Rmu_sc0002482.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002482.1
OG0000419
Physical Location & Seq
Reverse (-)
1943 .. 2731
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002482.1_g000001.1.cds

Sequence Viewer

Length: 789 bp
atgaaaaaaattcagtatcttgaagatcctgagaatgctaaagttcctgttttagcagtaaacgaagcagattggttagactttcacaatctcattggaagtcacaactctgattcaggtcttcctccaaccctcttcattgtccctggaccttatgttggaagatatgcaatcaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctttggacaaaaaccaatgaagatctcaagggtttgccacctatcatagttaacactgtcaagaatgtcaggaaatatgactgcattcttaggttgaaattcagatctactccactagaatggattcagaagaaaaatggtgaagttgagtatatttctctatatcattatgtgagaattattcaaggaagatatcttcagcctgtgtgtgtaggatataatggccaaccaaattccaacatcccttggatgaaggctgtgtcccaggaatatatcaagaagatcattgaagaagatacagaaaatacattcctggcagcaggagaaaaaattattgttactgcttatgacctttctgaagttattagcagcgaccttttcctatctctcaaaagaaaagagatagactccacgttagcatgtctacagtggatcgagaagcttgaaaatgataaccactataagatgtatgaagatacagacgtagaggaaaatggaactaaagcaaggatggaaagcaactcttttgacctttgccacaattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

262

Amino Acids

30.29

Weight (kDa)

