4 cut(s) 198, 280, 455, 522
DpnII GATC 4 cut(s) 196, 278, 453, 520
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 2 cut(s) 101, 365
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 3 cut(s) 290, 353, 483
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 415, 483, 687
EcoRV GATATC 2 cut(s) 101, 365
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 5 cut(s) 41, 433, 594, 685, 745
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 1 cut(s) 219
FatI CATG 5 cut(s) 37, 429, 590, 681, 741
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 3 cut(s) 111, 433, 510
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 4 cut(s) 52, 396, 428, 686
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 5 cut(s) 41, 433, 594, 685, 745
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 1 cut(s) 578
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 122, 226
Hpy188I TCNGA 5 cut(s) 117, 245, 278, 463, 727
Hpy188III TCNNGA 4 cut(s) 131, 437, 448, 527
Hpy8I GTNNAC 2 cut(s) 122, 226
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 418, 490
HpyCH4III ACNGT 3 cut(s) 57, 257, 600
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 263, 713, 724
HpySE526I ACGT 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 5 cut(s) 41, 433, 594, 685, 745
Kzo9I GATC 4 cut(s) 196, 278, 453, 520
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 1 cut(s) 500
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 542
MalI GATC 4 cut(s) 198, 280, 455, 522
MboI GATC 4 cut(s) 196, 278, 453, 520
MboII GAAGA 9 cut(s) 41, 74, 108, 316, 359, 372, 463, 476, 671
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 3 cut(s) 348, 403, 504
MluNI TGGCCA 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 73, 364
MnlI CCTC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 4 cut(s) 42, 292, 589, 680
Msp20I TGGCCA 1 cut(s) 396
MspR9I CCNGG 3 cut(s) 417, 485, 689
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 3 cut(s) 417, 485, 689
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 4 cut(s) 196, 278, 453, 520
NlaIII CATG 5 cut(s) 41, 433, 594, 685, 745
NmuCI GTSAC 1 cut(s) 542
NspI RCATGY 2 cut(s) 594, 745
PaeI GCATGC 1 cut(s) 594
PciI ACATGT 1 cut(s) 741
PciSI GCTCTTC 1 cut(s) 24
PctI GAATGC 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 578
PkrI GCNGC 1 cut(s) 490
PscI ACATGT 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 3 cut(s) 415, 483, 687
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 3 cut(s) 415, 483, 687
PspPI GGNCC 1 cut(s) 685
PsuI RGATCY 1 cut(s) 278
RseI CAYNNNNRTG 4 cut(s) 42, 292, 589, 680
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 4 cut(s) 196, 278, 453, 520
Sau96I GGNCC 1 cut(s) 685
ScrFI CCNGG 3 cut(s) 417, 485, 689
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 13, 36, 88, 144, 482, 534, 549, 615, 704
SmiMI CAYNNNNRTG 4 cut(s) 42, 292, 589, 680
SmlI CTYRAG 2 cut(s) 129, 200
SmoI CTYRAG 2 cut(s) 129, 200
SphI GCATGC 1 cut(s) 594
Sse9I AATT 3 cut(s) 348, 403, 504
SsiI CCGC 1 cut(s) 375
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 415, 483, 687
TaaI ACNGT 3 cut(s) 57, 257, 600
TaiI ACGT 1 cut(s) 534
TaqI TCGA 2 cut(s) 581, 657
TasI AATT 3 cut(s) 348, 403, 504
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 3 cut(s) 517, 591, 605
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 3 cut(s) 54, 437, 541
TspRI CASTG 3 cut(s) 517, 591, 605
XceI RCATGY 2 cut(s) 594, 745
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 1 cut(s) 104
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.