Rmu_sc0002693.1_g000016

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002693.1
OG0000419
Physical Location & Seq
Forward (+)
41495 .. 43743
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002693.1_g000016.1.cds

Sequence Viewer

Length: 906 bp
atgcttcaaggactcgagatcgagcctgattcttcttctgaacttctacatttagctttggatcatcatatgtccggtctcagaaaagaaataagaagacgacgaataacaggcatcagaaattgcaagagagagggggttgttaccggtgagattgttggatttgatgttggcctgagcgcgatcggactagaactcggagttgttggggtcgacggcgatggcctgggtgtagaggtcaacggcgagctcagagtggtctcgatgaaggccttcgctatttcccagatccaattaggttttggtcggggaccttatgttggaagatacggagttgatgttcagagtgaacatcctcaagaacacaagctttggcttgttgaaaatgccaaaaatatcagaaaaaatgactgtactcttagactgaagttcagatctactccaccagaattgattcatagaacaaacggtgaagttgaatacatttctccttatcattatgtgagaattattcaaaaaagatatcttcagcccgcctgtgttcggtacaatggccagccaaattcaaatattccatggatgaaggccatgtctctagaatacatcaaaaagatcatccaagaagatacaagaaatactttcctggcagcaggagaaaaaacaattatcactgcttatgatcatcctgaagcaatcagcagttacatcttcatatctctcataagaaaagagatagactcgacactagtgtgcttacagtgggttgaaaagcttgaaaaagacaaccactacaagatgtatgtagatatagatgtcgagaaaaatgcaactactgctagaatggcccggatggatgacaactcctttgtccttggccacaactcagaaacggacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

