RchiOBHm_Chr7g0243311

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000419
Physical Location & Seq
Forward (+)
69559230 .. 69561922
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21805

Sequence Viewer

Length: 2163 bp
ATGGACAACATCTTCAAGCATGTGGCAGAGTTTTGCGTCGTCTACATAGATGACATCCTAGTCTTCTCCAAAAACAAAGAAGAACACATGAAACACCTCCATGAGGTAGTAAAGCTGATAGTTCAGCATGGAATCATCCTAGGTGAAAAGAAAATCTTCTTTATCCTTGATGAAGTTGATTTCCTAGGAATAAACATCAAAAATGGAGTAATAAAACTCCAACCTCATATTCTTGAAAAGATCTGGAAGTTCCCAGACAAAATTCCTGATGCTAAGAGTCTAGAGAGATTCCTTGGTGTCATAAATTATGGGAGAGATTTCATCCCTAAAATCTCAGGGTTAACAGCAATGTTATCTCCTAAGACAAGTTCCAAAAGAAAATGGAACTTCACAGAAGATGATGAAAAAATCGTGAAGCAGATAAAAAATCTCTGCAAAAACCTCCATCCTCTGCAACAACCAGAAGAGAATGATGAAATTATCCTCCAGACAGATGCGAGCGATAATTATTGGTCCGGTGTGGTTCTGGCAAAGGCGCCTGGAACTAACATTGAAAAGATCTGTAAATTTTGTAGCGGCAAGTTCAGCCCTGCAAAACTAAATTATCCCACAGGGGAAAAAGAAATTTTGGCTGTTAAGAAAACGATTTTAAATTCTCTAGCTTTTCTTGGAAAACCCTTTACTGTCCGCACCGATTGTGCCAGAGTAAAGAATTTCAAAATTTTCAAACTTGATAAAGCTGCTGATAGAGGAAGATTAGCAAACTGGCAATTATTTCTTAACCAATATGATTATAATGTTGAATTAATTGCAGGAAACAAGAATTATCTTCCAGACGCATTGACCAGGGAAATGGCAATGTTCAGCCAGAGAGAAGACGACGAAGGTCGTAATCCCAGAAGCAGAAGGACTGGGAAAGAACATGAGCTTCAAGAAGATCCTATGGAAACCAAAGAAAAGGTTCTTAAAAGGTTTCTGCTAAGTCCTAAAGGACTAGCCTCAACTGATCAATCCCAGGGTAAAGGATTGGCTAGCCCGTCTCAAACGGCAGACGGTAAAGGCTCATCAAGACCGTTGACGGCTGCTGCTTTGCCAAAAAACAGACCAACTCCAACTGGAGTCATAAATGTTTTTAATTATGAATTAAGAACTTTTGACACTCCTGTGTTCAGAACTGGCAGGAGACTAGCTTATCACCAGAAGGCAATCCTGGATAATCTCTTATTTGCTTTTCAAGAAAGAAGCAGTGGTCTAATGTTCCCAGCACTCTTTGCATTAGCTGAAGAACTATATGAGAACGCCAGACCACAATTTGAAGAAAGTCATATACAGCAGAGTGCTGTAAGAAAAGAAAAAATTCTCTTCCTTGAAAGTCCAGAAAGTGCTAGAGTTCCTGTCATGGCACTTAATGAATCAGACTGGCATGAATTCCATAGTCTGATAGGAAGACATAATCCAGAAGACCTAGTTCCTCCAACTCTCTTTATTGTTTCAGGTCCTTATGTTGGAAGATACCTGGTTAATGTTCAGAGTGAACATCCTCAAGAACATAAGCTCTGGCTTGTTGAAAATGGTTTTGTCCATAATCTGTGGACTAAAACAAATGATGATCTAAAAGGTTTGCCGCCTATCATTGTCAATACAGTTAAAAATGTAAGAAAAAATGACTGTATGCTTCGACTGAAGTTCAGATCCACTCCTCCAGAATGGATCCAGAAGGCAAACGGTGAAGTTGAATATATTCCTCCTTATCATTATGTAAGAATTATTCAAAGGAAATATCTTCAACCAGCCTGTGTAGGGTACAATGGCCAACCAAACTCAAGCATCCCGTGGATGAAGGCCATGACTCTAGAATATATCAAAAAGATCATCTCTGAGGATACCTACAATACCTTCCTGGCAGCAGGAGAAAAAATTATCATCACTGCTTACGATCATCCTGACGTAGTCAGCAGTGACTTATTCCTATCTCTTACCAGAAAAGAGATAGATTCGACACTGGCATGCTTACGATGGGTGGAAAAACTTGAAACTGACAACCACTACAAGATGTATGTTGATACAGATGTCGAAGACAATGCAACAACAGTAAGGATGGCCCAGGCAGATAACGACTCGTTTGTCCTTGGTCACAATTCAGAAACCGATGAGAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

