Rmu_sc0015649.1_g000002

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015649.1
OG0000419
Physical Location & Seq
Forward (+)
14115 .. 15023
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015649.1_g000002.1.cds

Sequence Viewer

Length: 834 bp
atgttcccagctctgttcgcactagttgaagaactccatgaaaatactagaccacagcaagaagaagttcatatacagcagagtgttgttagaagtgaaaaaattcactatcttgaagatccagaaagtgctagagttcctatcatagcaatcaaagaatcagattggtttgacttccataatctgattggaagtcataattctgaaaactgtattcctccaaccctcttcattgttgcaggatcttatgttggaagatatggtaccaaaacaaatgatgatctcaaaggcctaccccctatcatcgtcaacacagtcaaaaatgttaggaaaaatgactgcacccttagactaaagttcagatctactccgccagaatggattcatagaacaaacggtgaagttgaatacatttctccttattattatgtgagaattattcaaaccagacatcttcagcccgcctgtgttggatacaatggtcagccaaattcaagcattccatggatgaaggccatgtctctcgaatacatcaagaagatcatccaagaagatacaagaaatattttcctggcagcaggagaaaaaacaattatcactgcttatgatcatcttgaagcaatcagtagtgacctcttcatatctatcacaagaaaagagatagattcgacactggcatgcttacagtgggttgaaaaactagaaaaagacaaccactacaagatgtatatggatacagatgtcgaggaaaatgcaacaactgtcagaatggccaggatggatagcaactcctttgtcctcggtcataactcagaaacgaacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

277

Amino Acids

31.97

Weight (kDa)

