Rmu_sc0002983.1_g000013

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002983.1
OG0000419
Physical Location & Seq
Reverse (-)
45442 .. 46354
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002983.1_g000013.1.cds

Sequence Viewer

Length: 795 bp
atgttcccagctctctttgcattagctgaagaactctacgaaaatggtaggccacagtttgaagaaagtcatatacagcagagtgctgtaagaaaagaaaaaatcaacttccttgaaagtccagaaagtgctagggtccctatcatggcactcaatgaatcagactggcatgaattccataatctgataggaagacataattcagaagacttagttcctccaactctctttattatttcaggaccttatgttgggagatacttagtcaatgttcagagtgaacatcctcaggaacacaagcgctggcttgttgaaaatgatccactcctccagaatggagtcataaggcaaacggagaagttgaatatattactccatatatatcattatgtgagaattattcaaaggaaatatcttcaaccagcctgtgtagggtacaatggccaaccaaactcaagcatcccatggatgaaggccatggcgctagaatatatcaagaagatcatctctgaagatatcagcaataccttcctggcagcaggagagaaaatcattatcactgcatacgatcatcctgacgtagtcagcagtgacctattcctatctctcaatagaaaagagatagattcaactatggcatgcatgcgctgggtggaaaagcttgaaactgacaaccactataaaatgtatgtcgatactgacgttgaagataatgctactactgttagaatggcccaggcagacaacagctcctttgtctttggctatcattcagaaacagacgagaatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

264

Amino Acids

30.58

Weight (kDa)

5.2

Isoelectric Point (pI)