720

Amino Acids

82.47

Weight (kDa)

7.31

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 66 2.9e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 130 - 227 1.1e-15 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 157 - 263 1.3e-17 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AasI GACNNNNNNGTC 2 cut(s) 59, 2123
AccB1I GGYRCC 1 cut(s) 535
AccI GTMKAC 1 cut(s) 42
AciI CCGC 3 cut(s) 576, 688, 1625
AclWI GGATC 4 cut(s) 932, 1686, 1705, 1718
AcoI YGGCCR 1 cut(s) 1810
AcsI RAATTY 8 cut(s) 261, 566, 624, 652, 712, 720, 1356, 1427
AcuI CTGAAG 2 cut(s) 1302, 1703
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 1 cut(s) 1805
AfiI CCNNNNNNNGG 3 cut(s) 103, 1505, 1800
AflIII ACRYGT 1 cut(s) 2157
AjnI CCWGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AleI CACNNNNGTG 1 cut(s) 1163
AluBI AGCT 7 cut(s) 115, 662, 740, 928, 1190, 1280, 1555
AluI AGCT 7 cut(s) 115, 662, 740, 928, 1190, 1280, 1555
Alw26I GTCTC 2 cut(s) 1044, 1177
AlwI GGATC 4 cut(s) 932, 1686, 1705, 1718
AoxI GGCC 3 cut(s) 1810, 1842, 2100
ApeKI GCWGC 4 cut(s) 740, 1082, 1085, 1904
ApoI RAATTY 8 cut(s) 261, 566, 624, 652, 712, 720, 1356, 1427
AseI ATTAAT 1 cut(s) 806
Asp700I GAANNNNTTC 4 cut(s) 155, 960, 1356, 1740
AspA2I CCTAGG 2 cut(s) 139, 184
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 513, 1496, 2101
AsuHPI GGTGA 3 cut(s) 155, 1187, 1739
AsuNHI GCTAGC 1 cut(s) 1031
AvaII GGWCC 2 cut(s) 513, 1496
AvrII CCTAGG 2 cut(s) 139, 184
BaeI ACNNNNGTAYC 2 cut(s) 2055, 2088
BalI TGGCCA 1 cut(s) 1812
BamHI GGATCC 1 cut(s) 1710
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 5 cut(s) 55, 882, 1453, 1467, 2082
BbvI GCAGC 4 cut(s) 727, 1069, 1072, 1916
BccI CCATC 3 cut(s) 453, 2010, 2092
BceAI ACGGC 2 cut(s) 1062, 1095
BcgI CGANNNNNNTGC 2 cut(s) 2063, 2097
BciT130I CCWGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
BciVI GTATCC 1 cut(s) 1876
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 1044, 1177
BfoI RGCGCY 1 cut(s) 539
BfuI GTATCC 1 cut(s) 1876
BglII AGATCT 2 cut(s) 240, 558
BisI GCNGC 6 cut(s) 577, 741, 1083, 1086, 1625, 1905
BlnI CCTAGG 2 cut(s) 139, 184
BlsI GCNGC 6 cut(s) 578, 742, 1084, 1087, 1626, 1906
Bme1390I CCNGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
Bme18I GGWCC 2 cut(s) 513, 1496
BmgT120I GGNCC 3 cut(s) 513, 1496, 2101
BmiI GGNNCC 2 cut(s) 537, 1712
BmrFI CCNGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 3 cut(s) 259, 484, 1836
BmtI GCTAGC 1 cut(s) 1035
BmuI ACTGGG 1 cut(s) 921
BoxI GACNNNNGTC 1 cut(s) 885
BpiI GAAGAC 5 cut(s) 55, 882, 1453, 1467, 2082
BpmI CTGGAG 3 cut(s) 470, 1137, 1686
BpuEI CTTGAG 2 cut(s) 1527, 1807
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 9 cut(s) 139, 184, 292, 846, 1014, 1015, 1832, 2103, 2128
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 1505, 1800
Bse1I ACTGG 6 cut(s) 770, 916, 1120, 1180, 1424, 2007
Bse3DI GCAATG 2 cut(s) 354, 864
BseBI CCWGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
