Rmu_sc0004932.1_g000024

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004932.1
OG0000419
Physical Location & Seq
Forward (+)
98157 .. 99827
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004932.1_g000024.1.cds

Sequence Viewer

Length: 1356 bp
atgttatctccaaagacaagttccaaaagaaaatggaacttcactgaagatgatgaaaaaactgtgaagcagataaaaaatctctgcaaaaacctccctcctctacaacaaccagaggaaaatgatgaaattatcctccagatagatgcgagaaataagaactatcttccagacgccttgaccagagaaatggcaatgttcagccaaagagaagatgacgaaggtcgcaatcccaaaagcagaagaactgggaaagggcaagagtctgaagaggatcccctggaaaccaaagaaaaaatcctcaagaggtttctgctatgtcctaaaggactagccacaactgatcaatcccagggtaaaggattggctagctcgtctcaaacggcagacggtaaagactcatcaagaccgttaaaggctgttgctttgccaaaaagcaaactaactccaactggagttataaatgtttttaattatgaattaagaacctttgatgctcctgtgttcagaactggcaggagactagcttatcaccagaaagtaatcttcgataatctcctattttcttttcaagaaagaagcagtggtctgatgttcctagctctctttgccctagctgaagaactctacgaaaatggtagaccacagtttgaagaacttcatacacagcagagtgctgtcagaaaagaaaaaattcacttccttgaaaatccagaaagtcctagagtccctatcatggcacttaatgaatcagactggcatgaattccatagtctgataggaagtcataattctgaagaccgagttcctccaactctctttatcattgcaggaccatatgttggaagatacttaatcaatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctgtggactaaaacaaatgatgatcttaaaggtttgccgcctatcattgtcaacacagtcaaaaatattagaagaaatgactgcatgcttctactaaagttcagatccactcctccagaatggatccagaaggcaaacggtgaggttgagtatatttctctatatcattatgtgagaattattcaaaggaaatatctgcaacctgcctgtgttggttacaacggccagccaaactctagcatcccatggatgaaagccatggccctagaatacatcaagaagatcatctctgaagatatcaacaataccttcctggcggcaggagaaaaaactattatcactgcttacgatcatcctgacgtagtcagcagtgacctgttcctatctcttaccagaaaagagatagattcgacactggcatgcttacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

451

Amino Acids

51.7

Weight (kDa)

