Rmu_sc0005879.1_g000012

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005879.1
OG0000419
Physical Location & Seq
Reverse (-)
52507 .. 53592
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005879.1_g000012.1.cds

Sequence Viewer

Length: 1086 bp
atggctgctgctttgccaaaaagcagaccaactccaactggagttataaatgtttttaattatgaattgagaacttttgatactcctgtgttcagaactggcaggagactagcttatcaccagaaggcaatcctggataatcttctgtttgcctttcaagaaagaagcagtggtctaatgttcccagctctctttgcattagctgaagaactctacaaaaacagaagaccacagtttgaagaaagtcatacacagcaaagtgctgtaagaaaagaaaaaattcacttcctggaaagtcctgaaagtgctaggatcccgatcatggcactcaatgagtcagatcggtatgaatttcacaatctgataggaaggcataatcctgaaaatctagttcccccaactctctttatcattgcaggaccttatgttgggagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataacttgtggactaaaacaaatgatgatcttagaggtttgccgcccatcattgtcaacacagtcaaaaatattagaaaaaatgactgtatgcttcgtctgaagttcagatccacgcctccagaatggatcctgaaggcaaacggtgaagttgaatatattcctccatatcattatgtgagaattattcaaaggaaatatcttcaaccagcctgtatagggtacaatggccagccaaactcaagcattccatggatgaaggccatgactctagagtatatcaagaagatcatccctgaagatgtccacaatactttcctggcagcaggagaaaaaattattatcactgcttacgatcatcctgacgtagtcagcagtgacctattcctatctcttaccagaaaggagatagactcgagactggcatgcttgcattgggtggaaaagcttgaaacagacaaccactacaagatgtatgttgatacagatgtcgaagacaatgtaacaactgctcgaatggcccaggtagataacgactcatttgtccttggtcacaattcagaaactgacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

361

Amino Acids

41.81

Weight (kDa)