BseDI CCNNGG 9 cut(s) 139, 184, 292, 846, 1014, 1015, 1832, 2103, 2128
BseGI GGATG 9 cut(s) 54, 135, 321, 445, 1537, 1827, 1842, 1939, 2103
BseLI CCNNNNNNNGG 3 cut(s) 103, 1505, 1800
BseMI GCAATG 2 cut(s) 354, 864
BseMII CTCAG 2 cut(s) 348, 1869
BseNI ACTGG 6 cut(s) 770, 916, 1120, 1180, 1424, 2007
BseRI GAGGAG 1 cut(s) 1689
BseXI GCAGC 4 cut(s) 727, 1069, 1072, 1916
BseYI CCCAGC 1 cut(s) 1261
BshFI GGCC 3 cut(s) 1812, 1844, 2102
BshNI GGYRCC 1 cut(s) 535
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 3 cut(s) 103, 1505, 1800
BsmAI GTCTC 2 cut(s) 1044, 1177
BsmBI CGTCTC 1 cut(s) 1044
BsnI GGCC 3 cut(s) 1812, 1844, 2102
Bsp143I GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
BspACI CCGC 3 cut(s) 576, 688, 1625
BspANI GGCC 3 cut(s) 1812, 1844, 2102
BspCNI CTCAG 2 cut(s) 347, 1870
BspLI GGNNCC 2 cut(s) 537, 1712
BspOI GCTAGC 1 cut(s) 1035
BspPI GGATC 4 cut(s) 932, 1686, 1705, 1718
BspT107I GGYRCC 1 cut(s) 535
BsrDI GCAATG 2 cut(s) 354, 864
BsrI ACTGG 6 cut(s) 770, 916, 1120, 1180, 1424, 2007
BssECI CCNNGG 9 cut(s) 139, 184, 292, 846, 1014, 1015, 1832, 2103, 2128
BssMI GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 4 cut(s) 139, 184, 292, 2128
Bst2UI CCWGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
Bst4CI ACNGT 7 cut(s) 685, 1055, 1074, 1645, 1670, 1727, 2092
Bst6I CTCTTC 2 cut(s) 459, 1367
BstACI GRCGYC 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 1271
BstC8I GCNNGC 3 cut(s) 499, 1033, 2008
BstDEI CTNAG 5 cut(s) 273, 334, 360, 980, 1878
BstDSI CCRYGG 1 cut(s) 1832
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 9 cut(s) 54, 135, 321, 445, 1537, 1827, 1842, 1939, 2103
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 9 cut(s) 243, 561, 940, 1009, 1612, 1694, 1713, 1872, 1939
BstMAI GTCTC 2 cut(s) 1044, 1177
BstMBI GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
BstMWI GCNNNNNNNGC 2 cut(s) 585, 1271
BstNI CCWGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
BstNSI RCATGY 3 cut(s) 23, 2010, 2161
BstPAI GACNNNNGTC 1 cut(s) 885
BstSCI CCNGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
BstV1I GCAGC 4 cut(s) 727, 1069, 1072, 1916
BstV2I GAAGAC 5 cut(s) 55, 882, 1453, 1467, 2082
BstX2I RGATCY 5 cut(s) 240, 558, 937, 1691, 1710
BstXI CCANNNNNNTGG 1 cut(s) 853
BstYI RGATCY 5 cut(s) 240, 558, 937, 1691, 1710
BsuI GTATCC 1 cut(s) 1876
BsuRI GGCC 3 cut(s) 1812, 1844, 2102
BtgI CCRYGG 1 cut(s) 1832
BtsCI GGATG 9 cut(s) 54, 135, 321, 445, 1537, 1827, 1842, 1939, 2103
BtsI GCAGTG 3 cut(s) 1252, 1926, 1963
BtsIMutI CAGTG 4 cut(s) 1252, 1926, 1963, 2000
Cac8I GCNNGC 3 cut(s) 499, 1033, 2008
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 513, 1496, 2101
CseI GACGC 2 cut(s) 25, 845
CsiI ACCWGGT 1 cut(s) 1515
Csp6I GTAC 1 cut(s) 1804
CviQI GTAC 1 cut(s) 1804
DdeI CTNAG 5 cut(s) 273, 334, 360, 980, 1878
DinI GGCGCC 1 cut(s) 537
DpnI GATC 9 cut(s) 242, 560, 939, 1008, 1611, 1693, 1712, 1871, 1938
