Rmu_sc0000239.1_g000008

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000239.1
OG0000419
Physical Location & Seq
Forward (+)
55760 .. 56606
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000239.1_g000008.1.cds

Sequence Viewer

Length: 744 bp
atgttcccagctctatttgcattagctgaagaactctacgaaaatggtagaccacaaggtgaagagcttcagacacagcagagtgctgaaggcataatcctgaaaaacctagttcctccaactctcttcatcgtcgcaggacattatgttggaagatacctagtaaatcttcagagtgaacatccccaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatctgaaaggtttgccacctattattgtcaacacagtcaaaaacataagaagaaatgactgcatgcttcgtctgaagttcagatccactcctctagaatggagtcagaaggcaaacggtgaggttgaatatattcctccatatcactatgtaagaattattcaaagaagatatcttcaaccagcctgtgtagcatataatggccaaccaaattctaacaataccttcctggcagcaggagaaaagacaatcatcactgcttacgatcatcctgacatagtcagcagtgacctattcctatctctaaccagaaaagagatagactcgacaatggcatgcatgcgctgggtggaaaagcttgaaaatgacaaccaccacaagatgtatgttgatacagatgtcgaggacaatgcaacaacaactcgcatggcccaggcagacaacaactcctttgtctttggccaccattctgaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

247

Amino Acids

28.43

Weight (kDa)