63.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 2 cut(s) 48, 531
AfaI GTAC 1 cut(s) 437
AfeI AGCGCT 1 cut(s) 302
AfiI CCNNNNNNNGG 3 cut(s) 145, 251, 432
AgsI TTSAA 9 cut(s) 62, 116, 314, 364, 404, 419, 630, 665, 707
AjnI CCWGG 2 cut(s) 531, 735
AluBI AGCT 4 cut(s) 11, 26, 661, 750
AluI AGCT 4 cut(s) 11, 26, 661, 750
AlwI GGATC 1 cut(s) 314
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 4 cut(s) 50, 442, 474, 732
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 3 cut(s) 303, 484, 648
AspS9I GGNCC 3 cut(s) 136, 242, 733
AvaII GGWCC 2 cut(s) 136, 242
AxyI CCTNAGG 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BalI TGGCCA 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 199, 213
BbvI GCAGC 1 cut(s) 548
BciT130I CCWGG 2 cut(s) 533, 737
BfaI CTAG 2 cut(s) 132, 485
BfoI RGCGCY 2 cut(s) 304, 485
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 2 cut(s) 533, 737
Bme18I GGWCC 2 cut(s) 136, 242
BmgT120I GGNCC 3 cut(s) 136, 242, 733
BmiI GGNNCC 2 cut(s) 137, 138
BmrFI CCNGG 2 cut(s) 533, 737
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 2 cut(s) 199, 213
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 464, 477, 735
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 251, 432
Bse1I ACTGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 533, 737
BseDI CCNNGG 3 cut(s) 464, 477, 735
BseGI GGATG 4 cut(s) 283, 459, 474, 571
BseLI CCNNNNNNNGG 3 cut(s) 145, 251, 432
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 548
BseYI CCCAGC 2 cut(s) 7, 648
BshFI GGCC 4 cut(s) 52, 444, 476, 734
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 145, 251, 432
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 4 cut(s) 52, 444, 476, 734
Bsp143I GATC 3 cut(s) 319, 501, 568
Bsp19I CCATGG 2 cut(s) 464, 477
BspANI GGCC 4 cut(s) 52, 444, 476, 734
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 137, 138
BspPI GGATC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 464, 477, 735
BssMI GATC 3 cut(s) 319, 501, 568
BssT1I CCWWGG 2 cut(s) 464, 477
Bst2UI CCWGG 2 cut(s) 533, 737
Bst4CI ACNGT 2 cut(s) 57, 724
BstC8I GCNNGC 3 cut(s) 305, 640, 644
BstDEI CTNAG 3 cut(s) 211, 262, 288
BstDSI CCRYGG 2 cut(s) 464, 477
BstF5I GGATG 4 cut(s) 283, 459, 474, 571
BstH2I RGCGCY 2 cut(s) 304, 485
BstHHI GCGC 3 cut(s) 303, 484, 648
BstKTI GATC 3 cut(s) 322, 504, 571
BstMBI GATC 3 cut(s) 319, 501, 568
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 533, 737
BstNSI RCATGY 2 cut(s) 642, 646
BstSCI CCNGG 2 cut(s) 531, 735
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 2 cut(s) 199, 213
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 4 cut(s) 52, 444, 476, 734
BtgI CCRYGG 2 cut(s) 464, 477
BtsCI GGATG 4 cut(s) 283, 459, 474, 571
BtsI GCAGTG 2 cut(s) 558, 595
BtsIMutI CAGTG 2 cut(s) 558, 595
Cac8I GCNNGC 3 cut(s) 305, 640, 644
CfoI GCGC 3 cut(s) 303, 484, 648
Cfr13I GGNCC 3 cut(s) 136, 242, 733
Csp6I GTAC 1 cut(s) 436
CviAII CATG 6 cut(s) 145, 170, 465, 478, 639, 643
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 3 cut(s) 211, 262, 288
DpnI GATC 3 cut(s) 321, 503, 570
DpnII GATC 3 cut(s) 319, 501, 568
EaeI YGGCCR 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 464, 477
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 2 cut(s) 136, 242
Eco47III AGCGCT 1 cut(s) 302
Eco57I CTGAAG 2 cut(s) 48, 531
Eco81I CCTNAGG 1 cut(s) 288
EcoO109I RGGNCCY 2 cut(s) 136, 242
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 531, 735
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 464, 477
EcoT22I ATGCAT 1 cut(s) 644
ErhI CCWWGG 2 cut(s) 464, 477
FaeI CATG 6 cut(s) 148, 173, 468, 481, 642, 646
FaqI GGGAC 1 cut(s) 122
FatI CATG 6 cut(s) 144, 169, 464, 477, 638, 642
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 4 cut(s) 270, 446, 481, 558
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 2 cut(s) 132, 485
GlaI GCGC 3 cut(s) 302, 483, 647
GluI GCNGC 1 cut(s) 537
GsaI CCCAGC 2 cut(s) 11, 652
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 2 cut(s) 304, 485
HaeIII GGCC 4 cut(s) 52, 444, 476, 734
HhaI GCGC 3 cut(s) 303, 484, 648
Hin1II CATG 6 cut(s) 148, 173, 468, 481, 642, 646
Hin6I GCGC 3 cut(s) 301, 482, 646
HinP1I GCGC 3 cut(s) 301, 482, 646
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 3 cut(s) 158, 339, 626
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 6 cut(s) 163, 186, 205, 276, 511, 775
Hpy188III TCNNGA 6 cut(s) 122, 240, 290, 331, 496, 575
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 466, 538
HpyCH4III ACNGT 2 cut(s) 57, 724
HpyCH4IV ACGT 2 cut(s) 579, 702
HpyCH4V TGCA 3 cut(s) 20, 563, 642
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 211, 262, 288
HpySE526I ACGT 2 cut(s) 579, 702
Hsp92II CATG 6 cut(s) 148, 173, 468, 481, 642, 646
HspAI GCGC 3 cut(s) 301, 482, 646
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 3 cut(s) 319, 501, 568
LmnI GCTCC 1 cut(s) 755
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 1 cut(s) 468
MaeI CTAG 2 cut(s) 132, 485
MaeII ACGT 2 cut(s) 579, 702
MaeIII GTNAC 1 cut(s) 590
MalI GATC 3 cut(s) 321, 503, 570
MboI GATC 3 cut(s) 319, 501, 568
MboII GAAGA 8 cut(s) 41, 74, 204, 218, 407, 511, 524, 719
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 3 cut(s) 173, 199, 396
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 228, 297, 338
Mox20I TGGCCA 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 644
MscI TGGCCA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 533, 737
MvaI CCWGG 2 cut(s) 533, 737
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 2 cut(s) 464, 477
NdeII GATC 3 cut(s) 319, 501, 568
NlaIII CATG 6 cut(s) 148, 173, 468, 481, 642, 646
NlaIV GGNNCC 2 cut(s) 137, 138
NmuCI GTSAC 1 cut(s) 590
NsiI ATGCAT 1 cut(s) 644
NspI RCATGY 2 cut(s) 642, 646
PaeI GCATGC 2 cut(s) 642, 646
PcsI WCGNNNNNNNCGW 1 cut(s) 699
PfeI GAWTC 2 cut(s) 158, 626
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PpuMI RGGWCCY 2 cut(s) 136, 242
Psp5II RGGWCCY 2 cut(s) 136, 242
Psp6I CCWGG 2 cut(s) 531, 735
PspFI CCCAGC 2 cut(s) 7, 648
PspGI CCWGG 2 cut(s) 531, 735
PspN4I GGNNCC 2 cut(s) 137, 138
PspPI GGNCC 3 cut(s) 136, 242, 733
PspPPI RGGWCCY 2 cut(s) 136, 242
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 3 cut(s) 319, 501, 568
Sau96I GGNCC 3 cut(s) 136, 242, 733
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 533, 737
SetI ASST 9 cut(s) 13, 28, 247, 530, 582, 597, 663, 705, 752
SfaNI GCATC 1 cut(s) 468
SinI GGWCC 2 cut(s) 136, 242
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
SphI GCATGC 2 cut(s) 642, 646
Sse9I AATT 3 cut(s) 173, 199, 396
SspMI CTAG 2 cut(s) 132, 485
StyD4I CCNGG 2 cut(s) 531, 735
StyI CCWWGG 2 cut(s) 464, 477
TaaI ACNGT 2 cut(s) 57, 724
TaiI ACGT 2 cut(s) 582, 705
TaqI TCGA 1 cut(s) 693
TasI AATT 3 cut(s) 173, 199, 396
TfiI GAWTC 2 cut(s) 158, 626
TscAI CASTG 2 cut(s) 565, 595
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 3 cut(s) 171, 186, 485
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 2 cut(s) 565, 595
Tth111I GACNNNGTC 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 136, 242
XapI RAATTY 1 cut(s) 173
XceI RCATGY 2 cut(s) 642, 646
XspI CTAG 2 cut(s) 132, 485
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.