Rmu_sc0000976.1_g000012

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000976.1
OG0000419
Physical Location & Seq
Forward (+)
68917 .. 70224
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000976.1_g000012.1.cds

Sequence Viewer

Length: 1221 bp
atggcaatgtttagccaaagagaagacaacgaaggtcgtaatcctagaagcagaaggactgggaaagaacaggaacctgaagaggatcctaaagaaaccaaagaaaaaattaaaaggtttctgctaagtccaaaaggcttggcctcaactgatcaatctcagggtaaaggattggctagcctgtctcaaacggcagacggtaaaggaacatcaagaccgttgatggctgctgctttgccaaaaagcagaccaactccgagtggagttataaatgtttttaattatgaattaagaacttttgatactcatgtgttcagaactggcaggagactagcttatcaccagaaggcaatcctggataatctcttatttgcctttcaagaaagaagcagtggtctgatgttcccaactcttttcgcattagctgaagaactctacaaaaatagtaaaccacaaggtgaagagcttcacacacagcagagtgctgtaagagaagaaaaattttccttccttgaaagtccagaaagtgctagggtccctatcatggcactcaatgaatcagactggcatgaattccatagtctgataagtgaacatccccaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaactaatgatgatctaaaaggcttgccgcctattattgtcaacacagtcaagaacatcaggaaaagtgactgtatgcttcgtctgaagttcagattcactcctccagaatggatccagaagacaaacggtgaggttgaatatattcctccatatcattatgtgaaaattattcaaaaaatatatcttcaaccagcctgtgtagcatacaatggccaaccaaattctagcatcccttggatgaaggccatggctcttgactacatcaaaaagatcatctctgaagatatcaacaataccttcctggaagcaggagaaaaaatcattatcactgcatacgatcatcctgacgtagtcagcagtgacctattcctatctctcaccagaaaagagatagactcgactatggcatgcatgtgctgggtggaaaagcttgaaactgacaaccactacaaaatgtatgttgatacagacgtcgaggacaatgcaacaacaactcgcatggcccaagcagacaacaactcctttgtctttggccaccattctgaaacggacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

406

Amino Acids

46.59

Weight (kDa)