5.6

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 2 cut(s) 371, 462
AclWI GGATC 2 cut(s) 113, 250
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 2 cut(s) 102, 490
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 7 cut(s) 29, 116, 407, 443, 495, 617, 695
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 2 cut(s) 570, 773
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 2 cut(s) 113, 250
AoxI GGCC 3 cut(s) 289, 513, 771
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 2 cut(s) 102, 490
Asp700I GAANNNNTTC 3 cut(s) 66, 102, 381
Asp718I GGTACC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 410
BaeI ACNNNNGTAYC 4 cut(s) 466, 499, 726, 759
BalI TGGCCA 1 cut(s) 773
BanI GGYRCC 1 cut(s) 263
BarI GAAGNNNNNNTAC 4 cut(s) 57, 89, 247, 279
BbvI GCAGC 1 cut(s) 587
BccI CCATC 1 cut(s) 772
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 2 cut(s) 572, 775
BciVI GTATCC 2 cut(s) 467, 727
BclI TGATCA 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 525
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 4 cut(s) 23, 48, 132, 701
BfuI GTATCC 2 cut(s) 467, 727
BglII AGATCT 1 cut(s) 362
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
Bme1390I CCNGG 2 cut(s) 572, 775
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 2 cut(s) 572, 775
BsaJI CCNNGG 2 cut(s) 503, 799
Bse1I ACTGG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 572, 775
BseDI CCNNGG 2 cut(s) 503, 799
BseGI GGATG 3 cut(s) 513, 543, 783
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 587
BseYI CCCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 3 cut(s) 291, 515, 773
BshNI GGYRCC 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 3 cut(s) 291, 515, 773
Bsp143I GATC 6 cut(s) 118, 242, 280, 362, 540, 607
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 2 cut(s) 371, 462
BspANI GGCC 3 cut(s) 291, 515, 773
BspCNI CTCAG 1 cut(s) 824
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 2 cut(s) 113, 250
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 678
BssECI CCNNGG 2 cut(s) 503, 799
BssMI GATC 6 cut(s) 118, 242, 280, 362, 540, 607
BssT1I CCWWGG 1 cut(s) 503
Bst2UI CCWGG 2 cut(s) 572, 775
Bst4CI ACNGT 5 cut(s) 212, 316, 398, 687, 763
Bst6I CTCTTC 2 cut(s) 233, 641
BstC8I GCNNGC 2 cut(s) 462, 679
BstDEI CTNAG 2 cut(s) 347, 811
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 513, 543, 783
BstKTI GATC 6 cut(s) 121, 245, 283, 365, 543, 610
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 6 cut(s) 118, 242, 280, 362, 540, 607
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 572, 775
BstNSI RCATGY 2 cut(s) 681, 832
BstSCI CCNGG 2 cut(s) 570, 773
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 3 cut(s) 118, 242, 362
BstYI RGATCY 3 cut(s) 118, 242, 362
BsuI GTATCC 2 cut(s) 467, 727
BsuRI GGCC 3 cut(s) 291, 515, 773
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 3 cut(s) 513, 543, 783
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 597, 671, 692
Cac8I GCNNGC 2 cut(s) 462, 679
Csp6I GTAC 1 cut(s) 264
CviAII CATG 5 cut(s) 38, 504, 517, 678, 829
CviJI RGCY 6 cut(s) 11, 291, 460, 487, 515, 773
CviKI_1 RGCY 6 cut(s) 11, 291, 460, 487, 515, 773
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 347, 811
DpnI GATC 6 cut(s) 120, 244, 282, 364, 542, 609
DpnII GATC 6 cut(s) 118, 242, 280, 362, 540, 607
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 2 cut(s) 233, 641
EarI CTCTTC 2 cut(s) 233, 641
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 503
Eco147I AGGCCT 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 440
EcoRII CCWGG 2 cut(s) 570, 773
EcoT14I CCWWGG 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 5 cut(s) 41, 507, 520, 681, 832
FatI CATG 5 cut(s) 37, 503, 516, 677, 828
FauI CCCGC 1 cut(s) 469
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 3 cut(s) 520, 530, 790
Fsp4HI GCNGC 1 cut(s) 576
FspBI CTAG 4 cut(s) 23, 48, 132, 701
GluI GCNGC 1 cut(s) 576
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 3 cut(s) 291, 515, 773
Hin1II CATG 5 cut(s) 41, 507, 520, 681, 832
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 3 cut(s) 158, 382, 665
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 6 cut(s) 163, 186, 205, 362, 767, 814
Hpy188III TCNNGA 5 cut(s) 113, 122, 524, 535, 614
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 5 cut(s) 212, 316, 398, 687, 763
HpyCH4V TGCA 3 cut(s) 239, 342, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 347, 811
Hsp92II CATG 5 cut(s) 41, 507, 520, 681, 832
KpnI GGTACC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 6 cut(s) 118, 242, 280, 362, 540, 607
Lsp1109I GCAGC 1 cut(s) 587
MaeI CTAG 4 cut(s) 23, 48, 132, 701
MaeIII GTNAC 1 cut(s) 629
MalI GATC 6 cut(s) 120, 244, 282, 364, 542, 609
MboI GATC 6 cut(s) 118, 242, 280, 362, 540, 607
MboII GAAGA 9 cut(s) 41, 74, 128, 220, 267, 446, 550, 563, 628
MflI RGATCY 3 cut(s) 118, 242, 362
MlsI TGGCCA 1 cut(s) 773
MluCI AATT 5 cut(s) 102, 199, 435, 490, 591
MluNI TGGCCA 1 cut(s) 773
MmeI TCCRAC 3 cut(s) 232, 245, 451
MnlI CCTC 5 cut(s) 228, 236, 644, 739, 809
Mox20I TGGCCA 1 cut(s) 773
MroXI GAANNNNTTC 3 cut(s) 66, 102, 381
MscI TGGCCA 1 cut(s) 773
MslI CAYNNNNRTG 1 cut(s) 676
Msp20I TGGCCA 1 cut(s) 773
MspR9I CCNGG 2 cut(s) 572, 775
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 572, 775
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 503
NdeII GATC 6 cut(s) 118, 242, 280, 362, 540, 607
NlaIII CATG 5 cut(s) 41, 507, 520, 681, 832
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 2 cut(s) 681, 832
PaeI GCATGC 1 cut(s) 681
PceI AGGCCT 1 cut(s) 291
PciI ACATGT 1 cut(s) 828
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 3 cut(s) 66, 102, 381
PfeI GAWTC 3 cut(s) 158, 382, 665
PkrI GCNGC 1 cut(s) 577
PscI ACATGT 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 570, 773
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 2 cut(s) 570, 773
PspN4I GGNNCC 1 cut(s) 265
PsuI RGATCY 3 cut(s) 118, 242, 362
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 676
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 6 cut(s) 118, 242, 280, 362, 540, 607
ScrFI CCNGG 2 cut(s) 572, 775
SetI ASST 2 cut(s) 13, 636
SmiMI CAYNNNNRTG 1 cut(s) 676
SpeI ACTAGT 1 cut(s) 22
SphI GCATGC 1 cut(s) 681
Sse9I AATT 5 cut(s) 102, 199, 435, 490, 591
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 2 cut(s) 371, 462
SspI AATATT 1 cut(s) 565
SspMI CTAG 4 cut(s) 23, 48, 132, 701
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 570, 773
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 5 cut(s) 212, 316, 398, 687, 763
TaqI TCGA 3 cut(s) 525, 668, 744
TaqII GACCGA 1 cut(s) 791
TasI AATT 5 cut(s) 102, 199, 435, 490, 591
TfiI GAWTC 3 cut(s) 158, 382, 665
TscAI CASTG 3 cut(s) 604, 678, 692
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 6 cut(s) 54, 59, 220, 374, 524, 628
TspRI CASTG 3 cut(s) 604, 678, 692
XapI RAATTY 2 cut(s) 102, 490
XceI RCATGY 2 cut(s) 681, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmnI GAANNNNTTC 3 cut(s) 66, 102, 381
XspI CTAG 4 cut(s) 23, 48, 132, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.