Rmu_sc0000063.1_g000020

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000063.1
OG0000419
Physical Location & Seq
Reverse (-)
104874 .. 105781
908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000063.1_g000020.1.cds

Sequence Viewer

Length: 564 bp
atgttcccagctctctttgccttagctgaagaactctacgaaaatggaaggccacagttcgaagaagttcatacacagcagagtgctttcagatccactcctccagaatggatccagaaggcaaatggtgaagttgaatatattcctccatatcattatgtgagaatcattcaaaggaaatatcttcaaccagcctgtgtagggtataatggccaaccaaactcaagcattccgtggatgaaggacatgactctagaatatatcaaaaagatcatctctgaagatatccacaacactttcctggcagcaggagagaaaattatcatcactgcttacgatcatcctgacgtagtcagcagtgacctattcttatctctcaccaaaaaagagatagattcgacactggcatgcttaaggtgggtggaaaaacttgagaccgacaaccactacaagatgtatgttgatacagatgtcgaagacaatgcaacaactgttcgaatggcccaggcagataacgactcgtttgtccttggtcacaattcagaagctgacaagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

187

Amino Acids

21.54

Weight (kDa)

4.85

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AclWI GGATC 3 cut(s) 87, 106, 119
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 2 cut(s) 48, 300
AfiI CCNNNNNNNGG 1 cut(s) 201
AflII CTTAAG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 137, 173, 188
AjnI CCWGG 2 cut(s) 300, 504
AluBI AGCT 3 cut(s) 11, 26, 548
AluI AGCT 3 cut(s) 11, 26, 548
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 3 cut(s) 87, 106, 119
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 3 cut(s) 50, 211, 501
ApeKI GCWGC 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 66, 141
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 140, 370
AsuII TTCGAA 2 cut(s) 60, 496
BaeI ACNNNNGTAYC 2 cut(s) 456, 489
BalI TGGCCA 1 cut(s) 213
BamHI GGATCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 464, 498
BciT130I CCWGG 2 cut(s) 302, 506
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 254
BfrI CTTAAG 1 cut(s) 412
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 302, 506
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 302, 506
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 2 cut(s) 60, 496
BpuEI CTTGAG 2 cut(s) 208, 452
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 233, 504, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 408
BseBI CCWGG 2 cut(s) 302, 506
BseDI CCNNGG 3 cut(s) 233, 504, 529
BseGI GGATG 2 cut(s) 243, 340
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 408
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 317
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 52, 213, 503
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 228
BsnI GGCC 3 cut(s) 52, 213, 503
Bso31I GGTCTC 1 cut(s) 428
Bsp119I TTCGAA 2 cut(s) 60, 496
Bsp143I GATC 4 cut(s) 92, 111, 270, 337
BspANI GGCC 3 cut(s) 52, 213, 503
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 3 cut(s) 87, 106, 119
BspT104I TTCGAA 2 cut(s) 60, 496
BspTI CTTAAG 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 428
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 3 cut(s) 233, 504, 529
BssMI GATC 4 cut(s) 92, 111, 270, 337
BssT1I CCWWGG 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 302, 506
Bst4CI ACNGT 2 cut(s) 57, 493
BstAFI CTTAAG 1 cut(s) 412
BstBI TTCGAA 2 cut(s) 60, 496
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 243, 340
BstKTI GATC 4 cut(s) 95, 114, 273, 340
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 4 cut(s) 92, 111, 270, 337
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 302, 506
BstNSI RCATGY 2 cut(s) 411, 562
BstSCI CCNGG 2 cut(s) 300, 504
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 92, 111
BstYI RGATCY 2 cut(s) 92, 111
BsuRI GGCC 3 cut(s) 52, 213, 503
BtgI CCRYGG 1 cut(s) 233
BtsCI GGATG 2 cut(s) 243, 340
