Rmu_sc0001959.1_g000012

Enzymatic polyprotein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001959.1
OG0000419
Physical Location & Seq
Forward (+)
53471 .. 53962
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001959.1_g000012.1.cds

Sequence Viewer

Length: 492 bp
atgctaagacttaagttctggtccacccctccaaaatggatccaaaagggaaatagagatgttgaatatatttctccatatcattatgtgaggatcattcaaagaagatatctgcagcctgcctgtgttggatatcatggccagccaaattcaagcattccatggatgaaggtcatgtctctagaatatatgaaaaagatcatcgaagaagatacaagaaataccttcctggtagcaaaagaaaaaataataatcactgcctacgatcatcctgacgtaatcagcagtgacctcttcctctctctcacaagaaatgaaatagactcgacactggcatgcttacagtgggtggaaaagcttgaaagcaacaaccactacaagatgtatgtctatacagatgtcgaagataatgcaactactaccagaatggttgggatggatgacaactcctttgtccttggccacaactcagaaacggacgagaacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A3 RVT_1

Protein Analysis

163

Amino Acids

19.21

Weight (kDa)

5.71

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 34, 47, 101
AcoI YGGCCR 2 cut(s) 139, 460
AcsI RAATTY 1 cut(s) 148
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 4 cut(s) 65, 101, 153, 362
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 3 cut(s) 34, 47, 101
AoxI GGCC 2 cut(s) 139, 460
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BalI TGGCCA 2 cut(s) 141, 462
BamHI GGATCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 430
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 161, 457
Bse1I ACTGG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 161, 457
BseGI GGATG 4 cut(s) 171, 268, 441, 445
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 141, 462
BsmAI GTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 141, 462
Bsp143I GATC 4 cut(s) 39, 93, 198, 265
Bsp19I CCATGG 1 cut(s) 161
BspANI GGCC 2 cut(s) 141, 462
BspCNI CTCAG 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 3 cut(s) 34, 47, 101
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 161, 457
BssMI GATC 4 cut(s) 39, 93, 198, 265
BssT1I CCWWGG 2 cut(s) 161, 457
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 299
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 120, 143, 337
BstDEI CTNAG 2 cut(s) 5, 469
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 4 cut(s) 171, 268, 441, 445
BstKTI GATC 4 cut(s) 42, 96, 201, 268
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 39, 93, 198, 265
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 2 cut(s) 339, 490
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 2 cut(s) 141, 462
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 4 cut(s) 171, 268, 441, 445
BtsI GCAGTG 2 cut(s) 255, 292
BtsIMutI CAGTG 4 cut(s) 255, 292, 329, 350
Cac8I GCNNGC 3 cut(s) 120, 143, 337
Cfr13I GGNCC 1 cut(s) 21
CviAII CATG 5 cut(s) 137, 162, 175, 336, 487
CviJI RGCY 5 cut(s) 118, 141, 145, 358, 462
CviKI_1 RGCY 5 cut(s) 118, 141, 145, 358, 462
DdeI CTNAG 2 cut(s) 5, 469
DpnI GATC 4 cut(s) 41, 95, 200, 267
DpnII GATC 4 cut(s) 39, 93, 198, 265
EaeI YGGCCR 2 cut(s) 139, 460
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 161, 457
Eco32I GATATC 2 cut(s) 110, 134
Eco47I GGWCC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 2 cut(s) 110, 134
EcoT14I CCWWGG 2 cut(s) 161, 457
ErhI CCWWGG 2 cut(s) 161, 457
FaeI CATG 5 cut(s) 140, 165, 178, 339, 490
FatI CATG 5 cut(s) 136, 161, 174, 335, 486
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 4 cut(s) 178, 255, 448, 452
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 2 cut(s) 141, 462
Hin1II CATG 5 cut(s) 140, 165, 178, 339, 490
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 2 cut(s) 182, 272
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 2 cut(s) 163, 235
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 115, 413
HpyF3I CTNAG 2 cut(s) 5, 469
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 5 cut(s) 140, 165, 178, 339, 490
Kzo9I GATC 4 cut(s) 39, 93, 198, 265
LpnPI CCDG 9 cut(s) 4, 132, 136, 155, 215, 242, 285, 317, 436
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 41, 95, 200, 267
MboI GATC 4 cut(s) 39, 93, 198, 265
MboII GAAGA 5 cut(s) 117, 218, 221, 286, 416
MflI RGATCY 1 cut(s) 39
MlsI TGGCCA 2 cut(s) 141, 462
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 2 cut(s) 141, 462
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 4 cut(s) 39, 84, 302, 308
Mox20I TGGCCA 2 cut(s) 141, 462
MscI TGGCCA 2 cut(s) 141, 462
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 2 cut(s) 141, 462
MspCI CTTAAG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 161
NdeII GATC 4 cut(s) 39, 93, 198, 265
NlaIII CATG 5 cut(s) 140, 165, 178, 339, 490
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 2 cut(s) 339, 490
PaeI GCATGC 1 cut(s) 339
PciI ACATGT 1 cut(s) 486
PctI GAATGC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PscI ACATGT 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 21
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 334
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 4 cut(s) 39, 93, 198, 265
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 230
SetI ASST 5 cut(s) 174, 227, 279, 294, 360
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 339
Sse9I AATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 2 cut(s) 161, 457
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 204, 326, 402
TasI AATT 1 cut(s) 148
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 4 cut(s) 262, 292, 336, 350
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 182, 206, 330
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 4 cut(s) 262, 292, 336, 350
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 21
XapI RAATTY 1 cut(s) 148
XbaI TCTAGA 1 cut(s) 181
XceI RCATGY 2 cut(s) 339, 490
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.