7.18

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
Acc36I ACCTGC 1 cut(s) 1135
AccB7I CCANNNNNTGG 1 cut(s) 842
AccI GTMKAC 1 cut(s) 640
AciI CCGC 2 cut(s) 962, 1241
AclWI GGATC 5 cut(s) 269, 282, 1023, 1042, 1055
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 2 cut(s) 693, 764
AcuI CTGAAG 5 cut(s) 66, 288, 639, 816, 1236
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 736, 842
AgsI TTSAA 5 cut(s) 572, 653, 707, 905, 1109
AjnI CCWGG 3 cut(s) 279, 351, 1236
AjuI GAANNNNNNNTTGG 1 cut(s) 36
AluBI AGCT 5 cut(s) 372, 527, 602, 617, 892
AluI AGCT 5 cut(s) 372, 527, 602, 617, 892
Alw26I GTCTC 2 cut(s) 381, 514
AlwI GGATC 5 cut(s) 269, 282, 1023, 1042, 1055
AoxI GGCC 2 cut(s) 1147, 1185
ApoI RAATTY 2 cut(s) 693, 764
Asp700I GAANNNNTTC 2 cut(s) 657, 693
AspS9I GGNCC 2 cut(s) 833, 1186
AsuHPI GGTGA 2 cut(s) 524, 1076
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 1 cut(s) 833
BamHI GGATCC 2 cut(s) 274, 1047
BbsI GAAGAC 1 cut(s) 804
BceAI ACGGC 2 cut(s) 399, 1162
BciT130I CCWGG 3 cut(s) 281, 353, 1238
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 381, 514
BfaI CTAG 8 cut(s) 332, 369, 524, 599, 614, 723, 1161, 1190
BfuAI ACCTGC 1 cut(s) 1135
BisI GCNGC 2 cut(s) 962, 1242
BlsI GCNGC 2 cut(s) 963, 1243
Bme1390I CCNGG 3 cut(s) 281, 353, 1238
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 2 cut(s) 833, 1186
BmiI GGNNCC 2 cut(s) 276, 1049
BmrFI CCNGG 3 cut(s) 281, 353, 1238
BmrI ACTGGG 1 cut(s) 258
BmsI GCATC 3 cut(s) 136, 484, 1173
BmtI GCTAGC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 804
BpmI CTGGAG 3 cut(s) 122, 474, 1023
BpuEI CTTGAG 2 cut(s) 287, 864
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 5 cut(s) 279, 351, 352, 1169, 1182
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 842
Bse1I ACTGG 5 cut(s) 253, 457, 517, 761, 1344
Bse3DI GCAATG 2 cut(s) 201, 825
BseBI CCWGG 3 cut(s) 281, 353, 1238
BseDI CCNNGG 5 cut(s) 279, 351, 352, 1169, 1182
BseGI GGATG 4 cut(s) 874, 1164, 1179, 1276
BseLI CCNNNNNNNGG 2 cut(s) 736, 842
BseMI GCAATG 2 cut(s) 201, 825
BseNI ACTGG 5 cut(s) 253, 457, 517, 761, 1344
BseRI GAGGAG 2 cut(s) 90, 1026
BshFI GGCC 2 cut(s) 1149, 1187
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 2 cut(s) 736, 842
BsmAI GTCTC 2 cut(s) 381, 514
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 2 cut(s) 1149, 1187
Bsp143I GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
Bsp19I CCATGG 2 cut(s) 1169, 1182
BspACI CCGC 2 cut(s) 962, 1241
BspANI GGCC 2 cut(s) 1149, 1187
BspLI GGNNCC 2 cut(s) 276, 1049
BspMI ACCTGC 1 cut(s) 1135
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 5 cut(s) 269, 282, 1023, 1042, 1055
BsrDI GCAATG 2 cut(s) 201, 825
BsrI ACTGG 5 cut(s) 253, 457, 517, 761, 1344
BssECI CCNNGG 5 cut(s) 279, 351, 352, 1169, 1182
BssMI GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 1169, 1182
Bst2UI CCWGG 3 cut(s) 281, 353, 1238
Bst4CI ACNGT 7 cut(s) 64, 392, 411, 648, 982, 1064, 1353
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 4 cut(s) 370, 1010, 1151, 1345
BstDSI CCRYGG 2 cut(s) 1169, 1182
BstF5I GGATG 4 cut(s) 874, 1164, 1179, 1276
BstKTI GATC 7 cut(s) 277, 346, 949, 1031, 1050, 1209, 1276
BstMAI GTCTC 2 cut(s) 381, 514
BstMBI GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 3 cut(s) 281, 353, 1238
BstNSI RCATGY 2 cut(s) 1012, 1347
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 3 cut(s) 279, 351, 1236
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 3 cut(s) 274, 1028, 1047
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 3 cut(s) 274, 1028, 1047
BsuRI GGCC 2 cut(s) 1149, 1187
BtgI CCRYGG 2 cut(s) 1169, 1182
BtsCI GGATG 4 cut(s) 874, 1164, 1179, 1276
BtsI GCAGTG 3 cut(s) 589, 1263, 1300
BtsIMutI CAGTG 5 cut(s) 42, 589, 1263, 1300, 1337
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 4 cut(s) 370, 1010, 1151, 1345
Cfr13I GGNCC 2 cut(s) 833, 1186
CseI GACGC 1 cut(s) 182
CviAII CATG 6 cut(s) 736, 761, 1009, 1170, 1183, 1344
DpnI GATC 7 cut(s) 276, 345, 948, 1030, 1049, 1208, 1275
DpnII GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
Eco130I CCWWGG 2 cut(s) 1169, 1182
Eco32I GATATC 1 cut(s) 1222
Eco47I GGWCC 1 cut(s) 833
Eco57I CTGAAG 5 cut(s) 66, 288, 639, 816, 1236
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 3 cut(s) 279, 351, 1236
EcoRV GATATC 1 cut(s) 1222
EcoT14I CCWWGG 2 cut(s) 1169, 1182
