Rmu_sc0005728.1_g000009

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005728.1
OG0000419
Physical Location & Seq
Reverse (-)
40818 .. 42107
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005728.1_g000009.1.cds

Sequence Viewer

Length: 1290 bp
atgacgacgaaggtcgtaatcccagaagcagaagaactgggaaagaacaggaacctgaagaggaccccaaagaaaccaaagaaaaaaatcctcaaaaggtttctgctaagtccaaaaggcttggcctcaactgatcaatcgcagggtaaaggattggctagcccgtctcaaaccgcagacggtaaaggtacatcaagaccgttgatggctgcagctttgccaaaaagcagaccaactccaactagagttataaatgtttttaattatgaattaagaacatttgatactcttgtgttcagaactggcaggagattagcttatcatcataaggcaatcctggacaatcttttatttgcctttcaagaaagaagcagtggtctgatgttcccagctctctttgcattagctgaagaactctacaagaatggtaggccacaggttgaagaaactcatacacagcagagtgctgtaagaaaagaaaaaattcacttccttgaaagtcctgaaggtgctagggtcccaatcataacactcaatgaatcagattggcatgaattccacaatctgatcggaagacataatccagaagacttagttcctccaactctctttatcgtttcaggaccatatgttggaagatacttagtcaatgttcagagtgaacatcctcaagaacacaagctctggcttgttgaaaatggttttgtccataatctttggaccaaaacaaatgatgatctgaagggtttgccgcctatcattgtcaacacagtcaaaaatataagaaagaatgattgtatgcttcgtctgaagttcagatccactcctccagaatggattcagaaggcaaacgatgaagttgaatatattcctccctatcattatgtgagaattattcagaggaaatatcttcaaccagcctgtgtagggtataatggccaaccaaactcaagcattccatggatgaaggccatgactctagaatatatcaagaagattatctctgaagatatccacaataccttcctggcagcaggagagaaaatcatcatcactgcttacgatcatcctgacgtagtcagcagtgacctattcctatctcttactagaaaggagatagattcgacactggcatgcttacggtgggtggaaaaacttgaaactgacaaccactacaagatgtatgttgatacagatgtcgaagataatgctactactattcaaatggcccaggcagacaacaattcctttgtccttggccacaattcagaaacagacaagaatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

429

Amino Acids

49.07

Weight (kDa)