5.56

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 49
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 2 cut(s) 454, 712
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 5 cut(s) 48, 53, 108, 155, 347
AdeI CACNNNGTG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 5 cut(s) 212, 380, 416, 431, 614
AjnI CCWGG 2 cut(s) 480, 684
AluBI AGCT 5 cut(s) 11, 26, 67, 199, 610
AluI AGCT 5 cut(s) 11, 26, 67, 199, 610
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 454, 681, 712
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 463
Asp700I GAANNNNTTC 2 cut(s) 66, 384
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 71, 383
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 2 cut(s) 456, 714
BbvI GCAGC 1 cut(s) 497
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 2 cut(s) 482, 686
BfaI CTAG 3 cut(s) 110, 161, 347
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 482, 686
BmgT120I GGNCC 1 cut(s) 682
BmrFI CCNGG 2 cut(s) 482, 686
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BsaJI CCNNGG 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
BseBI CCWGG 2 cut(s) 482, 686
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 2 cut(s) 181, 520
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 497
BseYI CCCAGC 2 cut(s) 7, 597
BshFI GGCC 3 cut(s) 456, 683, 714
BsnI GGCC 3 cut(s) 456, 683, 714
Bsp143I GATC 3 cut(s) 253, 335, 517
BspANI GGCC 3 cut(s) 456, 683, 714
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 3 cut(s) 253, 335, 517
Bst2UI CCWGG 2 cut(s) 482, 686
Bst4CI ACNGT 2 cut(s) 289, 371
Bst6I CTCTTC 2 cut(s) 57, 131
BstC8I GCNNGC 3 cut(s) 317, 589, 593
BstF5I GGATG 2 cut(s) 181, 520
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 3 cut(s) 256, 338, 520
BstMBI GATC 3 cut(s) 253, 335, 517
BstMWI GCNNNNNNNGC 2 cut(s) 17, 443
BstNI CCWGG 2 cut(s) 482, 686
BstNSI RCATGY 4 cut(s) 319, 591, 595, 742
BstSCI CCNGG 2 cut(s) 480, 684
BstV1I GCAGC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 3 cut(s) 456, 683, 714
BtsCI GGATG 2 cut(s) 181, 520
BtsI GCAGTG 2 cut(s) 507, 544
BtsIMutI CAGTG 2 cut(s) 507, 544
Cac8I GCNNGC 3 cut(s) 317, 589, 593
CfoI GCGC 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 682
CviAII CATG 5 cut(s) 316, 588, 592, 679, 739
DpnI GATC 3 cut(s) 255, 337, 519
DpnII GATC 3 cut(s) 253, 335, 517
DraIII CACNNNGTG 1 cut(s) 59
EaeI YGGCCR 2 cut(s) 454, 712
Eam1104I CTCTTC 2 cut(s) 57, 131
EarI CTCTTC 2 cut(s) 57, 131
Eco32I GATATC 1 cut(s) 425
Eco57I CTGAAG 5 cut(s) 48, 53, 108, 155, 347
EcoRII CCWGG 2 cut(s) 480, 684
EcoRV GATATC 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 593
FaeI CATG 5 cut(s) 319, 591, 595, 682, 742
FatI CATG 5 cut(s) 315, 587, 591, 678, 738
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 2 cut(s) 168, 507
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 3 cut(s) 110, 161, 347
GlaI GCGC 1 cut(s) 596
GluI GCNGC 1 cut(s) 486
GsaI CCCAGC 2 cut(s) 11, 601
HaeIII GGCC 3 cut(s) 456, 683, 714
HhaI GCGC 1 cut(s) 597
Hin1II CATG 5 cut(s) 319, 591, 595, 682, 742
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 197, 608
HinfI GANTC 2 cut(s) 355, 575
HphI GGTGA 2 cut(s) 71, 383
Hpy166II GTNNAC 4 cut(s) 50, 179, 237, 283
Hpy188I TCNGA 7 cut(s) 72, 174, 258, 327, 335, 360, 724
Hpy188III TCNNGA 3 cut(s) 100, 347, 524
Hpy8I GTNNAC 4 cut(s) 50, 179, 237, 283
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 83, 355, 487
HpyCH4III ACNGT 2 cut(s) 289, 371
HpyCH4V TGCA 4 cut(s) 20, 315, 591, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 443
Hsp92II CATG 5 cut(s) 319, 591, 595, 682, 742
HspAI GCGC 1 cut(s) 595
Kzo9I GATC 3 cut(s) 253, 335, 517
LguI GCTCTTC 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 497
MaeI CTAG 3 cut(s) 110, 161, 347
MaeIII GTNAC 1 cut(s) 539
MalI GATC 3 cut(s) 255, 337, 519
MboI GATC 3 cut(s) 253, 335, 517
MboII GAAGA 8 cut(s) 41, 74, 118, 161, 165, 315, 419, 432
MflI RGATCY 1 cut(s) 335
MlsI TGGCCA 2 cut(s) 456, 714
MluCI AATT 2 cut(s) 408, 463
MluNI TGGCCA 2 cut(s) 456, 714
MlyI GAGTC 2 cut(s) 364, 569
MmeI TCCRAC 2 cut(s) 130, 143
MnlI CCTC 5 cut(s) 126, 354, 367, 399, 649
Mox20I TGGCCA 2 cut(s) 456, 714
Mph1103I ATGCAT 1 cut(s) 593
MroXI GAANNNNTTC 2 cut(s) 66, 384
MscI TGGCCA 2 cut(s) 456, 714
Msp20I TGGCCA 2 cut(s) 456, 714
MspR9I CCNGG 2 cut(s) 482, 686
MvaI CCWGG 2 cut(s) 482, 686
MwoI GCNNNNNNNGC 2 cut(s) 17, 443
NdeII GATC 3 cut(s) 253, 335, 517
NlaIII CATG 5 cut(s) 319, 591, 595, 682, 742
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 593
NspI RCATGY 4 cut(s) 319, 591, 595, 742
PaeI GCATGC 3 cut(s) 319, 591, 595
PciI ACATGT 1 cut(s) 738
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 2 cut(s) 66, 384
PflFI GACNNNGTC 1 cut(s) 530
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 2 cut(s) 363, 569
PpsI GAGTC 2 cut(s) 363, 569
PscI ACATGT 1 cut(s) 738
Psp6I CCWGG 2 cut(s) 480, 684
PspFI CCCAGC 2 cut(s) 7, 597
PspGI CCWGG 2 cut(s) 480, 684
PspPI GGNCC 1 cut(s) 682
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 3 cut(s) 253, 335, 517
Sau96I GGNCC 1 cut(s) 682
SchI GAGTC 2 cut(s) 364, 569
ScrFI CCNGG 2 cut(s) 482, 686
SphI GCATGC 3 cut(s) 319, 591, 595
Sse9I AATT 2 cut(s) 408, 463
SspMI CTAG 3 cut(s) 110, 161, 347
StyD4I CCNGG 2 cut(s) 480, 684
TaaI ACNGT 2 cut(s) 289, 371
TaqI TCGA 2 cut(s) 578, 654
TasI AATT 2 cut(s) 408, 463
TscAI CASTG 2 cut(s) 514, 544
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 2 cut(s) 514, 544
Tth111I GACNNNGTC 1 cut(s) 530
XapI RAATTY 1 cut(s) 463
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 4 cut(s) 319, 591, 595, 742
XmiI GTMKAC 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 66, 384
XspI CTAG 3 cut(s) 110, 161, 347
Zsp2I ATGCAT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.