6.38

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 534
AclWI GGATC 2 cut(s) 69, 283
AcoI YGGCCR 2 cut(s) 553, 874
AcsI RAATTY 1 cut(s) 562
AcuI CTGAAG 3 cut(s) 446, 512, 708
AfaI GTAC 2 cut(s) 415, 548
AfiI CCNNNNNNNGG 2 cut(s) 320, 543
AflIII ACRYGT 1 cut(s) 900
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 7 cut(s) 8, 383, 479, 515, 567, 767, 776
AhlI ACTAGT 1 cut(s) 745
AjnI CCWGG 2 cut(s) 225, 642
AleI CACNNNNGTG 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 4 cut(s) 56, 250, 370, 772
AluI AGCT 4 cut(s) 56, 250, 370, 772
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 3 cut(s) 83, 265, 597
AlwI GGATC 2 cut(s) 69, 283
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 7 cut(s) 172, 223, 270, 553, 585, 843, 874
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 562
ArsI GACNNNNNNTTYG 2 cut(s) 848, 880
AsiGI ACCGGT 1 cut(s) 146
Asp700I GAANNNNTTC 2 cut(s) 272, 453
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 311, 844
AsuC2I CCSGG 1 cut(s) 847
AsuHPI GGTGA 2 cut(s) 161, 482
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 311
BalI TGGCCA 2 cut(s) 555, 876
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 659
BccI CCATC 2 cut(s) 215, 844
BceAI ACGGC 2 cut(s) 232, 259
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 227, 644
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 847
BcoDI GTCTC 3 cut(s) 83, 265, 597
BcuI ACTAGT 1 cut(s) 745
BfaI CTAG 4 cut(s) 191, 596, 746, 837
BglII AGATCT 1 cut(s) 434
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme1390I CCNGG 3 cut(s) 227, 644, 847
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 2 cut(s) 311, 844
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 3 cut(s) 227, 644, 847
BmsI GCATC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 722, 754
Bpu10I CCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 847
BsaI GGTCTC 2 cut(s) 83, 265
BsaJI CCNNGG 3 cut(s) 226, 575, 871
BsaWI WCCGGW 2 cut(s) 74, 146
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 543
Bse118I RCCGGY 1 cut(s) 146
BseBI CCWGG 2 cut(s) 227, 644
BseDI CCNNGG 3 cut(s) 226, 575, 871
BseGI GGATG 6 cut(s) 352, 585, 615, 682, 855, 859
BseLI CCNNNNNNNGG 2 cut(s) 320, 543
BseMII CTCAG 4 cut(s) 94, 167, 265, 897
BseXI GCAGC 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 7 cut(s) 174, 225, 272, 555, 587, 845, 876
BshTI ACCGGT 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 3 cut(s) 75, 147, 847
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 320, 543
BsmAI GTCTC 3 cut(s) 83, 265, 597
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 7 cut(s) 174, 225, 272, 555, 587, 845, 876
Bso31I GGTCTC 2 cut(s) 83, 265
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
Bsp19I CCATGG 1 cut(s) 575
BspACI CCGC 1 cut(s) 534
BspANI GGCC 7 cut(s) 174, 225, 272, 555, 587, 845, 876
BspCNI CTCAG 4 cut(s) 93, 168, 264, 896
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 2 cut(s) 69, 283
BspTNI GGTCTC 2 cut(s) 83, 265
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 226, 575, 871
BssMI GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
BssT1I CCWWGG 2 cut(s) 575, 871
Bst2UI CCWGG 2 cut(s) 227, 644
Bst4CI ACNGT 3 cut(s) 413, 470, 759
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 3 cut(s) 248, 534, 557
BstDEI CTNAG 5 cut(s) 80, 176, 251, 419, 883
BstDSI CCRYGG 1 cut(s) 575
BstF5I GGATG 6 cut(s) 352, 585, 615, 682, 855, 859
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 7 cut(s) 21, 64, 186, 291, 437, 615, 682
BstMAI GTCTC 3 cut(s) 83, 265, 597
BstMBI GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 833, 842
BstNI CCWGG 2 cut(s) 227, 644
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 3 cut(s) 225, 642, 845
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 659
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 2 cut(s) 288, 434
BstYI RGATCY 2 cut(s) 288, 434
BsuRI GGCC 7 cut(s) 174, 225, 272, 555, 587, 845, 876
BtgI CCRYGG 1 cut(s) 575
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 6 cut(s) 352, 585, 615, 682, 855, 859
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 2 cut(s) 669, 764
Cac8I GCNNGC 3 cut(s) 248, 534, 557
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 311, 844
Csp6I GTAC 2 cut(s) 414, 547
CspAI ACCGGT 1 cut(s) 146
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 3 cut(s) 576, 589, 901
CviQI GTAC 2 cut(s) 414, 547
DdeI CTNAG 5 cut(s) 80, 176, 251, 419, 883
DpnI GATC 7 cut(s) 20, 63, 185, 290, 436, 614, 681
DpnII GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
EaeI YGGCCR 2 cut(s) 553, 874
Ecl136II GAGCTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 575, 871
Eco147I AGGCCT 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 2 cut(s) 83, 265
Eco32I GATATC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 3 cut(s) 446, 512, 708
