RLG00000002693

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000419
Physical Location & Seq
Forward (+)
38237991 .. 38238503
513 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002693

Sequence Viewer

Length: 417 bp
ATGGGTTGGCGTTTCTGTACCTCCCTCCATCTCCGATGGAGTAAAATTCCAACCCTAGTGTCGCAACTAGAGTGTACGGTCGAGGCCGTGCCTTCCTTTTTTCCTTTTGTCTCCAAGACGTTGACATCCACCACCTGGGTTGAGTCCATGACCCGCTCTCTTCCTCTGATTGCTACGAACAAGGGATCGAATTTGTCCTCGGTTCACCGCTCTGGAATGATGGTTGCGAGGGAATGGAGGGTTTGGGATCCAGGGCTCCTACCGGCGTCATGGAGGTCTAATCTGGGCACTAGACCAAGTGGTGGATTGGATGTTGTACCAACAGCGGCTCCGGACTGGTGGTTTCGCCTCTATGAGATGGCGGTGGTGAGAACTCGTGGGGAGGATGCTGCTCTTCCTGAGGCTATTTCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.48

Weight (kDa)

9.29

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0378961 RchiOBHm_Chr3g0452751 RchiOBHm_Chr6g0244511 RchiOBHm_Chr6g0265751 RchiOBHm_Chr7g0243311
rosa_laevigata RLG00000002693 RLG00000003022 RLG00000006790 RLG00000008553
rosa_multiflora Rmu_sc0000063.1_g000020 Rmu_sc0000239.1_g000008 Rmu_sc0000365.1_g000035 Rmu_sc0000431.1_g000029 Rmu_sc0000528.1_g000019 Rmu_sc0000536.1_g000014 Rmu_sc0000663.1_g000004 Rmu_sc0000753.1_g000003 Rmu_sc0000754.1_g000014 Rmu_sc0000805.1_g000036 Rmu_sc0000974.1_g000024 Rmu_sc0000976.1_g000012 Rmu_sc0001097.1_g000047 Rmu_sc0001122.1_g000010 Rmu_sc0001207.1_g000032 Rmu_sc0001214.1_g000001 Rmu_sc0001323.1_g000017 Rmu_sc0001673.1_g000006 Rmu_sc0001785.1_g000018 Rmu_sc0001959.1_g000012 Rmu_sc0002073.1_g000006 Rmu_sc0002076.1_g000005 Rmu_sc0002094.1_g000004 Rmu_sc0002132.1_g000057 Rmu_sc0002170.1_g000036 Rmu_sc0002187.1_g000010 Rmu_sc0002316.1_g000037 Rmu_sc0002324.1_g000009 Rmu_sc0002367.1_g000001 Rmu_sc0002482.1_g000001 Rmu_sc0002547.1_g000017 Rmu_sc0002578.1_g000012 Rmu_sc0002693.1_g000016 Rmu_sc0002706.1_g000004 Rmu_sc0002759.1_g000032 Rmu_sc0002765.1_g000002 Rmu_sc0002845.1_g000026 Rmu_sc0002895.1_g000014 Rmu_sc0002983.1_g000013 Rmu_sc0003187.1_g000017 Rmu_sc0003249.1_g000029 Rmu_sc0003342.1_g000038 Rmu_sc0003374.1_g000002 Rmu_sc0003470.1_g000017 Rmu_sc0003669.1_g000013 Rmu_sc0003693.1_g000008 Rmu_sc0003749.1_g000015 Rmu_sc0003833.1_g000005 Rmu_sc0003936.1_g000036 Rmu_sc0004798.1_g000001 Rmu_sc0004932.1_g000024 Rmu_sc0005088.1_g000004 Rmu_sc0005439.1_g000003 Rmu_sc0005532.1_g000002 Rmu_sc0005728.1_g000009 Rmu_sc0005879.1_g000012 Rmu_sc0005914.1_g000010 Rmu_sc0006112.1_g000002 Rmu_sc0006196.1_g000003 Rmu_sc0006248.1_g000001 Rmu_sc0006366.1_g000015 Rmu_sc0006567.1_g000015 Rmu_sc0006695.1_g000070 Rmu_sc0006937.1_g000004 Rmu_sc0007647.1_g000009 Rmu_sc0008681.1_g000001 Rmu_sc0009833.1_g000019 Rmu_sc0010256.1_g000006 Rmu_sc0010366.1_g000001 Rmu_sc0010462.1_g000006 Rmu_sc0010817.1_g000017 Rmu_sc0014139.1_g000002 Rmu_sc0015191.1_g000001 Rmu_sc0015649.1_g000002 Rmu_sc0017650.1_g000005 Rmu_sc0028733.1_g000002 Rmu_ssc0000024.1_g000019 Rmu_ssc0000134.1_g000059 Rmu_ssc0000400.1_g000040 Rmu_ssc0000438.1_g000049
rosa_roxburghii Rroxscaffold_3G00231160 Rroxscaffold_5G00354700 Rroxscaffold_6G00395540
rosa_rugosa Rorug01G0149700.1 Rorug03G0299500 Rorug07G0249000
rosa_samantha Rh3BG164500 Rh3BG164800 Rh6BG099500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 135, 302
AccBSI CCGCTC 2 cut(s) 156, 210
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 4 cut(s) 154, 208, 326, 362
AclWI GGATC 3 cut(s) 193, 242, 255
AcsI RAATTY 2 cut(s) 45, 190
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 3 cut(s) 19, 76, 318
AfiI CCNNNNNNNGG 2 cut(s) 135, 302
AjnI CCWGG 2 cut(s) 134, 250
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 3 cut(s) 193, 242, 255
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 45, 190
AsuHPI GGTGA 2 cut(s) 197, 379
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 290
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 375
BbvI GCAGC 1 cut(s) 376
BccI CCATC 4 cut(s) 30, 36, 214, 352
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 136, 252
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 4 cut(s) 56, 68, 291, 415
BisI GCNGC 2 cut(s) 327, 390
BlsI GCNGC 2 cut(s) 328, 391
Bme1390I CCNGG 2 cut(s) 136, 252
BmiI GGNNCC 3 cut(s) 249, 257, 330
BmrFI CCNGG 2 cut(s) 136, 252
BmsI GCATC 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 135, 198, 251
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 302
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 399