5.95

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AatII GACGTC 1 cut(s) 1131
AciI CCGC 1 cut(s) 683
AclWI GGATC 4 cut(s) 80, 93, 763, 776
AcoI YGGCCR 2 cut(s) 868, 1189
AcsI RAATTY 3 cut(s) 500, 572, 877
AcuI CTGAAG 4 cut(s) 99, 447, 761, 957
AcyI GRCGYC 1 cut(s) 1128
AdeI CACNNNGTG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 544
AflIII ACRYGT 1 cut(s) 1215
AgsI TTSAA 7 cut(s) 380, 515, 626, 794, 830, 845, 1091
AjnI CCWGG 2 cut(s) 354, 957
AluBI AGCT 5 cut(s) 335, 425, 466, 613, 1087
AluI AGCT 5 cut(s) 335, 425, 466, 613, 1087
Alw26I GTCTC 2 cut(s) 189, 322
AlwI GGATC 4 cut(s) 80, 93, 763, 776
AoxI GGCC 5 cut(s) 141, 868, 900, 1158, 1189
ApeKI GCWGC 2 cut(s) 227, 230
ApoI RAATTY 3 cut(s) 500, 572, 877
Asp700I GAANNNNTTC 2 cut(s) 465, 798
AspS9I GGNCC 2 cut(s) 535, 1159
AsuHPI GGTGA 4 cut(s) 332, 470, 797, 1027
AsuNHI GCTAGC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 535
BaeI ACNNNNGTAYC 4 cut(s) 294, 327, 1113, 1146
BalI TGGCCA 2 cut(s) 870, 1191
BamHI GGATCC 2 cut(s) 85, 768
BbsI GAAGAC 2 cut(s) 30, 782
BbvI GCAGC 2 cut(s) 214, 217
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 1121, 1155
BciT130I CCWGG 2 cut(s) 356, 959
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 189, 322
BfaI CTAG 5 cut(s) 45, 177, 332, 531, 882
BisI GCNGC 3 cut(s) 228, 231, 683
BlsI GCNGC 3 cut(s) 229, 232, 684
Bme1390I CCNGG 2 cut(s) 356, 959
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 2 cut(s) 535, 1159
BmiI GGNNCC 5 cut(s) 75, 87, 536, 537, 770
BmrFI CCNGG 2 cut(s) 356, 959
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 894
BmtI GCTAGC 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 30, 782
BplI GAGNNNNNCTC 2 cut(s) 1037, 1069
BpmI CTGGAG 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 1128
BsaJI CCNNGG 2 cut(s) 890, 903
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 64, 325, 569
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 356, 959
BseDI CCNNGG 2 cut(s) 890, 903
BseGI GGATG 4 cut(s) 595, 885, 900, 997
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 3 cut(s) 64, 325, 569
BseRI GAGGAG 1 cut(s) 747
BseXI GCAGC 2 cut(s) 214, 217
BseYI CCCAGC 1 cut(s) 1074
BshFI GGCC 5 cut(s) 143, 870, 902, 1160, 1191
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 2 cut(s) 189, 322
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 5 cut(s) 143, 870, 902, 1160, 1191
Bsp143I GATC 6 cut(s) 85, 151, 667, 768, 927, 994
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 1 cut(s) 683
BspANI GGCC 5 cut(s) 143, 870, 902, 1160, 1191
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 5 cut(s) 75, 87, 536, 537, 770
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 4 cut(s) 80, 93, 763, 776
BspQI GCTCTTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 64, 325, 569
BssECI CCNNGG 2 cut(s) 890, 903
BssMI GATC 6 cut(s) 85, 151, 667, 768, 927, 994
BssNI GRCGYC 1 cut(s) 1128
BssT1I CCWWGG 2 cut(s) 890, 903
Bst2UI CCWGG 2 cut(s) 356, 959
Bst4CI ACNGT 5 cut(s) 200, 219, 703, 728, 785
Bst6I CTCTTC 2 cut(s) 75, 456
BstACI GRCGYC 1 cut(s) 1128
BstC8I GCNNGC 3 cut(s) 178, 680, 1066
