Rroxscaffold_6G00395540

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000419
Physical Location & Seq
Forward (+)
16669502 .. 16675379
5878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395540.1

Sequence Viewer

Length: 486 bp
ATGTTCCCGACTTTTTTTGCGCTAGCCGAAGAACTTTATGAAAATGTCGTGCCACAATTTGAAGAAGTTCATGAAAATATGACACAACAGAGATCTACTCCTCCAAAGTGGATTCAGAAGAAAAATGACGAGGTTGACTATATTTCTCCATACCATTATGTGAGAATTATTCAAGGAAAATATCTTCACCCTACATGTGTTGGATATAATGGCGAACCAAACTCTAGTATTCCTTGGATGAAAGCCATGACTCTAGAATATATAAAGAAAATCATCGAAGAAGATACAGAAAATACATTCCTAGCAGCAAGAGAAAAAATTATTGTTACCGCTTATGACCATCCCGAGGTTATTAGCAATGACCTTTTTCTTTCCCTTAAAAGAAAGGAAATAGATTCCACGTTACTTTGCTTTCAGTGGATCGAAAAGATTGAAAATGACAACCACTACAAGATGTATGAAGATACAAACGTAGAAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

161

Amino Acids

19.18

Weight (kDa)

4.81

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 62, 173, 434
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 344
BaeI ACNNNNGTAYC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 348
BfaI CTAG 4 cut(s) 23, 225, 254, 302
BglII AGATCT 1 cut(s) 92
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 344
BmtI GCTAGC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BsaJI CCNNGG 2 cut(s) 233, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 233, 345
BseGI GGATG 2 cut(s) 243, 340
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 346
BsoBI CYCGRG 1 cut(s) 344
Bsp143I GATC 2 cut(s) 92, 420
BspACI CCGC 1 cut(s) 330
BspHI TCATGA 1 cut(s) 70
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 233, 345
BssMI GATC 2 cut(s) 92, 420
BssT1I CCWWGG 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 2 cut(s) 243, 340
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 95, 423
BstMBI GATC 2 cut(s) 92, 420
BstNSI RCATGY 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtsCI GGATG 2 cut(s) 243, 340
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 70
CfoI GCGC 1 cut(s) 22
CviAII CATG 3 cut(s) 71, 195, 247
CviJI RGCY 2 cut(s) 26, 245
CviKI_1 RGCY 2 cut(s) 26, 245
DpnI GATC 2 cut(s) 94, 422
DpnII GATC 2 cut(s) 92, 420
Eco130I CCWWGG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 74, 198, 250
FatI CATG 3 cut(s) 70, 194, 246
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 250, 327
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 4 cut(s) 23, 225, 254, 302
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 306
HhaI GCGC 1 cut(s) 22
Hin1II CATG 3 cut(s) 74, 198, 250
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 112, 250, 395
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 4 cut(s) 7, 71, 254, 344
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 401, 471
HpySE526I ACGT 2 cut(s) 401, 471
Hsp92II CATG 3 cut(s) 74, 198, 250
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 92, 420
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 4 cut(s) 23, 225, 254, 302
MaeII ACGT 2 cut(s) 401, 471
MaeIII GTNAC 2 cut(s) 325, 402
MalI GATC 2 cut(s) 94, 422
MboI GATC 2 cut(s) 92, 420
MboII GAAGA 7 cut(s) 41, 74, 130, 176, 290, 293, 473
MflI RGATCY 1 cut(s) 92
MluCI AATT 4 cut(s) 56, 165, 318, 481
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 111, 124, 340
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 378
NdeII GATC 2 cut(s) 92, 420
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 3 cut(s) 74, 198, 250
NspI RCATGY 1 cut(s) 198
PagI TCATGA 1 cut(s) 70
PciI ACATGT 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 112, 395
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PscI ACATGT 1 cut(s) 194
PsuI RGATCY 1 cut(s) 92
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 92, 420
SchI GAGTC 1 cut(s) 244
SetI ASST 5 cut(s) 135, 351, 366, 404, 474
Sse9I AATT 4 cut(s) 56, 165, 318, 481
SsiI CCGC 1 cut(s) 330
SspMI CTAG 4 cut(s) 23, 225, 254, 302
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 2 cut(s) 404, 474
TaqI TCGA 2 cut(s) 276, 423
TasI AATT 4 cut(s) 56, 165, 318, 481
TfiI GAWTC 2 cut(s) 112, 395
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 422
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 54, 59, 87, 254, 474
TspRI CASTG 1 cut(s) 422
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 23, 225, 254, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.