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 2 cut(s) 136, 252
BseDI CCNNGG 3 cut(s) 135, 198, 251
BseGI GGATG 3 cut(s) 125, 316, 391
BseLI CCNNNNNNNGG 2 cut(s) 135, 302
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 2 cut(s) 263, 332
BslI CCNNNNNNNGG 2 cut(s) 135, 302
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 258, 290
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 185, 247
BspACI CCGC 4 cut(s) 154, 208, 326, 362
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 391
BspEI TCCGGA 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 249, 257, 330
BspPI GGATC 3 cut(s) 193, 242, 255
BspQI GCTCTTC 1 cut(s) 399
BsrBI CCGCTC 2 cut(s) 156, 210
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 135, 198, 251
BssMI GATC 2 cut(s) 185, 247
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 375
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 136, 252
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 165, 399
BstACI GRCGYC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 125, 316, 391
BstKTI GATC 2 cut(s) 188, 250
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 185, 247
BstMCI CGRYCG 1 cut(s) 81
BstNI CCWGG 2 cut(s) 136, 252
BstSCI CCNGG 2 cut(s) 134, 250
BstSLI GKGCMC 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 3 cut(s) 125, 316, 391
Cfr10I RCCGGY 1 cut(s) 262
CseI GACGC 1 cut(s) 255
Csp6I GTAC 3 cut(s) 18, 75, 317
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 2 cut(s) 148, 270
CviJI RGCY 4 cut(s) 86, 256, 329, 404
CviKI_1 RGCY 4 cut(s) 86, 256, 329, 404
CviQI GTAC 3 cut(s) 18, 75, 317
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 187, 249
DpnII GATC 2 cut(s) 185, 247
Eam1104I CTCTTC 2 cut(s) 165, 399
EarI CTCTTC 2 cut(s) 165, 399
Eco24I GRGCYC 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 134, 250
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 2 cut(s) 151, 273
FaiI YATR 3 cut(s) 149, 271, 354
FatI CATG 2 cut(s) 147, 269
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 327, 390
FokI GGATG 3 cut(s) 112, 323, 398
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 327, 390
FspBI CTAG 4 cut(s) 56, 68, 291, 415
GluI GCNGC 2 cut(s) 327, 390
HaeIII GGCC 1 cut(s) 86
HapII CCGG 2 cut(s) 263, 332
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 2 cut(s) 151, 273
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 263, 332
HphI GGTGA 2 cut(s) 197, 379
Hpy166II GTNNAC 3 cut(s) 75, 123, 205
Hpy188I TCNGA 2 cut(s) 35, 168
Hpy188III TCNNGA 3 cut(s) 213, 332, 398
Hpy8I GTNNAC 3 cut(s) 75, 123, 205
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 151, 273
Kpn2I TCCGGA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 185, 247
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 261, 334
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 376
MaeI CTAG 4 cut(s) 56, 68, 291, 415
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 187, 249
MbiI CCGCTC 2 cut(s) 156, 210
MboI GATC 2 cut(s) 185, 247
MboII GAAGA 2 cut(s) 152, 386
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 258, 290
MluCI AATT 2 cut(s) 45, 190
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 74
MroI TCCGGA 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 263, 332
MspR9I CCNGG 2 cut(s) 136, 252
MvaI CCWGG 2 cut(s) 136, 252
NdeII GATC 2 cut(s) 185, 247
NlaIII CATG 2 cut(s) 151, 273
NlaIV GGNNCC 3 cut(s) 249, 257, 330
PciSI GCTCTTC 1 cut(s) 399
PflMI CCANNNNNTGG 2 cut(s) 135, 302
PkrI GCNGC 2 cut(s) 328, 391
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 134, 250
PspGI CCWGG 2 cut(s) 134, 250
PspN4I GGNNCC 3 cut(s) 249, 257, 330
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 3 cut(s) 19, 76, 318
RsaNI GTAC 3 cut(s) 18, 75, 317
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 2 cut(s) 327, 390
Sau3AI GATC 2 cut(s) 185, 247
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 136, 252
SduI GDGCHC 2 cut(s) 258, 290
SetI ASST 4 cut(s) 23, 122, 137, 278
SfaNI GCATC 1 cut(s) 376
Sse9I AATT 2 cut(s) 45, 190
SsiI CCGC 4 cut(s) 154, 208, 326, 362
SspMI CTAG 4 cut(s) 56, 68, 291, 415
StyD4I CCNGG 2 cut(s) 134, 250
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 81, 188
TasI AATT 2 cut(s) 45, 190
TauI GCSGC 1 cut(s) 329
TseI GCWGC 1 cut(s) 389
Van91I CCANNNNNTGG 2 cut(s) 135, 302
XapI RAATTY 2 cut(s) 45, 190
XspI CTAG 4 cut(s) 56, 68, 291, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.