DpnII GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
DraI TTTAAA 1 cut(s) 651
DrdI GACNNNNNNGTC 2 cut(s) 59, 2123
DseDI GACNNNNNNGTC 2 cut(s) 59, 2123
EaeI YGGCCR 1 cut(s) 1810
Eam1104I CTCTTC 2 cut(s) 459, 1367
EarI CTCTTC 2 cut(s) 459, 1367
Eco130I CCWWGG 4 cut(s) 139, 184, 292, 2128
Eco47I GGWCC 2 cut(s) 513, 1496
Eco57I CTGAAG 2 cut(s) 1302, 1703
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 1496
EcoRI GAATTC 1 cut(s) 1427
EcoRII CCWGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
EcoT14I CCWWGG 4 cut(s) 139, 184, 292, 2128
EgeI GGCGCC 1 cut(s) 537
EheI GGCGCC 1 cut(s) 537
ErhI CCWWGG 4 cut(s) 139, 184, 292, 2128
Esp3I CGTCTC 1 cut(s) 1044
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 6 cut(s) 577, 741, 1083, 1086, 1625, 1905
FokI GGATG 9 cut(s) 41, 122, 308, 432, 1524, 1814, 1849, 1926, 2110
Fsp4HI GCNGC 6 cut(s) 577, 741, 1083, 1086, 1625, 1905
GlaI GCGC 1 cut(s) 537
GluI GCNGC 6 cut(s) 577, 741, 1083, 1086, 1625, 1905
GsaI CCCAGC 1 cut(s) 1265
GsuI CTGGAG 3 cut(s) 470, 1137, 1686
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 3 cut(s) 1812, 1844, 2102
HapII CCGG 1 cut(s) 516
HgaI GACGC 2 cut(s) 25, 845
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 536
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 2 cut(s) 342, 1077
HindII GTYRAC 2 cut(s) 342, 1077
HinfI GANTC 8 cut(s) 132, 277, 288, 1119, 1412, 1849, 1994, 2117
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 1 cut(s) 516
HphI GGTGA 3 cut(s) 155, 1187, 1739
Hpy166II GTNNAC 5 cut(s) 43, 342, 1077, 1535, 1593
Hpy188I TCNGA 7 cut(s) 1172, 1417, 1440, 1530, 1691, 1879, 2143
Hpy8I GTNNAC 5 cut(s) 43, 342, 1077, 1535, 1593
Hpy99I CGWCG 2 cut(s) 41, 884
HpyAV CCTTC 6 cut(s) 878, 900, 1195, 1711, 1834, 1906
HpyCH4III ACNGT 7 cut(s) 685, 1055, 1074, 1645, 1670, 1727, 2092
HpyCH4IV ACGT 1 cut(s) 1947
HpyCH4V TGCA 6 cut(s) 435, 454, 593, 812, 1274, 2084
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 1271
HpyF3I CTNAG 5 cut(s) 273, 334, 360, 980, 1878
HpySE526I ACGT 1 cut(s) 1947
Hsp92I GRCGYC 1 cut(s) 536
HspAI GCGC 1 cut(s) 536
KasI GGCGCC 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 1006
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
Lsp1109I GCAGC 4 cut(s) 727, 1069, 1072, 1916
LweI GCATC 3 cut(s) 259, 484, 1836
MabI ACCWGGT 1 cut(s) 1515
MaeII ACGT 1 cut(s) 1947
MaeIII GTNAC 2 cut(s) 1958, 2132
MalI GATC 9 cut(s) 242, 560, 939, 1008, 1611, 1693, 1712, 1871, 1938
MboI GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
MflI RGATCY 5 cut(s) 240, 558, 937, 1691, 1710
MlsI TGGCCA 1 cut(s) 1812
MluNI TGGCCA 1 cut(s) 1812
Mly113I GGCGCC 1 cut(s) 536
MlyI GAGTC 4 cut(s) 286, 1128, 1843, 2111
MmeI TCCRAC 4 cut(s) 244, 1136, 1486, 1499
Mox20I TGGCCA 1 cut(s) 1812
MroXI GAANNNNTTC 4 cut(s) 155, 960, 1356, 1740
MscI TGGCCA 1 cut(s) 1812
MslI CAYNNNNRTG 3 cut(s) 99, 1163, 2005
Msp20I TGGCCA 1 cut(s) 1812
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