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 225, 642
EcoRV GATATC 1 cut(s) 524
EcoT14I CCWWGG 2 cut(s) 575, 871
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 2 cut(s) 575, 871
FaeI CATG 3 cut(s) 579, 592, 904
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FaqI GGGAC 1 cut(s) 324
FatI CATG 3 cut(s) 575, 588, 900
FauI CCCGC 1 cut(s) 541
FauNDI CATATG 1 cut(s) 69
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 6 cut(s) 339, 592, 602, 669, 862, 866
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 648
FspBI CTAG 4 cut(s) 191, 596, 746, 837
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 648
HaeIII GGCC 7 cut(s) 174, 225, 272, 555, 587, 845, 876
HapII CCGG 3 cut(s) 75, 147, 847
HhaI GCGC 1 cut(s) 182
Hin1II CATG 3 cut(s) 579, 592, 904
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 214, 241
HindII GTYRAC 2 cut(s) 214, 241
HindIII AAGCTT 2 cut(s) 368, 770
HinfI GANTC 4 cut(s) 12, 29, 454, 737
HpaII CCGG 3 cut(s) 75, 147, 847
HphI GGTGA 2 cut(s) 161, 482
Hpy166II GTNNAC 3 cut(s) 214, 241, 350
Hpy188III TCNNGA 6 cut(s) 16, 262, 359, 596, 686, 817
Hpy8I GTNNAC 3 cut(s) 214, 241, 350
Hpy99I CGWCG 2 cut(s) 105, 218
HpyAV CCTTC 3 cut(s) 262, 283, 577
HpyCH4III ACNGT 3 cut(s) 413, 470, 759
HpyCH4V TGCA 2 cut(s) 126, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 833, 842
HpyF3I CTNAG 5 cut(s) 80, 176, 251, 419, 883
Hsp92II CATG 3 cut(s) 579, 592, 904
HspAI GCGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
Lsp1109I GCAGC 1 cut(s) 659
LweI GCATC 1 cut(s) 123
MaeI CTAG 4 cut(s) 191, 596, 746, 837
MaeIII GTNAC 2 cut(s) 142, 701
MalI GATC 7 cut(s) 20, 63, 185, 290, 436, 614, 681
MboI GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
MboII GAAGA 7 cut(s) 24, 27, 108, 336, 518, 635, 700
MflI RGATCY 2 cut(s) 288, 434
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 2 cut(s) 555, 876
MluCI AATT 6 cut(s) 121, 293, 449, 507, 562, 663
MluNI TGGCCA 2 cut(s) 555, 876
MlyI GAGTC 2 cut(s) 6, 731
MmeI TCCRAC 2 cut(s) 139, 301
MnlI CCTC 3 cut(s) 127, 229, 366
Mox20I TGGCCA 2 cut(s) 555, 876
MroXI GAANNNNTTC 2 cut(s) 272, 453
MscI TGGCCA 2 cut(s) 555, 876
MslI CAYNNNNRTG 1 cut(s) 748
Msp20I TGGCCA 2 cut(s) 555, 876
MspI CCGG 3 cut(s) 75, 147, 847
MspR9I CCNGG 3 cut(s) 227, 644, 847
MvaI CCWGG 2 cut(s) 227, 644
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 833, 842
NciI CCSGG 1 cut(s) 847
NcoI CCATGG 1 cut(s) 575
NdeI CATATG 1 cut(s) 69
NdeII GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
NlaIII CATG 3 cut(s) 579, 592, 904
NlaIV GGNNCC 1 cut(s) 312
NspI RCATGY 1 cut(s) 904
OliI CACNNNNGTG 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 14
PceI AGGCCT 1 cut(s) 272
PciI ACATGT 1 cut(s) 900
PdmI GAANNNNTTC 2 cut(s) 272, 453
PfeI GAWTC 2 cut(s) 29, 454
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 1 cut(s) 649
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 2 cut(s) 6, 731
PpsI GAGTC 2 cut(s) 6, 731
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 225, 642
PspGI CCWGG 2 cut(s) 225, 642
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 311, 844
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 2 cut(s) 288, 434
PvuI CGATCG 1 cut(s) 186
RsaI GTAC 2 cut(s) 415, 548
RsaNI GTAC 2 cut(s) 414, 547
RseI CAYNNNNRTG 1 cut(s) 748
SacI GAGCTC 1 cut(s) 252
SalI GTCGAC 1 cut(s) 212
SatI GCNGC 1 cut(s) 648
Sau3AI GATC 7 cut(s) 18, 61, 183, 288, 434, 612, 679
Sau96I GGNCC 2 cut(s) 311, 844
SchI GAGTC 2 cut(s) 6, 731
ScrFI CCNGG 3 cut(s) 227, 644, 847
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 58, 240, 252, 301, 316, 372, 774
SfaNI GCATC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 748
SmlI CTYRAG 2 cut(s) 14, 357
SmoI CTYRAG 2 cut(s) 14, 357
SpeI ACTAGT 1 cut(s) 745
Sse9I AATT 6 cut(s) 121, 293, 449, 507, 562, 663
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 1 cut(s) 534
SspI AATATT 1 cut(s) 571
SspMI CTAG 4 cut(s) 191, 596, 746, 837
SstI GAGCTC 1 cut(s) 252
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 3 cut(s) 225, 642, 845
StyI CCWWGG 2 cut(s) 575, 871
TaaI ACNGT 3 cut(s) 413, 470, 759
TaqI TCGA 6 cut(s) 15, 21, 213, 263, 740, 816
TasI AATT 6 cut(s) 121, 293, 449, 507, 562, 663
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 2 cut(s) 29, 454
TscAI CASTG 2 cut(s) 676, 764
TseI GCWGC 1 cut(s) 647
TspDTI ATGAA 4 cut(s) 281, 446, 596, 700
TspGWI ACGGA 2 cut(s) 345, 905
TspRI CASTG 2 cut(s) 676, 764
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 1 cut(s) 562
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 1 cut(s) 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XhoI CTCGAG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 2 cut(s) 272, 453
XspI CTAG 4 cut(s) 191, 596, 746, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.