6.4

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AasI GACNNNNNNGTC 1 cut(s) 1046
AciI CCGC 1 cut(s) 548
AclWI GGATC 5 cut(s) 307, 320, 609, 628, 641
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 2 cut(s) 279, 350
AcuI CTGAAG 4 cut(s) 225, 626, 659, 822
AfaI GTAC 1 cut(s) 728
AfiI CCNNNNNNNGG 3 cut(s) 322, 428, 723
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 7 cut(s) 158, 239, 491, 659, 695, 710, 956
AjnI CCWGG 4 cut(s) 132, 288, 822, 1026
AluBI AGCT 5 cut(s) 113, 188, 203, 478, 952
AluI AGCT 5 cut(s) 113, 188, 203, 478, 952
Alw26I GTCTC 2 cut(s) 100, 916
AlwI GGATC 5 cut(s) 307, 320, 609, 628, 641
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 919
AoxI GGCC 3 cut(s) 733, 765, 1023
ApeKI GCWGC 3 cut(s) 5, 8, 827
ApoI RAATTY 2 cut(s) 279, 350
Asp700I GAANNNNTTC 2 cut(s) 279, 663
AspS9I GGNCC 2 cut(s) 419, 1024
AsuHPI GGTGA 2 cut(s) 110, 662
AvaI CYCGRG 1 cut(s) 919
AvaII GGWCC 1 cut(s) 419
BaeI ACNNNNGTAYC 4 cut(s) 72, 105, 978, 1011
BalI TGGCCA 1 cut(s) 735
BamHI GGATCC 2 cut(s) 312, 633
BbsI GAAGAC 2 cut(s) 232, 1005
BbvI GCAGC 1 cut(s) 839
BccI CCATC 1 cut(s) 560
BciT130I CCWGG 4 cut(s) 134, 290, 824, 1028
BcoDI GTCTC 2 cut(s) 100, 916
BfaI CTAG 4 cut(s) 110, 309, 389, 776
BisI GCNGC 4 cut(s) 6, 9, 548, 828
BlsI GCNGC 4 cut(s) 7, 10, 549, 829
Bme1390I CCNGG 4 cut(s) 134, 290, 824, 1028
Bme18I GGWCC 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 919
BmgT120I GGNCC 2 cut(s) 419, 1024
BmiI GGNNCC 2 cut(s) 314, 635
BmrFI CCNGG 4 cut(s) 134, 290, 824, 1028
BpiI GAAGAC 2 cut(s) 232, 1005
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 2 cut(s) 60, 609
BpuEI CTTGAG 2 cut(s) 450, 730
BsaBI GATNNNNATC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 755, 1026, 1051
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 428, 723
Bse1I ACTGG 3 cut(s) 43, 103, 930
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 4 cut(s) 134, 290, 824, 1028
BseDI CCNNGG 3 cut(s) 755, 1026, 1051
BseGI GGATG 4 cut(s) 460, 765, 795, 862
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 3 cut(s) 322, 428, 723
BseMI GCAATG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 43, 103, 930
BseXI GCAGC 1 cut(s) 839
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 735, 767, 1025
BsiHKCI CYCGRG 1 cut(s) 919
BslI CCNNNNNNNGG 3 cut(s) 322, 428, 723
BsmAI GTCTC 2 cut(s) 100, 916
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 3 cut(s) 735, 767, 1025
BsoBI CYCGRG 1 cut(s) 919
Bsp143I GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 1 cut(s) 548
BspANI GGCC 3 cut(s) 735, 767, 1025
BspLI GGNNCC 2 cut(s) 314, 635
BspPI GGATC 5 cut(s) 307, 320, 609, 628, 641
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 3 cut(s) 43, 103, 930
BssECI CCNNGG 3 cut(s) 755, 1026, 1051
BssMI GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
BssT1I CCWWGG 2 cut(s) 755, 1051
Bst2UI CCWGG 4 cut(s) 134, 290, 824, 1028
Bst4CI ACNGT 4 cut(s) 234, 568, 593, 650
BstC8I GCNNGC 3 cut(s) 737, 931, 935
BstDEI CTNAG 2 cut(s) 439, 536
BstDSI CCRYGG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 460, 765, 795, 862
BstKTI GATC 8 cut(s) 315, 321, 343, 535, 617, 636, 795, 862
BstMAI GTCTC 2 cut(s) 100, 916
BstMBI GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
BstMWI GCNNNNNNNGC 2 cut(s) 194, 1022
BstNI CCWGG 4 cut(s) 134, 290, 824, 1028
BstNSI RCATGY 2 cut(s) 933, 1084
BstSCI CCNGG 4 cut(s) 132, 288, 822, 1026
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 2 cut(s) 232, 1005
BstX2I RGATCY 3 cut(s) 312, 614, 633
BstYI RGATCY 3 cut(s) 312, 614, 633
BsuRI GGCC 3 cut(s) 735, 767, 1025
BtgI CCRYGG 1 cut(s) 755
BtsCI GGATG 4 cut(s) 460, 765, 795, 862
BtsI GCAGTG 3 cut(s) 175, 849, 886
BtsIMutI CAGTG 3 cut(s) 175, 849, 886
Cac8I GCNNGC 3 cut(s) 737, 931, 935
CaiI CAGNNNCTG 1 cut(s) 1070
Cfr13I GGNCC 2 cut(s) 419, 1024
Csp6I GTAC 1 cut(s) 727
CviAII CATG 5 cut(s) 322, 756, 769, 930, 1081
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 2 cut(s) 439, 536
DpnI GATC 8 cut(s) 314, 320, 342, 534, 616, 635, 794, 861
DpnII GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
EaeI YGGCCR 1 cut(s) 733
Eco130I CCWWGG 2 cut(s) 755, 1051
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 4 cut(s) 225, 626, 659, 822
Eco88I CYCGRG 1 cut(s) 919
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 4 cut(s) 132, 288, 822, 1026
EcoT14I CCWWGG 2 cut(s) 755, 1051