BstDEI CTNAG 2 cut(s) 125, 159
BstDSI CCRYGG 1 cut(s) 903
BstF5I GGATG 4 cut(s) 595, 885, 900, 997
BstKTI GATC 6 cut(s) 88, 154, 670, 771, 930, 997
BstMAI GTCTC 2 cut(s) 189, 322
BstMBI GATC 6 cut(s) 85, 151, 667, 768, 927, 994
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNI CCWGG 2 cut(s) 356, 959
BstNSI RCATGY 3 cut(s) 1068, 1072, 1219
BstSCI CCNGG 2 cut(s) 354, 957
BstV1I GCAGC 2 cut(s) 214, 217
BstV2I GAAGAC 2 cut(s) 30, 782
BstX2I RGATCY 2 cut(s) 85, 768
BstYI RGATCY 2 cut(s) 85, 768
BsuRI GGCC 5 cut(s) 143, 870, 902, 1160, 1191
BtgI CCRYGG 1 cut(s) 903
BtsCI GGATG 4 cut(s) 595, 885, 900, 997
BtsI GCAGTG 3 cut(s) 397, 984, 1021
BtsIMutI CAGTG 3 cut(s) 397, 984, 1021
Cac8I GCNNGC 3 cut(s) 178, 680, 1066
Cfr13I GGNCC 2 cut(s) 535, 1159
CviAII CATG 8 cut(s) 308, 544, 569, 904, 1065, 1069, 1156, 1216
DdeI CTNAG 2 cut(s) 125, 159
DpnI GATC 6 cut(s) 87, 153, 669, 770, 929, 996
DpnII GATC 6 cut(s) 85, 151, 667, 768, 927, 994
DraIII CACNNNGTG 1 cut(s) 458
EaeI YGGCCR 2 cut(s) 868, 1189
Eam1104I CTCTTC 2 cut(s) 75, 456
EarI CTCTTC 2 cut(s) 75, 456
Eco130I CCWWGG 2 cut(s) 890, 903
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 4 cut(s) 99, 447, 761, 957
EcoO109I RGGNCCY 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 354, 957
EcoRV GATATC 1 cut(s) 943
EcoT14I CCWWGG 2 cut(s) 890, 903
EcoT22I ATGCAT 1 cut(s) 1070
ErhI CCWWGG 2 cut(s) 890, 903
FaeI CATG 8 cut(s) 311, 547, 572, 907, 1068, 1072, 1159, 1219
FaqI GGGAC 1 cut(s) 521
FatI CATG 8 cut(s) 307, 543, 568, 903, 1064, 1068, 1155, 1215
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 228, 231, 683
FokI GGATG 4 cut(s) 582, 872, 907, 984
Fsp4HI GCNGC 3 cut(s) 228, 231, 683
FspBI CTAG 5 cut(s) 45, 177, 332, 531, 882
GluI GCNGC 3 cut(s) 228, 231, 683
GsaI CCCAGC 1 cut(s) 1078
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 5 cut(s) 143, 870, 902, 1160, 1191
Hin1I GRCGYC 1 cut(s) 1128
Hin1II CATG 8 cut(s) 311, 547, 572, 907, 1068, 1072, 1159, 1219
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 2 cut(s) 611, 1085
HinfI GANTC 3 cut(s) 557, 750, 1052
HphI GGTGA 4 cut(s) 332, 470, 797, 1027
Hpy166II GTNNAC 4 cut(s) 449, 593, 651, 697
Hpy188I TCNGA 9 cut(s) 258, 317, 399, 562, 585, 741, 749, 937, 1201
Hpy188III TCNNGA 9 cut(s) 213, 380, 521, 706, 715, 761, 772, 911, 1001
Hpy8I GTNNAC 4 cut(s) 449, 593, 651, 697
Hpy99I CGWCG 1 cut(s) 1133
HpyAV CCTTC 6 cut(s) 26, 48, 340, 517, 892, 964
HpyCH4III ACNGT 5 cut(s) 200, 219, 703, 728, 785
HpyCH4IV ACGT 2 cut(s) 1005, 1128
HpyCH4V TGCA 3 cut(s) 989, 1068, 1142
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 2 cut(s) 125, 159
HpySE526I ACGT 2 cut(s) 1005, 1128
Hsp92I GRCGYC 1 cut(s) 1128
Hsp92II CATG 8 cut(s) 311, 547, 572, 907, 1068, 1072, 1159, 1219
KflI GGGWCCC 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 6 cut(s) 85, 151, 667, 768, 927, 994
LguI GCTCTTC 1 cut(s) 456
Lsp1109I GCAGC 2 cut(s) 214, 217
LweI GCATC 1 cut(s) 894
MaeI CTAG 5 cut(s) 45, 177, 332, 531, 882
MaeII ACGT 2 cut(s) 1005, 1128
MaeIII GTNAC 2 cut(s) 722, 1016
MalI GATC 6 cut(s) 87, 153, 669, 770, 929, 996
