RLG00000008553

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000419
Physical Location & Seq
Forward (+)
31925042 .. 31925483
442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008553

Sequence Viewer

Length: 348 bp
ATGTTCCTAGCCTTGTCTGCCTTAGCTGAAGAACTTAATGAGGATGCTAGACCCTTTGTTGCAAAACTCTATGAAAATTCCAAACAGCAGAGTGATGTCCAAATGGAAAAAACTAAAATTCAATACATTGAAGATCTTGAAAGTGCTAGAGTTCCTATCTTAGCACTAAAAGAATCAAAGTGGTTCAATTTCCACAATCTCCTTGGAAGTCCTAATTATGGTCTTCCTGAAACTCTCTTTACTATCCCTGGACCTTACGTGGGAAGATATGTAGTTGATGTTCAAAGTGAACATCCTCAAGAACAAAAGCTCTGCCTTGTTGAAAATGGTTTTGTCCATAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.17

Weight (kDa)

4.97

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 76, 117
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 218, 260
AgsI TTSAA 6 cut(s) 122, 131, 140, 187, 284, 323
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 26, 310
AluI AGCT 2 cut(s) 26, 310
ApoI RAATTY 2 cut(s) 76, 117
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 4 cut(s) 8, 48, 147, 346
BglII AGATCT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 202, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 260
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 202, 247
BseGI GGATG 2 cut(s) 49, 292
BseLI CCNNNNNNNGG 2 cut(s) 218, 260
BslI CCNNNNNNNGG 2 cut(s) 218, 260
Bsp143I GATC 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 202, 247
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 22, 160
BstF5I GGATG 2 cut(s) 49, 292
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BtsCI GGATG 2 cut(s) 49, 292
Cfr13I GGNCC 1 cut(s) 251
CviJI RGCY 3 cut(s) 11, 26, 310
CviKI_1 RGCY 3 cut(s) 11, 26, 310
DdeI CTNAG 2 cut(s) 22, 160
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaiI YATR 4 cut(s) 72, 219, 270, 339
FokI GGATG 2 cut(s) 56, 279
FspBI CTAG 4 cut(s) 8, 48, 147, 346
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 137, 227, 299
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 22, 160
HpySE526I ACGT 1 cut(s) 258
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 234, 240, 261
LweI GCATC 1 cut(s) 34
MaeI CTAG 4 cut(s) 8, 48, 147, 346
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 41, 143, 215, 276
MflI RGATCY 1 cut(s) 133
MluCI AATT 4 cut(s) 76, 117, 187, 214
MnlI CCTC 2 cut(s) 34, 306
MseI TTAA 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 251
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 36
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 249
SetI ASST 4 cut(s) 28, 256, 261, 312
SfaNI GCATC 1 cut(s) 34
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 4 cut(s) 76, 117, 187, 214
SspMI CTAG 4 cut(s) 8, 48, 147, 346
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 261
TasI AATT 4 cut(s) 76, 117, 187, 214
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 76, 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XspI CTAG 4 cut(s) 8, 48, 147, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.