ErhI CCWWGG 2 cut(s) 1169, 1182
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 6 cut(s) 739, 764, 1012, 1173, 1186, 1347
FaqI GGGAC 1 cut(s) 713
FatI CATG 6 cut(s) 735, 760, 1008, 1169, 1182, 1343
FauNDI CATATG 1 cut(s) 838
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 962, 1242
FokI GGATG 4 cut(s) 861, 1151, 1186, 1263
Fsp4HI GCNGC 2 cut(s) 962, 1242
FspBI CTAG 8 cut(s) 332, 369, 524, 599, 614, 723, 1161, 1190
GluI GCNGC 2 cut(s) 962, 1242
GsuI CTGGAG 3 cut(s) 122, 474, 1023
HaeIII GGCC 2 cut(s) 1149, 1187
HgaI GACGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 6 cut(s) 739, 764, 1012, 1173, 1186, 1347
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 5 cut(s) 263, 398, 726, 749, 1331
HphI GGTGA 2 cut(s) 524, 1076
Hpy166II GTNNAC 4 cut(s) 641, 872, 930, 976
Hpy8I GTNNAC 4 cut(s) 641, 872, 930, 976
HpyAV CCTTC 3 cut(s) 215, 1048, 1243
HpyCH4III ACNGT 7 cut(s) 64, 392, 411, 648, 982, 1064, 1353
HpyCH4IV ACGT 1 cut(s) 1284
HpyCH4V TGCA 4 cut(s) 87, 830, 1008, 1123
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpySE526I ACGT 1 cut(s) 1284
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 6 cut(s) 739, 764, 1012, 1173, 1186, 1347
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
LmnI GCTCC 1 cut(s) 502
LweI GCATC 3 cut(s) 136, 484, 1173
MaeI CTAG 8 cut(s) 332, 369, 524, 599, 614, 723, 1161, 1190
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 2 cut(s) 1139, 1295
MalI GATC 7 cut(s) 276, 345, 948, 1030, 1049, 1208, 1275
MboI GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
MflI RGATCY 3 cut(s) 274, 1028, 1047
MluCI AATT 7 cut(s) 129, 472, 479, 693, 764, 790, 1101
MlyI GAGTC 3 cut(s) 272, 392, 735
MmeI TCCRAC 3 cut(s) 473, 823, 836
MroXI GAANNNNTTC 2 cut(s) 657, 693
MseI TTAA 6 cut(s) 413, 471, 482, 744, 854, 951
MslI CAYNNNNRTG 1 cut(s) 1342
MspR9I CCNGG 3 cut(s) 281, 353, 1238
MvaI CCWGG 3 cut(s) 281, 353, 1238
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 2 cut(s) 1169, 1182
NdeI CATATG 1 cut(s) 838
NdeII GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 6 cut(s) 739, 764, 1012, 1173, 1186, 1347
NlaIV GGNNCC 2 cut(s) 276, 1049
NmuCI GTSAC 1 cut(s) 1295
NspI RCATGY 2 cut(s) 1012, 1347
PaeI GCATGC 2 cut(s) 1012, 1347
PasI CCCWGGG 1 cut(s) 352
PdmI GAANNNNTTC 2 cut(s) 657, 693
PfeI GAWTC 2 cut(s) 749, 1331
PflFI GACNNNGTC 1 cut(s) 1286
PflMI CCANNNNNTGG 1 cut(s) 842
PkrI GCNGC 2 cut(s) 963, 1243
PleI GAGTC 3 cut(s) 271, 392, 734
PpsI GAGTC 3 cut(s) 271, 392, 734
PshAI GACNNNNGTC 1 cut(s) 222
PsiI TTATAA 1 cut(s) 461
Psp6I CCWGG 3 cut(s) 279, 351, 1236
PspGI CCWGG 3 cut(s) 279, 351, 1236
PspN4I GGNNCC 2 cut(s) 276, 1049
PspPI GGNCC 2 cut(s) 833, 1186
PsuI RGATCY 3 cut(s) 274, 1028, 1047
PsyI GACNNNGTC 1 cut(s) 1286
RseI CAYNNNNRTG 1 cut(s) 1342
SaqAI TTAA 6 cut(s) 413, 471, 482, 744, 854, 951
SatI GCNGC 2 cut(s) 962, 1242
Sau3AI GATC 7 cut(s) 274, 343, 946, 1028, 1047, 1206, 1273
Sau96I GGNCC 2 cut(s) 833, 1186
SchI GAGTC 3 cut(s) 272, 392, 735
ScrFI CCNGG 3 cut(s) 281, 353, 1238
SfaNI GCATC 3 cut(s) 136, 484, 1173
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 1 cut(s) 1342
SmlI CTYRAG 2 cut(s) 302, 879
SmoI CTYRAG 2 cut(s) 302, 879
SphI GCATGC 2 cut(s) 1012, 1347
Sse9I AATT 7 cut(s) 129, 472, 479, 693, 764, 790, 1101
SsiI CCGC 2 cut(s) 962, 1241
SspI AATATT 1 cut(s) 991
SspMI CTAG 8 cut(s) 332, 369, 524, 599, 614, 723, 1161, 1190
StyD4I CCNGG 3 cut(s) 279, 351, 1236
StyI CCWWGG 2 cut(s) 1169, 1182
TaaI ACNGT 7 cut(s) 64, 392, 411, 648, 982, 1064, 1353
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 2 cut(s) 549, 1334
TaqII GACCGA 1 cut(s) 816
TasI AATT 7 cut(s) 129, 472, 479, 693, 764, 790, 1101
TauI GCSGC 2 cut(s) 964, 1244
TfiI GAWTC 2 cut(s) 749, 1331
Tru1I TTAA 6 cut(s) 413, 471, 482, 744, 854, 951
Tru9I TTAA 6 cut(s) 413, 471, 482, 744, 854, 951
TscAI CASTG 5 cut(s) 49, 589, 1270, 1300, 1344
TseFI GTSAC 1 cut(s) 1295
Tsp45I GTSAC 1 cut(s) 1295
TspDTI ATGAA 7 cut(s) 69, 141, 492, 650, 762, 777, 1190
TspRI CASTG 5 cut(s) 49, 589, 1270, 1300, 1344
Tth111I GACNNNGTC 1 cut(s) 1286
Van91I CCANNNNNTGG 1 cut(s) 842
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 2 cut(s) 693, 764
XceI RCATGY 2 cut(s) 1012, 1347
XmiI GTMKAC 1 cut(s) 640
XmnI GAANNNNTTC 2 cut(s) 657, 693
XspI CTAG 8 cut(s) 332, 369, 524, 599, 614, 723, 1161, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.