MboI GATC 6 cut(s) 85, 151, 667, 768, 927, 994
MboII GAAGA 8 cut(s) 35, 92, 440, 473, 506, 787, 833, 950
MflI RGATCY 2 cut(s) 85, 768
MlsI TGGCCA 2 cut(s) 870, 1191
MluCI AATT 7 cut(s) 108, 280, 287, 500, 572, 822, 877
MluNI TGGCCA 2 cut(s) 870, 1191
MlyI GAGTC 1 cut(s) 1046
MnlI CCTC 6 cut(s) 76, 154, 768, 781, 813, 1126
Mox20I TGGCCA 2 cut(s) 870, 1191
Mph1103I ATGCAT 1 cut(s) 1070
MroXI GAANNNNTTC 2 cut(s) 465, 798
MscI TGGCCA 2 cut(s) 870, 1191
MseI TTAA 3 cut(s) 111, 279, 290
MslI CAYNNNNRTG 1 cut(s) 1069
Msp20I TGGCCA 2 cut(s) 870, 1191
MspR9I CCNGG 2 cut(s) 356, 959
MvaI CCWGG 2 cut(s) 356, 959
MwoI GCNNNNNNNGC 1 cut(s) 857
NcoI CCATGG 1 cut(s) 903
NdeII GATC 6 cut(s) 85, 151, 667, 768, 927, 994
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 8 cut(s) 311, 547, 572, 907, 1068, 1072, 1159, 1219
NlaIV GGNNCC 5 cut(s) 75, 87, 536, 537, 770
NmuCI GTSAC 2 cut(s) 722, 1016
NsiI ATGCAT 1 cut(s) 1070
NspI RCATGY 3 cut(s) 1068, 1072, 1219
PaeI GCATGC 1 cut(s) 1068
PciI ACATGT 1 cut(s) 1215
PciSI GCTCTTC 1 cut(s) 456
PdmI GAANNNNTTC 2 cut(s) 465, 798
PfeI GAWTC 2 cut(s) 557, 750
PflFI GACNNNGTC 1 cut(s) 1007
PfoI TCCNGGA 2 cut(s) 354, 957
PkrI GCNGC 3 cut(s) 229, 232, 684
PleI GAGTC 1 cut(s) 1046
PpsI GAGTC 1 cut(s) 1046
PpuMI RGGWCCY 1 cut(s) 535
PscI ACATGT 1 cut(s) 1215
PsiI TTATAA 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 535
Psp6I CCWGG 2 cut(s) 354, 957
PspFI CCCAGC 1 cut(s) 1074
PspGI CCWGG 2 cut(s) 354, 957
PspN4I GGNNCC 5 cut(s) 75, 87, 536, 537, 770
PspPI GGNCC 2 cut(s) 535, 1159
PspPPI RGGWCCY 1 cut(s) 535
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
PsuI RGATCY 2 cut(s) 85, 768
PsyI GACNNNGTC 1 cut(s) 1007
RseI CAYNNNNRTG 1 cut(s) 1069
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 3 cut(s) 111, 279, 290
SatI GCNGC 3 cut(s) 228, 231, 683
Sau3AI GATC 6 cut(s) 85, 151, 667, 768, 927, 994
Sau96I GGNCC 2 cut(s) 535, 1159
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 2 cut(s) 356, 959
SfaNI GCATC 1 cut(s) 894
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 1069
SphI GCATGC 1 cut(s) 1068
Sse9I AATT 7 cut(s) 108, 280, 287, 500, 572, 822, 877
SsiI CCGC 1 cut(s) 683
SspMI CTAG 5 cut(s) 45, 177, 332, 531, 882
StyD4I CCNGG 2 cut(s) 354, 957
StyI CCWWGG 2 cut(s) 890, 903
TaaI ACNGT 5 cut(s) 200, 219, 703, 728, 785
TaiI ACGT 2 cut(s) 1008, 1131
TaqI TCGA 2 cut(s) 1055, 1131
TasI AATT 7 cut(s) 108, 280, 287, 500, 572, 822, 877
TauI GCSGC 1 cut(s) 685
TfiI GAWTC 2 cut(s) 557, 750
Tru1I TTAA 3 cut(s) 111, 279, 290
Tru9I TTAA 3 cut(s) 111, 279, 290
TscAI CASTG 3 cut(s) 397, 991, 1021
TseFI GTSAC 2 cut(s) 722, 1016
TseI GCWGC 2 cut(s) 227, 230
Tsp45I GTSAC 2 cut(s) 722, 1016
TspDTI ATGAA 4 cut(s) 300, 570, 585, 911
TspGWI ACGGA 1 cut(s) 1220
TspRI CASTG 3 cut(s) 397, 991, 1021
Tth111I GACNNNGTC 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 3 cut(s) 500, 572, 877
XceI RCATGY 3 cut(s) 1068, 1072, 1219
XmnI GAANNNNTTC 2 cut(s) 465, 798
XspI CTAG 5 cut(s) 45, 177, 332, 531, 882
ZraI GACGTC 1 cut(s) 1129
Zsp2I ATGCAT 1 cut(s) 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.