Rmu_sc0003693.1_g000008

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
OG0000419
Physical Location & Seq
Reverse (-)
33259 .. 34551
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000008.1.cds

Sequence Viewer

Length: 873 bp
atgttcagccaaagagatgacgacgaaggtcgactagccacaactgatcaatcccagggtaaaggattggctagcccgtcccaaacggcaaacggtaaaggttcatcaagaccgttgacggctgctgctttgccaaaaagcagaccaactctaactggagttataaatgttttcaattatgaattaataacttttgatactcctgtgttcagaactggcaggagactagcttatcaccagaaggcaatcctggataatcttttgtttgcgtttcaagaaagaagcagtggtctaatgttcccagctctctttgcactagctgaagaactctatgaaaatgctaggccacagtttgaagaaattcatacacatcagagtgctataagaaaagaaaaaattcacttccttgaaagtcctgaaagtgctaggaaggcaaacggtgaagttgaatatattcctccatatcattatgtgagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcatcccctggatgaaggccatgactctagaatacatcaagaagatgatctctgaagatatccacaatgcattcctggcaggagagaaaactattatcactgcttacgatcatcctgacgtaatcagtagtgacctgttcctatgtcttaccaaaagggagatagattcgacactgacatgcttacagtgggtggaaaggcttgaaactgacaaccactacaagatgcatgttgatacagatgtcgaagataatgctaccactgttagaatggcccaggcagacaaaaactcctttgtctttggccacaacttagaaacagatgagaccatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

290

Amino Acids

32.97

Weight (kDa)

