Rmu_sc0006248.1_g000001

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006248.1
OG0000419
Physical Location & Seq
Reverse (-)
9751 .. 10836
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006248.1_g000001.1.cds

Sequence Viewer

Length: 1086 bp
atggctgttgctttgccaaaaagcaaaccaactccaactggagttataaatgtttttaattatgaattaagaacctttattgatcctatgttcaaaactggcaggaggctagcttaccaccagaaagcaatcttggataaccttttattttcctttcaagaaagaaacagtggtatcatgttcccagctctgttcgcattagctgaagaactccacgaaaatgctagaccacagaatgaagaaattcatatacatcagagtgctgttagaagtgaagagattcactatcttgaaaatccaaaaagtgctagagttcctatcatagcactaaaagaatcagattggcttgaattccataatctgattggaagccataattttgaagactgtattactccaaccttcttcattgttgcaggaccttatgttggaagatacggagttaatgttcaaagtgaacatcctcaagaacacaagctttggcttgttgaaaatggttttgtccataatctatggaccaaaacaaatgatgatctcaaaggcctaccccctatcatcatcaacatagtcaaaaatgtcagaaaaaatgactgtactcttagactgaagttcatatctactccaccagaatggattcataaaacaaacggtgaagttgaatacatttctccttatcattatgtgagaattattcaaaaaagatatcttcagcccgcctgtgctggattcaatggccagccaaattcaagtattccatggatgaaggccatgtctctcgaatacatcaagaaggtcatccaagaagatacaagaaatactttcctggcagcaagagaaaaaacaataatcactgcgtatgatcatcttgaagcaatcaacaatgacatcttcatgtctctcataagaaaagagatagactcgacactggcatgcttacagtgggttaaaaaacttgaaaatgacaaccattacaagatgtatgtagatacagatgtcgaggaaaatgcaactatcgccagaatggctaggatggatagcaactcatttgtcctaggccacaactcagaaacagacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

361

Amino Acids

41.77

Weight (kDa)