MvaI CCWGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
MwoI GCNNNNNNNGC 2 cut(s) 585, 1271
NarI GGCGCC 1 cut(s) 536
NdeII GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
NheI GCTAGC 1 cut(s) 1031
NlaIV GGNNCC 2 cut(s) 537, 1712
NmuCI GTSAC 2 cut(s) 1958, 2132
NspI RCATGY 3 cut(s) 23, 2010, 2161
OliI CACNNNNGTG 1 cut(s) 1163
PaeI GCATGC 1 cut(s) 2010
PasI CCCWGGG 1 cut(s) 1015
PciI ACATGT 1 cut(s) 2157
PdmI GAANNNNTTC 4 cut(s) 155, 960, 1356, 1740
PfeI GAWTC 4 cut(s) 132, 288, 1412, 1994
PflFI GACNNNGTC 1 cut(s) 1949
PfoI TCCNGGA 1 cut(s) 1209
PkrI GCNGC 6 cut(s) 578, 742, 1084, 1087, 1626, 1906
PleI GAGTC 4 cut(s) 285, 1127, 1843, 2111
PluTI GGCGCC 1 cut(s) 539
PpsI GAGTC 4 cut(s) 285, 1127, 1843, 2111
PpuMI RGGWCCY 1 cut(s) 1496
PscI ACATGT 1 cut(s) 2157
PshAI GACNNNNGTC 1 cut(s) 885
PshBI ATTAAT 1 cut(s) 806
PsiI TTATAA 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 1496
Psp6I CCWGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
PspFI CCCAGC 1 cut(s) 1261
PspGI CCWGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
PspN4I GGNNCC 2 cut(s) 537, 1712
PspPI GGNCC 3 cut(s) 513, 1496, 2101
PspPPI RGGWCCY 1 cut(s) 1496
PsuI RGATCY 5 cut(s) 240, 558, 937, 1691, 1710
PsyI GACNNNGTC 1 cut(s) 1949
RsaI GTAC 1 cut(s) 1805
RsaNI GTAC 1 cut(s) 1804
RseI CAYNNNNRTG 3 cut(s) 99, 1163, 2005
SatI GCNGC 6 cut(s) 577, 741, 1083, 1086, 1625, 1905
Sau3AI GATC 9 cut(s) 240, 558, 937, 1006, 1609, 1691, 1710, 1869, 1936
Sau96I GGNCC 3 cut(s) 513, 1496, 2101
SchI GAGTC 4 cut(s) 286, 1128, 1843, 2111
ScrFI CCNGG 7 cut(s) 540, 847, 1016, 1211, 1517, 1901, 2105
SexAI ACCWGGT 1 cut(s) 1515
SfaNI GCATC 3 cut(s) 259, 484, 1836
SfoI GGCGCC 1 cut(s) 537
SinI GGWCC 2 cut(s) 513, 1496
SmiMI CAYNNNNRTG 3 cut(s) 99, 1163, 2005
SmlI CTYRAG 2 cut(s) 1542, 1822
SmoI CTYRAG 2 cut(s) 1542, 1822
SphI GCATGC 1 cut(s) 2010
SsiI CCGC 3 cut(s) 576, 688, 1625
SspDI GGCGCC 1 cut(s) 535
StyD4I CCNGG 7 cut(s) 538, 845, 1014, 1209, 1515, 1899, 2103
StyI CCWWGG 4 cut(s) 139, 184, 292, 2128
TaaI ACNGT 7 cut(s) 685, 1055, 1074, 1645, 1670, 1727, 2092
TaiI ACGT 1 cut(s) 1950
TaqI TCGA 3 cut(s) 1678, 1997, 2073
TauI GCSGC 2 cut(s) 579, 1627
TfiI GAWTC 4 cut(s) 132, 288, 1412, 1994
TscAI CASTG 4 cut(s) 1252, 1933, 1963, 2007
TseFI GTSAC 2 cut(s) 1958, 2132
TseI GCWGC 4 cut(s) 740, 1082, 1085, 1904
Tsp45I GTSAC 2 cut(s) 1958, 2132
TspDTI ATGAA 9 cut(s) 104, 186, 310, 417, 489, 1155, 1425, 1440, 1853
TspRI CASTG 4 cut(s) 1252, 1933, 1963, 2007
Tth111I GACNNNGTC 1 cut(s) 1949
VpaK11BI GGWCC 2 cut(s) 513, 1496
VspI ATTAAT 1 cut(s) 806
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 8 cut(s) 261, 566, 624, 652, 712, 720, 1356, 1427
XbaI TCTAGA 2 cut(s) 280, 1852
XceI RCATGY 3 cut(s) 23, 2010, 2161
XmaJI CCTAGG 2 cut(s) 139, 184
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 4 cut(s) 155, 960, 1356, 1740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.