ErhI CCWWGG 2 cut(s) 755, 1051
FaeI CATG 5 cut(s) 325, 759, 772, 933, 1084
FatI CATG 5 cut(s) 321, 755, 768, 929, 1080
Fnu4HI GCNGC 4 cut(s) 6, 9, 548, 828
FokI GGATG 4 cut(s) 447, 772, 782, 849
Fsp4HI GCNGC 4 cut(s) 6, 9, 548, 828
FspBI CTAG 4 cut(s) 110, 309, 389, 776
GluI GCNGC 4 cut(s) 6, 9, 548, 828
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 60, 609
HaeIII GGCC 3 cut(s) 735, 767, 1025
Hin1II CATG 5 cut(s) 325, 759, 772, 933, 1084
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 950
HinfI GANTC 4 cut(s) 335, 772, 917, 1040
HphI GGTGA 2 cut(s) 110, 662
Hpy166II GTNNAC 4 cut(s) 458, 516, 562, 811
Hpy188I TCNGA 7 cut(s) 95, 340, 363, 453, 606, 614, 1066
Hpy8I GTNNAC 4 cut(s) 458, 516, 562, 811
HpyAV CCTTC 4 cut(s) 118, 363, 634, 757
HpyCH4III ACNGT 4 cut(s) 234, 568, 593, 650
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 3 cut(s) 197, 416, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 1022
HpyF3I CTNAG 2 cut(s) 439, 536
HpySE526I ACGT 1 cut(s) 870
Hsp92II CATG 5 cut(s) 325, 759, 772, 933, 1084
Kzo9I GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
Lsp1109I GCAGC 1 cut(s) 839
MaeI CTAG 4 cut(s) 110, 309, 389, 776
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 3 cut(s) 881, 1006, 1055
MalI GATC 8 cut(s) 314, 320, 342, 534, 616, 635, 794, 861
MboI GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
MboII GAAGA 8 cut(s) 134, 218, 237, 251, 698, 802, 815, 1010
MflI RGATCY 3 cut(s) 312, 614, 633
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 7 cut(s) 58, 65, 279, 350, 687, 840, 1060
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 4 cut(s) 344, 766, 911, 1034
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 474, 533, 633, 678
Mox20I TGGCCA 1 cut(s) 735
MroXI GAANNNNTTC 2 cut(s) 279, 663
MscI TGGCCA 1 cut(s) 735
MseI TTAA 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 4 cut(s) 134, 290, 824, 1028
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 4 cut(s) 134, 290, 824, 1028
MwoI GCNNNNNNNGC 2 cut(s) 194, 1022
NcoI CCATGG 1 cut(s) 755
NdeII GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
NlaIII CATG 5 cut(s) 325, 759, 772, 933, 1084
NlaIV GGNNCC 2 cut(s) 314, 635
NmuCI GTSAC 2 cut(s) 881, 1055
NspI RCATGY 2 cut(s) 933, 1084
PaeI GCATGC 1 cut(s) 933
PaeR7I CTCGAG 1 cut(s) 919
PciI ACATGT 1 cut(s) 1080
PctI GAATGC 1 cut(s) 750
PdmI GAANNNNTTC 2 cut(s) 279, 663
PflFI GACNNNGTC 1 cut(s) 872
PfoI TCCNGGA 2 cut(s) 132, 288
PkrI GCNGC 4 cut(s) 7, 10, 549, 829
PleI GAGTC 4 cut(s) 343, 766, 911, 1034
PpsI GAGTC 4 cut(s) 343, 766, 911, 1034
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 1080
PsiI TTATAA 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 4 cut(s) 132, 288, 822, 1026
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 4 cut(s) 132, 288, 822, 1026
PspN4I GGNNCC 2 cut(s) 314, 635
PspPI GGNCC 2 cut(s) 419, 1024
PspPPI RGGWCCY 1 cut(s) 419
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 3 cut(s) 312, 614, 633
PsyI GACNNNGTC 1 cut(s) 872
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 4 cut(s) 6, 9, 548, 828
Sau3AI GATC 8 cut(s) 312, 318, 340, 532, 614, 633, 792, 859
Sau96I GGNCC 2 cut(s) 419, 1024
SchI GAGTC 4 cut(s) 344, 766, 911, 1034
ScrFI CCNGG 4 cut(s) 134, 290, 824, 1028
Sfr274I CTCGAG 1 cut(s) 919
SinI GGWCC 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 919
SmlI CTYRAG 3 cut(s) 465, 745, 919
SmoI CTYRAG 3 cut(s) 465, 745, 919
SphI GCATGC 1 cut(s) 933
Sse9I AATT 7 cut(s) 58, 65, 279, 350, 687, 840, 1060
SsiI CCGC 1 cut(s) 548
SspI AATATT 1 cut(s) 577
SspMI CTAG 4 cut(s) 110, 309, 389, 776
StyD4I CCNGG 4 cut(s) 132, 288, 822, 1026
StyI CCWWGG 2 cut(s) 755, 1051
TaaI ACNGT 4 cut(s) 234, 568, 593, 650
TaiI ACGT 1 cut(s) 873
TaqI TCGA 3 cut(s) 920, 996, 1018
TasI AATT 7 cut(s) 58, 65, 279, 350, 687, 840, 1060
TauI GCSGC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 3 cut(s) 175, 856, 886
TseFI GTSAC 2 cut(s) 881, 1055
TseI GCWGC 3 cut(s) 5, 8, 827
Tsp45I GTSAC 2 cut(s) 881, 1055
TspDTI ATGAA 3 cut(s) 78, 363, 776
TspRI CASTG 3 cut(s) 175, 856, 886
Tth111I GACNNNGTC 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 279, 350
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 2 cut(s) 933, 1084
XhoI CTCGAG 1 cut(s) 919
XmnI GAANNNNTTC 2 cut(s) 279, 663
XspI CTAG 4 cut(s) 110, 309, 389, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.