6.21

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 47
AciI CCGC 1 cut(s) 714
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 3 cut(s) 243, 350, 742
AcuI CTGAAG 3 cut(s) 225, 626, 692
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 1080
AjnI CCWGG 1 cut(s) 822
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AloI GAACNNNNNNTCC 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 113, 188, 203, 478
AluI AGCT 4 cut(s) 113, 188, 203, 478
Alw26I GTCTC 2 cut(s) 777, 900
AlwI GGATC 1 cut(s) 77
AoxI GGCC 4 cut(s) 541, 733, 765, 1054
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 3 cut(s) 243, 350, 742
Asp700I GAANNNNTTC 3 cut(s) 243, 279, 633
AspA2I CCTAGG 1 cut(s) 1051
AspS9I GGNCC 2 cut(s) 419, 516
AsuHPI GGTGA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 2 cut(s) 419, 516
AvrII CCTAGG 1 cut(s) 1051
BaeI ACNNNNGTAYC 4 cut(s) 157, 190, 978, 1011
BalI TGGCCA 1 cut(s) 735
BbsI GAAGAC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 839
BccI CCATC 1 cut(s) 1024
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 1 cut(s) 824
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 2 cut(s) 777, 900
BfaI CTAG 5 cut(s) 110, 225, 309, 1026, 1052
BglI GCCNNNNNGGC 1 cut(s) 1022
BisI GCNGC 1 cut(s) 828
BlnI CCTAGG 1 cut(s) 1051
BlsI GCNGC 1 cut(s) 829
Bme1390I CCNGG 1 cut(s) 824
Bme18I GGWCC 2 cut(s) 419, 516
BmgT120I GGNCC 2 cut(s) 419, 516
BmrFI CCNGG 1 cut(s) 824
BmtI GCTAGC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 755, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 43, 103, 930
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 2 cut(s) 755, 1051
BseGI GGATG 4 cut(s) 460, 765, 795, 1035
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 1077
BseNI ACTGG 3 cut(s) 43, 103, 930
BseXI GCAGC 1 cut(s) 839
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 4 cut(s) 543, 735, 767, 1056
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 777, 900
BsnI GGCC 4 cut(s) 543, 735, 767, 1056
Bsp143I GATC 3 cut(s) 82, 532, 859
Bsp19I CCATGG 1 cut(s) 755
BspACI CCGC 1 cut(s) 714
BspANI GGCC 4 cut(s) 543, 735, 767, 1056
BspCNI CTCAG 1 cut(s) 1076
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 77
BsrI ACTGG 3 cut(s) 43, 103, 930
BssECI CCNNGG 2 cut(s) 755, 1051
BssMI GATC 3 cut(s) 82, 532, 859
BssT1I CCWWGG 2 cut(s) 755, 1051
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 5 cut(s) 170, 389, 593, 650, 939
Bst6I CTCTTC 1 cut(s) 270
BstC8I GCNNGC 4 cut(s) 111, 714, 737, 931
BstDEI CTNAG 2 cut(s) 599, 1063
BstDSI CCRYGG 1 cut(s) 755
BstF5I GGATG 4 cut(s) 460, 765, 795, 1035
BstKTI GATC 3 cut(s) 85, 535, 862
BstMAI GTCTC 2 cut(s) 777, 900
BstMBI GATC 3 cut(s) 82, 532, 859
BstMWI GCNNNNNNNGC 3 cut(s) 194, 1013, 1022
BstNI CCWGG 1 cut(s) 824
BstNSI RCATGY 2 cut(s) 933, 1084
BstSCI CCNGG 1 cut(s) 822
BstV1I GCAGC 1 cut(s) 839
BstV2I GAAGAC 1 cut(s) 390
BstXI CCANNNNNNTGG 1 cut(s) 630
BsuRI GGCC 4 cut(s) 543, 735, 767, 1056
BtgI CCRYGG 1 cut(s) 755
BtsCI GGATG 4 cut(s) 460, 765, 795, 1035
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 175, 849, 923, 944
Cac8I GCNNGC 4 cut(s) 111, 714, 737, 931
Cfr13I GGNCC 2 cut(s) 419, 516
Csp6I GTAC 1 cut(s) 594
CviAII CATG 6 cut(s) 178, 756, 769, 892, 930, 1081
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 2 cut(s) 599, 1063
DpnI GATC 3 cut(s) 84, 534, 861
DpnII GATC 3 cut(s) 82, 532, 859
EaeI YGGCCR 1 cut(s) 733
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 2 cut(s) 755, 1051
Eco147I AGGCCT 1 cut(s) 543
Eco32I GATATC 1 cut(s) 704
Eco47I GGWCC 2 cut(s) 419, 516
Eco57I CTGAAG 3 cut(s) 225, 626, 692
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 822
EcoRV GATATC 1 cut(s) 704
EcoT14I CCWWGG 2 cut(s) 755, 1051
ErhI CCWWGG 2 cut(s) 755, 1051
FaeI CATG 6 cut(s) 181, 759, 772, 895, 933, 1084
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FatI CATG 6 cut(s) 177, 755, 768, 891, 929, 1080