8.92

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 632
AciI CCGC 2 cut(s) 174, 752
AclWI GGATC 1 cut(s) 813
AcoI YGGCCR 2 cut(s) 937, 1258
AcsI RAATTY 2 cut(s) 483, 554
AcuI CTGAAG 6 cut(s) 77, 429, 525, 761, 830, 1026
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 632, 927
AgsI TTSAA 8 cut(s) 362, 443, 497, 695, 863, 914, 1160, 1223
AjnI CCWGG 3 cut(s) 336, 1026, 1230
AluBI AGCT 5 cut(s) 215, 317, 392, 407, 682
AluI AGCT 5 cut(s) 215, 317, 392, 407, 682
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 813
AoxI GGCC 6 cut(s) 123, 431, 937, 969, 1227, 1258
ApeKI GCWGC 3 cut(s) 209, 212, 1031
ApoI RAATTY 2 cut(s) 483, 554
Asp700I GAANNNNTTC 3 cut(s) 483, 837, 867
AspS9I GGNCC 5 cut(s) 63, 517, 623, 720, 1228
AsuNHI GCTAGC 1 cut(s) 158
AvaII GGWCC 4 cut(s) 63, 517, 623, 720
BaeI ACNNNNGTAYC 4 cut(s) 276, 309, 1182, 1215
BalI TGGCCA 2 cut(s) 939, 1260
BbsI GAAGAC 2 cut(s) 580, 594
BbvI GCAGC 3 cut(s) 196, 224, 1043
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 3 cut(s) 338, 1028, 1232
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 5 cut(s) 159, 243, 513, 980, 1107
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 4 cut(s) 210, 213, 752, 1032
BlsI GCNGC 4 cut(s) 211, 214, 753, 1033
Bme1390I CCNGG 3 cut(s) 338, 1028, 1232
Bme18I GGWCC 4 cut(s) 63, 517, 623, 720
BmgT120I GGNCC 5 cut(s) 63, 517, 623, 720, 1228
BmiI GGNNCC 4 cut(s) 53, 65, 518, 519
BmrFI CCNGG 3 cut(s) 338, 1028, 1232
BmrI ACTGGG 1 cut(s) 47
BmtI GCTAGC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 580, 594
BpmI CTGGAG 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 654, 934
BsaJI CCNNGG 3 cut(s) 959, 1230, 1255
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 927
Bse1I ACTGG 3 cut(s) 42, 307, 1134
BseBI CCWGG 3 cut(s) 338, 1028, 1232
BseDI CCNNGG 3 cut(s) 959, 1230, 1255
BseGI GGATG 3 cut(s) 664, 969, 1066
BseLI CCNNNNNNNGG 2 cut(s) 632, 927
BseNI ACTGG 3 cut(s) 42, 307, 1134
BseRI GAGGAG 1 cut(s) 816
BseXI GCAGC 3 cut(s) 196, 224, 1043
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 6 cut(s) 125, 433, 939, 971, 1229, 1260
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 632, 927
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 954
BsnI GGCC 6 cut(s) 125, 433, 939, 971, 1229, 1260
Bsp143I GATC 5 cut(s) 133, 567, 736, 818, 1063
Bsp19I CCATGG 1 cut(s) 959
BspACI CCGC 2 cut(s) 174, 752
BspANI GGCC 6 cut(s) 125, 433, 939, 971, 1229, 1260
BspLI GGNNCC 4 cut(s) 53, 65, 518, 519
BspMAI CTGCAG 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 813
BsrI ACTGG 3 cut(s) 42, 307, 1134
BssECI CCNNGG 3 cut(s) 959, 1230, 1255
BssMI GATC 5 cut(s) 133, 567, 736, 818, 1063
BssT1I CCWWGG 2 cut(s) 959, 1255
Bst2UI CCWGG 3 cut(s) 338, 1028, 1232
Bst4CI ACNGT 4 cut(s) 182, 201, 772, 1143
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 160, 1135
BstDEI CTNAG 3 cut(s) 107, 592, 643
BstDSI CCRYGG 1 cut(s) 959
BstF5I GGATG 3 cut(s) 664, 969, 1066
BstKTI GATC 5 cut(s) 136, 570, 739, 821, 1066
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 5 cut(s) 133, 567, 736, 818, 1063
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 3 cut(s) 338, 1028, 1232
BstNSI RCATGY 1 cut(s) 1137
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 336, 1026, 1230
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 196, 224, 1043
BstV2I GAAGAC 2 cut(s) 580, 594
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
BsuRI GGCC 6 cut(s) 125, 433, 939, 971, 1229, 1260
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 3 cut(s) 664, 969, 1066
BtsI GCAGTG 3 cut(s) 379, 1053, 1090
BtsIMutI CAGTG 4 cut(s) 379, 1053, 1090, 1127
Cac8I GCNNGC 2 cut(s) 160, 1135
Cfr13I GGNCC 5 cut(s) 63, 517, 623, 720, 1228
Csp6I GTAC 1 cut(s) 189
CviAII CATG 4 cut(s) 551, 960, 973, 1134
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 107, 592, 643
DpnI GATC 5 cut(s) 135, 569, 738, 820, 1065
DpnII GATC 5 cut(s) 133, 567, 736, 818, 1063
EaeI YGGCCR 2 cut(s) 937, 1258
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 959, 1255
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 4 cut(s) 63, 517, 623, 720
Eco57I CTGAAG 6 cut(s) 77, 429, 525, 761, 830, 1026
EcoO109I RGGNCCY 2 cut(s) 63, 517
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 3 cut(s) 336, 1026, 1230
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 2 cut(s) 959, 1255
ErhI CCWWGG 2 cut(s) 959, 1255
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 4 cut(s) 554, 963, 976, 1137