5.43

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 664
AclWI GGATC 2 cut(s) 20, 680
AcoI YGGCCR 1 cut(s) 463
AcsI RAATTY 3 cut(s) 9, 338, 472
AcuI CTGAAG 2 cut(s) 422, 618
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 23, 221, 337, 425, 530, 686
AjnI CCWGG 3 cut(s) 145, 504, 552
AluBI AGCT 2 cut(s) 208, 682
AluI AGCT 2 cut(s) 208, 682
AlwI GGATC 2 cut(s) 20, 680
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 557, 609
ApoI RAATTY 3 cut(s) 9, 338, 472
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 149
BaeI ACNNNNGTAYC 2 cut(s) 708, 741
BalI TGGCCA 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 569, 621
BccI CCATC 1 cut(s) 745
BciT130I CCWGG 3 cut(s) 147, 506, 554
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 665
BglII AGATCT 2 cut(s) 262, 344
BisI GCNGC 2 cut(s) 558, 610
BlsI GCNGC 2 cut(s) 559, 611
Bme1390I CCNGG 3 cut(s) 147, 506, 554
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 3 cut(s) 147, 506, 554
BpiI GAAGAC 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpuEI CTTGAG 2 cut(s) 180, 251
BsaJI CCNNGG 3 cut(s) 145, 485, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseBI CCWGG 3 cut(s) 147, 506, 554
BseDI CCNNGG 3 cut(s) 145, 485, 504
BseGI GGATG 4 cut(s) 190, 480, 495, 756
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 569, 621
BshFI GGCC 1 cut(s) 465
BslFI GGGAC 2 cut(s) 128, 487
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 128, 487
BsmI GAATGC 2 cut(s) 40, 324
BsnI GGCC 1 cut(s) 465
Bsp143I GATC 5 cut(s) 25, 262, 344, 522, 672
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 2 cut(s) 20, 680
BssECI CCNNGG 3 cut(s) 145, 485, 504
BssMI GATC 5 cut(s) 25, 262, 344, 522, 672
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 3 cut(s) 147, 506, 554
Bst4CI ACNGT 2 cut(s) 298, 669
Bst6I CTCTTC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 30, 329
BstF5I GGATG 4 cut(s) 190, 480, 495, 756
BstKTI GATC 5 cut(s) 28, 265, 347, 525, 675
BstMBI GATC 5 cut(s) 25, 262, 344, 522, 672
BstNI CCWGG 3 cut(s) 147, 506, 554
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 3 cut(s) 145, 504, 552
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 2 cut(s) 569, 621
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 3 cut(s) 25, 262, 344
BstXI CCANNNNNNTGG 1 cut(s) 360
BstYI RGATCY 3 cut(s) 25, 262, 344
BsuRI GGCC 1 cut(s) 465
BtsCI GGATG 4 cut(s) 190, 480, 495, 756
BtsIMutI CAGTG 2 cut(s) 294, 674
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 1 cut(s) 660
CviJI RGCY 6 cut(s) 208, 214, 442, 465, 497, 682
CviKI_1 RGCY 6 cut(s) 208, 214, 442, 465, 497, 682
DdeI CTNAG 2 cut(s) 30, 329
DpnI GATC 5 cut(s) 27, 264, 346, 524, 674
DpnII GATC 5 cut(s) 25, 262, 344, 522, 672
EaeI YGGCCR 1 cut(s) 463
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 485
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 422, 618
EcoRII CCWGG 3 cut(s) 145, 504, 552
EcoRV GATATC 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 1 cut(s) 663
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FaqI GGGAC 2 cut(s) 128, 487
FatI CATG 1 cut(s) 659
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 558, 610
FokI GGATG 4 cut(s) 177, 467, 502, 763
Fsp4HI GCNGC 2 cut(s) 558, 610
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 558, 610
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 1 cut(s) 663
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 206, 680
HinfI GANTC 3 cut(s) 113, 364, 647
HpaI GTTAAC 1 cut(s) 292
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 4 cut(s) 61, 188, 292, 665
Hpy188I TCNGA 5 cut(s) 112, 183, 344, 369, 598
Hpy188III TCNNGA 7 cut(s) 20, 29, 197, 301, 310, 517, 676
Hpy8I GTNNAC 4 cut(s) 61, 188, 292, 665
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 298, 669
HpyCH4IV ACGT 2 cut(s) 653, 723
HpyCH4V TGCA 2 cut(s) 170, 324
HpyF3I CTNAG 2 cut(s) 30, 329
HpySE526I ACGT 2 cut(s) 653, 723
Hsp92II CATG 1 cut(s) 663
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 5 cut(s) 25, 262, 344, 522, 672
Lsp1109I GCAGC 2 cut(s) 569, 621
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 653, 723
MaeIII GTNAC 2 cut(s) 101, 577
MalI GATC 5 cut(s) 27, 264, 346, 524, 674
MboI GATC 5 cut(s) 25, 262, 344, 522, 672
MflI RGATCY 3 cut(s) 25, 262, 344
MlsI TGGCCA 1 cut(s) 465
MluCI AATT 6 cut(s) 9, 338, 417, 472, 570, 781
MluNI TGGCCA 1 cut(s) 465
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 3 cut(s) 139, 152, 501
MnlI CCTC 4 cut(s) 135, 143, 204, 721
Mox20I TGGCCA 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 465
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 358
Msp20I TGGCCA 1 cut(s) 465
MspR9I CCNGG 3 cut(s) 147, 506, 554
Mva1269I GAATGC 2 cut(s) 40, 324
MvaI CCWGG 3 cut(s) 147, 506, 554
NdeII GATC 5 cut(s) 25, 262, 344, 522, 672
NlaIII CATG 1 cut(s) 663
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 663
PctI GAATGC 2 cut(s) 40, 324
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 113, 364
PkrI GCNGC 2 cut(s) 559, 611
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 3 cut(s) 145, 504, 552
PspGI CCWGG 3 cut(s) 145, 504, 552
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 3 cut(s) 25, 262, 344
RseI CAYNNNNRTG 1 cut(s) 358
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 558, 610
Sau3AI GATC 5 cut(s) 25, 262, 344, 522, 672
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 147, 506, 554
SfcI CTRYAG 1 cut(s) 665
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 358
SmlI CTYRAG 2 cut(s) 195, 266
SmoI CTYRAG 2 cut(s) 195, 266
Sse9I AATT 6 cut(s) 9, 338, 417, 472, 570, 781
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 145, 504, 552
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 2 cut(s) 298, 669
TaiI ACGT 2 cut(s) 656, 726
TaqI TCGA 1 cut(s) 675
TasI AATT 6 cut(s) 9, 338, 417, 472, 570, 781
TfiI GAWTC 2 cut(s) 113, 364
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 301, 674
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 557, 609
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 6 cut(s) 17, 127, 273, 506, 726, 774
TspRI CASTG 2 cut(s) 301, 674
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 3 cut(s) 9, 338, 472
XceI RCATGY 1 cut(s) 663
XmiI GTMKAC 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.