Rmu_sc0001785.1_g000018

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001785.1
OG0000419
Physical Location & Seq
Reverse (-)
66996 .. 67709
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001785.1_g000018.1.cds

Sequence Viewer

Length: 714 bp
atgattggaagccataattctgaaacctgtattcgtccaaccctcttcattgttgcaggaccttatgttggaagatacagagttaatgttcagagtgaacatcctcaagaatacaagttttggcttattgaaaatggttttgtccataatctatggaccaaaacaaatgatgatctcaaaggcctaccccttatcatcgtcaacacagtcaaaaatgactgtacatttagactgaagttcagatctactccaccagaatggattcttagaacaaacggtgaagttgaatacatttctccctatcattatgtgagaattattcaaaaaagatatcttcagcccacctgtgttggatacaatggccagccaaattcaagtattccatggatgaaggccatgtctcttgaatacatcacgaaaatcatccaagaagatacaagaaatactttcctggtagcaggagaaaaaacaataatcactgcttatgatcatcctgaagtaatcagcagtgacctcttcatatctctcacaagaaaaaaaatagactcgacactggcatgcttacagtgggttgaaaatcttgaaaatgacaaccactacaagatgtatgtagatacatatgtcgaggaaaatgcaactactgccagaatggctaggatggacagcaactcctttgtcctcggccacaactcagaaacagtagagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

237

Amino Acids

27.54

Weight (kDa)

6.17

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 361, 682
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 3 cut(s) 254, 320, 516
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 7 cut(s) 131, 287, 323, 375, 407, 575, 584
AjnI CCWGG 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 4 cut(s) 181, 361, 393, 682
ApoI RAATTY 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 59, 156
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 59, 156
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BalI TGGCCA 1 cut(s) 363
BccI CCATC 1 cut(s) 652
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 654
BfuI GTATCC 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 650
BglII AGATCT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 2 cut(s) 59, 156
BmgT120I GGNCC 2 cut(s) 59, 156
BmrFI CCNGG 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 383, 679
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 383, 679
BseGI GGATG 5 cut(s) 100, 393, 423, 490, 663
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 1 cut(s) 558
BshFI GGCC 4 cut(s) 183, 363, 395, 684
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 405
BsnI GGCC 4 cut(s) 183, 363, 395, 684
Bsp1407I TGTACA 1 cut(s) 221
Bsp143I GATC 3 cut(s) 172, 242, 487
Bsp19I CCATGG 1 cut(s) 383
BspANI GGCC 4 cut(s) 183, 363, 395, 684
BspCNI CTCAG 1 cut(s) 704
BsrGI TGTACA 1 cut(s) 221
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 2 cut(s) 383, 679
BssMI GATC 3 cut(s) 172, 242, 487
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 5 cut(s) 208, 221, 278, 567, 700
Bst6I CTCTTC 2 cut(s) 50, 521
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 365, 559
BstDEI CTNAG 2 cut(s) 266, 691
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 5 cut(s) 100, 393, 423, 490, 663
BstKTI GATC 3 cut(s) 175, 245, 490
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 3 cut(s) 172, 242, 487
BstMWI GCNNNNNNNGC 2 cut(s) 641, 650
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 561, 712
BstSCI CCNGG 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 258
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 4 cut(s) 183, 363, 395, 684
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 5 cut(s) 100, 393, 423, 490, 663
BtsI GCAGTG 2 cut(s) 477, 514
BtsIMutI CAGTG 4 cut(s) 477, 514, 551, 572
Cac8I GCNNGC 2 cut(s) 365, 559
Cfr13I GGNCC 2 cut(s) 59, 156
Csp6I GTAC 1 cut(s) 222
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 384, 397, 558, 709
CviJI RGCY 9 cut(s) 12, 124, 183, 340, 363, 367, 395, 653, 684
CviKI_1 RGCY 9 cut(s) 12, 124, 183, 340, 363, 367, 395, 653, 684
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 266, 691
DpnI GATC 3 cut(s) 174, 244, 489
DpnII GATC 3 cut(s) 172, 242, 487
EaeI YGGCCR 2 cut(s) 361, 682
Eam1104I CTCTTC 2 cut(s) 50, 521
EarI CTCTTC 2 cut(s) 50, 521
Eco130I CCWWGG 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 183
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 59, 156
Eco57I CTGAAG 3 cut(s) 254, 320, 516
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 4 cut(s) 387, 400, 561, 712
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FatI CATG 4 cut(s) 383, 396, 557, 708
FauNDI CATATG 1 cut(s) 619
FbaI TGATCA 1 cut(s) 487
FokI GGATG 5 cut(s) 87, 400, 410, 477, 670
FspBI CTAG 1 cut(s) 654
HaeIII GGCC 4 cut(s) 183, 363, 395, 684
Hin1II CATG 4 cut(s) 387, 400, 561, 712
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 262, 545
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 98, 202
Hpy188I TCNGA 4 cut(s) 22, 93, 242, 694
Hpy188III TCNNGA 5 cut(s) 107, 404, 415, 494, 581
Hpy8I GTNNAC 2 cut(s) 98, 202
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 5 cut(s) 208, 221, 278, 567, 700
HpyCH4V TGCA 2 cut(s) 56, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 641, 650
HpyF3I CTNAG 2 cut(s) 266, 691
Hsp92II CATG 4 cut(s) 387, 400, 561, 712
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 3 cut(s) 172, 242, 487
MaeI CTAG 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 174, 244, 489
MboI GATC 3 cut(s) 172, 242, 487
MboII GAAGA 5 cut(s) 37, 84, 326, 443, 508
MflI RGATCY 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 3 cut(s) 16, 315, 370
MluNI TGGCCA 1 cut(s) 363
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 3 cut(s) 49, 62, 331
MnlI CCTC 5 cut(s) 53, 114, 524, 619, 689
Mox20I TGGCCA 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 363
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 256, 556
Msp20I TGGCCA 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 641, 650
NcoI CCATGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 619
NdeII GATC 3 cut(s) 172, 242, 487
NlaIII CATG 4 cut(s) 387, 400, 561, 712
NmeAIII GCCGAG 1 cut(s) 660
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 561, 712
PaeI GCATGC 1 cut(s) 561
PceI AGGCCT 1 cut(s) 183
PciI ACATGT 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 59
PscI ACATGT 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 2 cut(s) 59, 156
PspPPI RGGWCCY 1 cut(s) 59
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 256, 556
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 3 cut(s) 172, 242, 487
Sau96I GGNCC 2 cut(s) 59, 156
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 1 cut(s) 452
SetI ASST 4 cut(s) 29, 64, 347, 516
SinI GGWCC 2 cut(s) 59, 156
SmiMI CAYNNNNRTG 2 cut(s) 256, 556
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
SphI GCATGC 1 cut(s) 561
Sse9I AATT 3 cut(s) 16, 315, 370
SseBI AGGCCT 1 cut(s) 183
SspMI CTAG 1 cut(s) 654
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 5 cut(s) 208, 221, 278, 567, 700
TaqI TCGA 2 cut(s) 548, 624
TasI AATT 3 cut(s) 16, 315, 370
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 4 cut(s) 484, 514, 558, 572
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 3 cut(s) 37, 404, 508
TspRI CASTG 4 cut(s) 484, 514, 558, 572
VpaK11BI GGWCC 2 cut(s) 59, 156
XapI RAATTY 1 cut(s) 370
XceI RCATGY 2 cut(s) 561, 712
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.