BtsI GCAGTG 2 cut(s) 327, 364
BtsIMutI CAGTG 3 cut(s) 327, 364, 401
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 502
CviAII CATG 3 cut(s) 247, 408, 559
CviJI RGCY 7 cut(s) 11, 26, 52, 194, 213, 503, 548
CviKI_1 RGCY 7 cut(s) 11, 26, 52, 194, 213, 503, 548
DdeI CTNAG 1 cut(s) 22
DpnI GATC 4 cut(s) 94, 113, 272, 339
DpnII GATC 4 cut(s) 92, 111, 270, 337
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 48, 300
EcoRII CCWGG 2 cut(s) 300, 504
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 3 cut(s) 250, 411, 562
FatI CATG 3 cut(s) 246, 407, 558
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 250, 327
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 3 cut(s) 52, 213, 503
Hin1II CATG 3 cut(s) 250, 411, 562
HinfI GANTC 4 cut(s) 165, 250, 395, 518
HphI GGTGA 2 cut(s) 140, 370
Hpy188I TCNGA 3 cut(s) 92, 280, 544
Hpy188III TCNNGA 4 cut(s) 104, 115, 254, 344
HpyAV CCTTC 3 cut(s) 42, 112, 235
HpyCH4III ACNGT 2 cut(s) 57, 493
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 250, 411, 562
Kzo9I GATC 4 cut(s) 92, 111, 270, 337
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 359, 533
MalI GATC 4 cut(s) 94, 113, 272, 339
MboI GATC 4 cut(s) 92, 111, 270, 337
MboII GAAGA 5 cut(s) 41, 74, 176, 293, 488
MflI RGATCY 2 cut(s) 92, 111
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 318, 538
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 2 cut(s) 244, 512
MnlI CCTC 2 cut(s) 111, 156
Mox20I TGGCCA 1 cut(s) 213
MroXI GAANNNNTTC 2 cut(s) 66, 141
MscI TGGCCA 1 cut(s) 213
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 412
MspR9I CCNGG 2 cut(s) 302, 506
Mva1269I GAATGC 1 cut(s) 228
MvaI CCWGG 2 cut(s) 302, 506
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 4 cut(s) 92, 111, 270, 337
NlaIII CATG 3 cut(s) 250, 411, 562
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 2 cut(s) 359, 533
NspI RCATGY 2 cut(s) 411, 562
NspV TTCGAA 2 cut(s) 60, 496
PaeI GCATGC 1 cut(s) 411
PciI ACATGT 1 cut(s) 558
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 2 cut(s) 66, 141
PfeI GAWTC 2 cut(s) 165, 395
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 2 cut(s) 244, 512
PpsI GAGTC 2 cut(s) 244, 512
PscI ACATGT 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 300, 504
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 2 cut(s) 300, 504
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 2 cut(s) 92, 111
PsyI GACNNNGTC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 4 cut(s) 92, 111, 270, 337
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 2 cut(s) 244, 512
ScrFI CCNGG 2 cut(s) 302, 506
SetI ASST 6 cut(s) 13, 28, 351, 366, 419, 550
SfuI TTCGAA 2 cut(s) 60, 496
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 3 cut(s) 223, 412, 431
SmoI CTYRAG 3 cut(s) 223, 412, 431
SphI GCATGC 1 cut(s) 411
Sse9I AATT 2 cut(s) 318, 538
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 300, 504
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 2 cut(s) 57, 493
TaiI ACGT 1 cut(s) 351
TaqI TCGA 4 cut(s) 60, 398, 474, 496
TaqII GACCGA 1 cut(s) 452
TasI AATT 2 cut(s) 318, 538
TfiI GAWTC 2 cut(s) 165, 395
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 3 cut(s) 334, 364, 408
TseFI GTSAC 2 cut(s) 359, 533
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 2 cut(s) 359, 533
TspDTI ATGAA 2 cut(s) 59, 254
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 3 cut(s) 334, 364, 408
Tth111I GACNNNGTC 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 412
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 2 cut(s) 411, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmnI GAANNNNTTC 2 cut(s) 66, 141
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.