Rmu_sc0000365.1_g000035

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000365.1
OG0000419
Physical Location & Seq
Reverse (-)
123354 .. 123788
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000365.1_g000035.1.cds

Sequence Viewer

Length: 435 bp
atgctgagactgaagttcagatccactccgctagaatggtttccgaaaacaaacggtgaagttgaatatatttctccgtatcattatctaagaatcattcaaagaagatatcttcagcttgcctgtgttgcttacaatggccagccaaattcaagcattccatggatgaaggccatgtcactggagtacataaaaaagatcatctctgaagactccaagaatactttcctggcagcaggagtaaaactaattatcactgcttacgatcatcctgacgttgtcagcagtgaccttttcctatctctcacaagaaaggagatagactcgacgctggcatgcttacagtgggttgaaaagcttgaaacagacaatcactacaagatgtatgttgatacagatgttgaagataatgcaacaactgctcgtatggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

144

Amino Acids

16.73

Weight (kDa)

6.29

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 3 cut(s) 32, 98, 228
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 6 cut(s) 65, 101, 153, 353, 362, 404
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 118, 358
AluI AGCT 2 cut(s) 118, 358
AlwI GGATC 1 cut(s) 15
AoxI GGCC 3 cut(s) 139, 171, 429
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 2 cut(s) 39, 224
AsuHPI GGTGA 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BalI TGGCCA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 230
BfaI CTAG 2 cut(s) 32, 433
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 171, 268
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 3 cut(s) 141, 173, 431
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 3 cut(s) 141, 173, 431
Bsp143I GATC 3 cut(s) 20, 198, 265
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 29
BspANI GGCC 3 cut(s) 141, 173, 431
BspPI GGATC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 20, 198, 265
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 56, 345
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 4 cut(s) 120, 143, 333, 337
BstDEI CTNAG 2 cut(s) 5, 89
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 171, 268
BstKTI GATC 3 cut(s) 23, 201, 268
BstMBI GATC 3 cut(s) 20, 198, 265
BstMWI GCNNNNNNNGC 3 cut(s) 128, 419, 428
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 20
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 3 cut(s) 141, 173, 431
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 171, 268
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 4 cut(s) 179, 255, 292, 350
Cac8I GCNNGC 4 cut(s) 120, 143, 333, 337
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 162, 175, 336
CviJI RGCY 6 cut(s) 118, 141, 145, 173, 358, 431
CviKI_1 RGCY 6 cut(s) 118, 141, 145, 173, 358, 431
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 5, 89
DpnI GATC 3 cut(s) 22, 200, 267
DpnII GATC 3 cut(s) 20, 198, 265
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 161
Eco32I GATATC 1 cut(s) 110
Eco57I CTGAAG 3 cut(s) 32, 98, 228
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 165, 178, 339
FaiI YATR 7 cut(s) 69, 163, 176, 191, 337, 387, 428
FatI CATG 3 cut(s) 161, 174, 335
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 178, 255
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 32, 433
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 3 cut(s) 141, 173, 431
HgaI GACGC 1 cut(s) 337
Hin1II CATG 3 cut(s) 165, 178, 339
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 3 cut(s) 93, 212, 323
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 20, 45, 208
Hpy188III TCNNGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 56, 345
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 419, 428
HpyF3I CTNAG 2 cut(s) 5, 89
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 165, 178, 339
Kzo9I GATC 3 cut(s) 20, 198, 265
LpnPI CCDG 8 cut(s) 136, 155, 167, 215, 222, 242, 285, 317
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 2 cut(s) 32, 433
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 177, 287
MalI GATC 3 cut(s) 22, 200, 267
MboI GATC 3 cut(s) 20, 198, 265
MboII GAAGA 4 cut(s) 104, 117, 221, 416
MflI RGATCY 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 148, 249
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 2 cut(s) 206, 317
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 2 cut(s) 39, 224
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 128, 419, 428
NcoI CCATGG 1 cut(s) 161
NdeII GATC 3 cut(s) 20, 198, 265
NlaIII CATG 3 cut(s) 165, 178, 339
NmuCI GTSAC 2 cut(s) 177, 287
NspI RCATGY 1 cut(s) 339
PaeI GCATGC 1 cut(s) 339
PctI GAATGC 1 cut(s) 156
PdmI GAANNNNTTC 2 cut(s) 39, 224
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 206, 317
PpsI GAGTC 2 cut(s) 206, 317
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 20, 198, 265
SchI GAGTC 2 cut(s) 206, 317
ScrFI CCNGG 1 cut(s) 230
SetI ASST 4 cut(s) 120, 279, 294, 360
SphI GCATGC 1 cut(s) 339
Sse9I AATT 2 cut(s) 148, 249
SsiI CCGC 1 cut(s) 29
SspMI CTAG 2 cut(s) 32, 433
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 56, 345
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 326
TasI AATT 2 cut(s) 148, 249
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 4 cut(s) 186, 262, 292, 350
TseFI GTSAC 2 cut(s) 177, 287
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 177, 287
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 4 cut(s) 186, 262, 292, 350
Tth111I GACNNNGTC 1 cut(s) 278
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 339
XmnI GAANNNNTTC 2 cut(s) 39, 224
XspI CTAG 2 cut(s) 32, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.