5.71

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccI GTMKAC 1 cut(s) 31
AcoI YGGCCR 2 cut(s) 523, 841
AcsI RAATTY 2 cut(s) 360, 396
AcuI CTGAAG 2 cut(s) 342, 612
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 8 cut(s) 175, 275, 356, 410, 449, 485, 500, 743
AjnI CCWGG 5 cut(s) 54, 249, 545, 612, 813
AluBI AGCT 3 cut(s) 230, 305, 320
AluI AGCT 3 cut(s) 230, 305, 320
Alw26I GTCTC 2 cut(s) 217, 857
AoxI GGCC 5 cut(s) 344, 523, 555, 810, 841
ApeKI GCWGC 2 cut(s) 122, 125
ApoI RAATTY 2 cut(s) 360, 396
AseI ATTAAT 1 cut(s) 185
Asp700I GAANNNNTTC 3 cut(s) 360, 396, 453
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 2 cut(s) 227, 452
AsuNHI GCTAGC 1 cut(s) 71
BaeI ACNNNNGTAYC 4 cut(s) 189, 222, 765, 798
BalI TGGCCA 2 cut(s) 525, 843
BbvI GCAGC 2 cut(s) 109, 112
BceAI ACGGC 2 cut(s) 102, 135
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 5 cut(s) 56, 251, 547, 614, 815
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 217, 857
BfaI CTAG 7 cut(s) 35, 72, 227, 317, 342, 426, 566
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
Bme1390I CCNGG 5 cut(s) 56, 251, 547, 614, 815
BmgT120I GGNCC 1 cut(s) 811
BmrFI CCNGG 5 cut(s) 56, 251, 547, 614, 815
BmsI GCATC 2 cut(s) 549, 753
BmtI GCTAGC 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 857
BsaJI CCNNGG 4 cut(s) 54, 55, 545, 813
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 2 cut(s) 160, 220
BseBI CCWGG 5 cut(s) 56, 251, 547, 614, 815
BseDI CCNNGG 4 cut(s) 54, 55, 545, 813
BseGI GGATG 3 cut(s) 540, 555, 649
BseLI CCNNNNNNNGG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 160, 220
BseXI GCAGC 2 cut(s) 109, 112
BseYI CCCAGC 1 cut(s) 301
BshFI GGCC 5 cut(s) 346, 525, 557, 812, 843
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 2 cut(s) 217, 857
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 5 cut(s) 346, 525, 557, 812, 843
Bso31I GGTCTC 1 cut(s) 857
Bsp143I GATC 3 cut(s) 46, 585, 646
BspANI GGCC 5 cut(s) 346, 525, 557, 812, 843
BspOI GCTAGC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 857
BsrI ACTGG 2 cut(s) 160, 220
BssECI CCNNGG 4 cut(s) 54, 55, 545, 813
BssMI GATC 3 cut(s) 46, 585, 646
Bst2UI CCWGG 5 cut(s) 56, 251, 547, 614, 815
Bst4CI ACNGT 6 cut(s) 95, 114, 351, 440, 726, 802
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 850
BstF5I GGATG 3 cut(s) 540, 555, 649
BstKTI GATC 3 cut(s) 49, 588, 649
BstMAI GTCTC 2 cut(s) 217, 857
BstMBI GATC 3 cut(s) 46, 585, 646
BstMWI GCNNNNNNNGC 3 cut(s) 311, 431, 614
BstNI CCWGG 5 cut(s) 56, 251, 547, 614, 815
BstNSI RCATGY 2 cut(s) 720, 770
BstPAI GACNNNNGTC 1 cut(s) 27
BstSCI CCNGG 5 cut(s) 54, 249, 545, 612, 813
BstV1I GCAGC 2 cut(s) 109, 112
BsuRI GGCC 5 cut(s) 346, 525, 557, 812, 843
BtsCI GGATG 3 cut(s) 540, 555, 649
BtsI GCAGTG 2 cut(s) 292, 636
BtsIMutI CAGTG 5 cut(s) 292, 636, 710, 731, 798
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 1 cut(s) 517
CviAII CATG 4 cut(s) 559, 717, 767, 868
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 1 cut(s) 850
DpnI GATC 3 cut(s) 48, 587, 648
DpnII GATC 3 cut(s) 46, 585, 646
EaeI YGGCCR 2 cut(s) 523, 841
Eco31I GGTCTC 1 cut(s) 857
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 342, 612
EcoRII CCWGG 5 cut(s) 54, 249, 545, 612, 813
EcoRV GATATC 1 cut(s) 598
EcoT22I ATGCAT 2 cut(s) 610, 768
FaeI CATG 4 cut(s) 562, 720, 770, 871
FaqI GGGAC 1 cut(s) 64
FatI CATG 4 cut(s) 558, 716, 766, 867
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 3 cut(s) 527, 562, 636
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 7 cut(s) 35, 72, 227, 317, 342, 426, 566
GluI GCNGC 2 cut(s) 123, 126
GsaI CCCAGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 5 cut(s) 346, 525, 557, 812, 843
Hin1II CATG 4 cut(s) 562, 720, 770, 871
HincII GTYRAC 2 cut(s) 32, 117
HindII GTYRAC 2 cut(s) 32, 117
HinfI GANTC 2 cut(s) 562, 704
HphI GGTGA 2 cut(s) 227, 452
Hpy166II GTNNAC 2 cut(s) 32, 117
Hpy188I TCNGA 3 cut(s) 212, 375, 592
Hpy188III TCNNGA 6 cut(s) 108, 275, 416, 566, 577, 653
Hpy8I GTNNAC 2 cut(s) 32, 117
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 4 cut(s) 20, 235, 424, 547
HpyCH4III ACNGT 6 cut(s) 95, 114, 351, 440, 726, 802
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 3 cut(s) 314, 608, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 431, 614
HpyF3I CTNAG 1 cut(s) 850
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 4 cut(s) 562, 720, 770, 871
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 3 cut(s) 46, 585, 646
Lsp1109I GCAGC 2 cut(s) 109, 112
LweI GCATC 2 cut(s) 549, 753
MaeI CTAG 7 cut(s) 35, 72, 227, 317, 342, 426, 566
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 48, 587, 648
MboI GATC 3 cut(s) 46, 585, 646
MboII GAAGA 6 cut(s) 335, 368, 488, 592, 605, 797
MlsI TGGCCA 2 cut(s) 525, 843
MluCI AATT 5 cut(s) 175, 182, 360, 396, 477
MluNI TGGCCA 2 cut(s) 525, 843
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 1 cut(s) 468
Mox20I TGGCCA 2 cut(s) 525, 843
Mph1103I ATGCAT 2 cut(s) 610, 768
MroXI GAANNNNTTC 3 cut(s) 360, 396, 453
MscI TGGCCA 2 cut(s) 525, 843
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 375, 715
Msp20I TGGCCA 2 cut(s) 525, 843
MspR9I CCNGG 5 cut(s) 56, 251, 547, 614, 815
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 5 cut(s) 56, 251, 547, 614, 815
MwoI GCNNNNNNNGC 3 cut(s) 311, 431, 614
NdeII GATC 3 cut(s) 46, 585, 646
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 4 cut(s) 562, 720, 770, 871
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 2 cut(s) 610, 768
NspI RCATGY 2 cut(s) 720, 770
PasI CCCWGGG 1 cut(s) 55
PctI GAATGC 1 cut(s) 608
PdmI GAANNNNTTC 3 cut(s) 360, 396, 453
PfeI GAWTC 1 cut(s) 704
PfoI TCCNGGA 1 cut(s) 249
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PshAI GACNNNNGTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 185
PsiI TTATAA 1 cut(s) 164
Psp6I CCWGG 5 cut(s) 54, 249, 545, 612, 813
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 5 cut(s) 54, 249, 545, 612, 813
PspPI GGNCC 1 cut(s) 811
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 2 cut(s) 375, 715
SalI GTCGAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 3 cut(s) 46, 585, 646
Sau96I GGNCC 1 cut(s) 811
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 5 cut(s) 56, 251, 547, 614, 815
SetI ASST 7 cut(s) 31, 103, 232, 307, 322, 660, 675
SfaNI GCATC 2 cut(s) 549, 753
SmiMI CAYNNNNRTG 2 cut(s) 375, 715
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 5 cut(s) 175, 182, 360, 396, 477
SspMI CTAG 7 cut(s) 35, 72, 227, 317, 342, 426, 566
StyD4I CCNGG 5 cut(s) 54, 249, 545, 612, 813
TaaI ACNGT 6 cut(s) 95, 114, 351, 440, 726, 802
TaiI ACGT 1 cut(s) 660
TaqI TCGA 3 cut(s) 31, 707, 783
TasI AATT 5 cut(s) 175, 182, 360, 396, 477
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 5 cut(s) 292, 643, 717, 731, 805
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 2 cut(s) 122, 125
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 5 cut(s) 93, 195, 348, 353, 566
TspRI CASTG 5 cut(s) 292, 643, 717, 731, 805
VspI ATTAAT 1 cut(s) 185
XapI RAATTY 2 cut(s) 360, 396
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 2 cut(s) 720, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmiI GTMKAC 1 cut(s) 31
XmnI GAANNNNTTC 3 cut(s) 360, 396, 453
XspI CTAG 7 cut(s) 35, 72, 227, 317, 342, 426, 566
Zsp2I ATGCAT 2 cut(s) 610, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.