FauI CCCGC 1 cut(s) 721
FbaI TGATCA 1 cut(s) 859
Fnu4HI GCNGC 1 cut(s) 828
FokI GGATG 4 cut(s) 447, 772, 782, 1042
Fsp4HI GCNGC 1 cut(s) 828
FspBI CTAG 5 cut(s) 110, 225, 309, 1026, 1052
GluI GCNGC 1 cut(s) 828
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 4 cut(s) 543, 735, 767, 1056
Hin1II CATG 6 cut(s) 181, 759, 772, 895, 933, 1084
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 5 cut(s) 280, 335, 634, 726, 917
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 5 cut(s) 258, 340, 363, 581, 1066
Hpy188III TCNNGA 6 cut(s) 158, 290, 467, 776, 787, 866
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 3 cut(s) 412, 757, 784
HpyCH4III ACNGT 5 cut(s) 170, 389, 593, 650, 939
HpyCH4V TGCA 2 cut(s) 416, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 1013, 1022
HpyF3I CTNAG 2 cut(s) 599, 1063
Hsp92II CATG 6 cut(s) 181, 759, 772, 895, 933, 1084
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 3 cut(s) 82, 532, 859
Lsp1109I GCAGC 1 cut(s) 839
MaeI CTAG 5 cut(s) 110, 225, 309, 1026, 1052
MalI GATC 3 cut(s) 84, 534, 861
MboI GATC 3 cut(s) 82, 532, 859
MboII GAAGA 9 cut(s) 218, 251, 287, 395, 397, 444, 698, 815, 880
MlsI TGGCCA 1 cut(s) 735
MluCI AATT 7 cut(s) 58, 65, 243, 350, 376, 687, 742
MluNI TGGCCA 1 cut(s) 735
MlyI GAGTC 1 cut(s) 911
MmeI TCCRAC 3 cut(s) 59, 409, 422
MnlI CCTC 3 cut(s) 99, 474, 991
Mox20I TGGCCA 1 cut(s) 735
MroXI GAANNNNTTC 3 cut(s) 243, 279, 633
MscI TGGCCA 1 cut(s) 735
MseI TTAA 4 cut(s) 57, 68, 444, 945
MslI CAYNNNNRTG 5 cut(s) 219, 258, 628, 890, 928
Msp20I TGGCCA 1 cut(s) 735
MspR9I CCNGG 1 cut(s) 824
MvaI CCWGG 1 cut(s) 824
MwoI GCNNNNNNNGC 3 cut(s) 194, 1013, 1022
NcoI CCATGG 1 cut(s) 755
NdeII GATC 3 cut(s) 82, 532, 859
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 6 cut(s) 181, 759, 772, 895, 933, 1084
NspI RCATGY 2 cut(s) 933, 1084
PaeI GCATGC 1 cut(s) 933
PceI AGGCCT 1 cut(s) 543
PciI ACATGT 1 cut(s) 1080
PdmI GAANNNNTTC 3 cut(s) 243, 279, 633
PfeI GAWTC 4 cut(s) 280, 335, 634, 726
PkrI GCNGC 1 cut(s) 829
PleI GAGTC 1 cut(s) 911
PpsI GAGTC 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 419
PscI ACATGT 1 cut(s) 1080
PsiI TTATAA 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 822
PspPI GGNCC 2 cut(s) 419, 516
PspPPI RGGWCCY 1 cut(s) 419
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 5 cut(s) 219, 258, 628, 890, 928
SaqAI TTAA 4 cut(s) 57, 68, 444, 945
SatI GCNGC 1 cut(s) 828
Sau3AI GATC 3 cut(s) 82, 532, 859
Sau96I GGNCC 2 cut(s) 419, 516
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 1 cut(s) 824
SetI ASST 9 cut(s) 77, 115, 144, 190, 205, 404, 424, 480, 795
SinI GGWCC 2 cut(s) 419, 516
SmiMI CAYNNNNRTG 5 cut(s) 219, 258, 628, 890, 928
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
SphI GCATGC 1 cut(s) 933
Sse9I AATT 7 cut(s) 58, 65, 243, 350, 376, 687, 742
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 1 cut(s) 714
SspMI CTAG 5 cut(s) 110, 225, 309, 1026, 1052
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 822
StyI CCWWGG 2 cut(s) 755, 1051
TaaI ACNGT 5 cut(s) 170, 389, 593, 650, 939
TaqI TCGA 3 cut(s) 777, 920, 996
TasI AATT 7 cut(s) 58, 65, 243, 350, 376, 687, 742
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 4 cut(s) 280, 335, 634, 726
Tru1I TTAA 4 cut(s) 57, 68, 444, 945
Tru9I TTAA 4 cut(s) 57, 68, 444, 945
TscAI CASTG 4 cut(s) 175, 856, 930, 944
TseI GCWGC 1 cut(s) 827
TspDTI ATGAA 8 cut(s) 78, 236, 252, 397, 601, 626, 776, 880
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 4 cut(s) 175, 856, 930, 944
VpaK11BI GGWCC 2 cut(s) 419, 516
XapI RAATTY 3 cut(s) 243, 350, 742
XceI RCATGY 2 cut(s) 933, 1084
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmaJI CCTAGG 1 cut(s) 1051
XmnI GAANNNNTTC 3 cut(s) 243, 279, 633
XspI CTAG 5 cut(s) 110, 225, 309, 1026, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.