FaqI GGGAC 1 cut(s) 503
FatI CATG 4 cut(s) 550, 959, 972, 1133
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 210, 213, 752, 1032
FokI GGATG 3 cut(s) 651, 976, 1053
Fsp4HI GCNGC 4 cut(s) 210, 213, 752, 1032
FspBI CTAG 5 cut(s) 159, 243, 513, 980, 1107
GluI GCNGC 4 cut(s) 210, 213, 752, 1032
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 6 cut(s) 125, 433, 939, 971, 1229, 1260
Hin1II CATG 4 cut(s) 554, 963, 976, 1137
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HinfI GANTC 4 cut(s) 539, 838, 976, 1121
Hpy166II GTNNAC 2 cut(s) 662, 766
Hpy8I GTNNAC 2 cut(s) 662, 766
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 4, 500, 736, 838, 961, 1033
HpyCH4III ACNGT 4 cut(s) 182, 201, 772, 1143
HpyCH4IV ACGT 1 cut(s) 1074
HpyCH4V TGCA 2 cut(s) 212, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 3 cut(s) 107, 592, 643
HpySE526I ACGT 1 cut(s) 1074
Hsp92II CATG 4 cut(s) 554, 963, 976, 1137
KflI GGGWCCC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 133, 567, 736, 818, 1063
Lsp1109I GCAGC 3 cut(s) 196, 224, 1043
MaeI CTAG 5 cut(s) 159, 243, 513, 980, 1107
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 1 cut(s) 1085
MalI GATC 5 cut(s) 135, 569, 738, 820, 1065
MboI GATC 5 cut(s) 133, 567, 736, 818, 1063
MflI RGATCY 1 cut(s) 818
MlsI TGGCCA 2 cut(s) 939, 1260
MluCI AATT 7 cut(s) 262, 269, 483, 554, 891, 1243, 1264
MluNI TGGCCA 2 cut(s) 939, 1260
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 3 cut(s) 263, 613, 626
MnlI CCTC 8 cut(s) 54, 101, 136, 609, 678, 837, 882, 894
Mox20I TGGCCA 2 cut(s) 939, 1260
MroXI GAANNNNTTC 3 cut(s) 483, 837, 867
MscI TGGCCA 2 cut(s) 939, 1260
MseI TTAA 2 cut(s) 261, 272
MslI CAYNNNNRTG 1 cut(s) 1132
Msp20I TGGCCA 2 cut(s) 939, 1260
MspR9I CCNGG 3 cut(s) 338, 1028, 1232
Mva1269I GAATGC 1 cut(s) 954
MvaI CCWGG 3 cut(s) 338, 1028, 1232
MwoI GCNNNNNNNGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 959
NdeI CATATG 1 cut(s) 628
NdeII GATC 5 cut(s) 133, 567, 736, 818, 1063
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 554, 963, 976, 1137
NlaIV GGNNCC 4 cut(s) 53, 65, 518, 519
NmuCI GTSAC 1 cut(s) 1085
NspI RCATGY 1 cut(s) 1137
PaeI GCATGC 1 cut(s) 1137
PctI GAATGC 1 cut(s) 954
PdmI GAANNNNTTC 3 cut(s) 483, 837, 867
PfeI GAWTC 3 cut(s) 539, 838, 1121
PflFI GACNNNGTC 1 cut(s) 1076
PflMI CCANNNNNTGG 1 cut(s) 632
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 4 cut(s) 211, 214, 753, 1033
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
PpuMI RGGWCCY 2 cut(s) 63, 517
PshAI GACNNNNGTC 1 cut(s) 11
PsiI TTATAA 1 cut(s) 251
Psp5II RGGWCCY 2 cut(s) 63, 517
Psp6I CCWGG 3 cut(s) 336, 1026, 1230
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 3 cut(s) 336, 1026, 1230
PspN4I GGNNCC 4 cut(s) 53, 65, 518, 519
PspPI GGNCC 5 cut(s) 63, 517, 623, 720, 1228
PspPPI RGGWCCY 2 cut(s) 63, 517
PsrI GAACNNNNNNTAC 2 cut(s) 268, 300
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 818
PsyI GACNNNGTC 1 cut(s) 1076
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 1132
SaqAI TTAA 2 cut(s) 261, 272
SatI GCNGC 4 cut(s) 210, 213, 752, 1032
Sau3AI GATC 5 cut(s) 133, 567, 736, 818, 1063
Sau96I GGNCC 5 cut(s) 63, 517, 623, 720, 1228
SchI GAGTC 1 cut(s) 970
ScrFI CCNGG 3 cut(s) 338, 1028, 1232
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 4 cut(s) 63, 517, 623, 720
SmiMI CAYNNNNRTG 1 cut(s) 1132
SmlI CTYRAG 2 cut(s) 669, 949
SmoI CTYRAG 2 cut(s) 669, 949
SphI GCATGC 1 cut(s) 1137
Sse9I AATT 7 cut(s) 262, 269, 483, 554, 891, 1243, 1264
SsiI CCGC 2 cut(s) 174, 752
SspMI CTAG 5 cut(s) 159, 243, 513, 980, 1107
StyD4I CCNGG 3 cut(s) 336, 1026, 1230
StyI CCWWGG 2 cut(s) 959, 1255
TaaI ACNGT 4 cut(s) 182, 201, 772, 1143
TaiI ACGT 1 cut(s) 1077
TaqI TCGA 2 cut(s) 1124, 1200
TasI AATT 7 cut(s) 262, 269, 483, 554, 891, 1243, 1264
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 3 cut(s) 539, 838, 1121
Tru1I TTAA 2 cut(s) 261, 272
Tru9I TTAA 2 cut(s) 261, 272
TscAI CASTG 4 cut(s) 379, 1060, 1090, 1134
TseFI GTSAC 1 cut(s) 1085
TseI GCWGC 3 cut(s) 209, 212, 1031
Tsp45I GTSAC 1 cut(s) 1085
TspDTI ATGAA 5 cut(s) 282, 552, 567, 870, 980
TspRI CASTG 4 cut(s) 379, 1060, 1090, 1134
Tth111I GACNNNGTC 1 cut(s) 1076
Van91I CCANNNNNTGG 1 cut(s) 632
VpaK11BI GGWCC 4 cut(s) 63, 517, 623, 720
XapI RAATTY 2 cut(s) 483, 554
XbaI TCTAGA 1 cut(s) 979
XceI RCATGY 1 cut(s) 1137
XmnI GAANNNNTTC 3 cut(s) 483, 837, 867
XspI CTAG 5 cut(s) 159, 243, 513, 980, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.