RchiOBHm_Chr6g0244511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000419
Physical Location & Seq
Forward (+)
555387 .. 556367
981 bp
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UTR
Exon/CDS
Intron
PRQ21914

Sequence Viewer

Length: 246 bp
ATGGAGGGGAAAGGTTTAGGAGGAGGAGGAGCTGGCTTGGGAGGAGATGGTTTCGCTGAGATGGAGGAGAAATCGGGTCGGGTCGGGCTTTCGGTCTCCGAATATTTGAAGCTCGAGACCGAACCGAAAATACACATTCGAGTCGGGCTTTGTACCGAACCGAGATTTTTCATACCAAAACCGAACCGAATCGGGCTTTTTTACTCGGTCCGGGTCGGGTCTTCGGGTCCGGACGCCCACCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.55

Weight (kDa)

6.72

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 229
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 32, 112
AluI AGCT 2 cut(s) 32, 112
Alw26I GTCTC 2 cut(s) 100, 110
Ama87I CYCGRG 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 208, 227
AsuC2I CCSGG 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 2 cut(s) 208, 227
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 2 cut(s) 41, 55
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 100, 110
BfaI CTAG 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 208, 227
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 208, 227
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 100, 110
BsaWI WCCGGW 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 229
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 5 cut(s) 36, 39, 42, 57, 80
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 2 cut(s) 211, 230
BsmAI GTCTC 2 cut(s) 100, 110
Bso31I GGTCTC 2 cut(s) 100, 110
BsoBI CYCGRG 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 228
BspTNI GGTCTC 2 cut(s) 100, 110
BssNI GRCGYC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 100, 110
BstSCI CCNGG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 208, 227
CpoI CGGWCCG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 153
CspI CGGWCCG 1 cut(s) 208
CviJI RGCY 6 cut(s) 32, 36, 88, 112, 148, 196
CviKI_1 RGCY 6 cut(s) 32, 36, 88, 112, 148, 196
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 57
Eco31I GGTCTC 2 cut(s) 100, 110
Eco47I GGWCC 2 cut(s) 208, 227
Eco88I CYCGRG 1 cut(s) 113
FaiI YATR 1 cut(s) 173
FspBI CTAG 1 cut(s) 244
HapII CCGG 2 cut(s) 211, 230
Hin1I GRCGYC 1 cut(s) 234
HinfI GANTC 2 cut(s) 141, 189
HpaII CCGG 2 cut(s) 211, 230
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 115, 230
HpyF3I CTNAG 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 229
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 18, 224
MaeI CTAG 1 cut(s) 244
MboII GAAGA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 5 cut(s) 14, 17, 20, 35, 58
MroI TCCGGA 1 cut(s) 229
MspI CCGG 2 cut(s) 211, 230
MspR9I CCNGG 1 cut(s) 212
NciI CCSGG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 113
PfeI GAWTC 1 cut(s) 189
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 208, 227
PsrI GAACNNNNNNTAC 2 cut(s) 114, 146
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
Rsr2I CGGWCCG 1 cut(s) 208
RsrII CGGWCCG 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 208, 227
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 212
SetI ASST 3 cut(s) 16, 34, 114
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 208, 227
SlaI CTCGAG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SspI AATATT 1 cut(s) 104
SspMI CTAG 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 210
TaqI TCGA 2 cut(s) 114, 139
TaqII GACCGA 3 cut(s) 82, 134, 196
TfiI GAWTC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 208, 227
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.