AT1G32600

F-box protein At3g16210

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11794802 .. 11795683
882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32600.1

Sequence Viewer

Length: 882 bp
ATGTCGAATAAACAATCATCTCAGCTCATTTCATTGCACAAAGATGGTTTATACCTTCTAGACCTTAATGAAACCACGTCTTTGAAGCTAAACGTGCCCTTTACATTACCGGCCCAAACTGAACCAGTCTGTATTCTTTCTTGCCGTGGAGTGATATGTCTCACCCGCAAAGACAACAATGAGTTAGCTATTTGGAAACCTACTTCAACAAAATTCAAGAGAGTACCGATGATTAAACGGGGTCAAACCCAAAATCTTTTGGGATTCGGTTATGACCGGGTTTTAGATGATTACAAAATTGTGACGATTATCGACAAGAAAACCTATATCTTTACGTTCAAAGAAAGTTCTTGGAGAGAAAGCAAACTAATTCCCTCTAGTGATTGCTTCTTCAAAGAGAGGACCGGTACGGTTGTCGACAATTGTATGTATTGGATAGCAAACCGGTTCAACAAAGAAAAATTCATCTTATGCTTTGATTTCGTTAATGAAGAGTACTCAAAACTAAACGTTCCGATGATGCTATCAGGATTGGAGTTCAATTCATGGTTAGATGTTTCAAGGGGAGAACTATGTGTTATCAATCACTACCCAAGTGTAGATGACAATTTATGTGTATGTCGACGAGAAATTAGAAGCGGCAAGAAGATTGCGAGATGGGATAGCGACCCGTGGATGAATGTAGCGGGAAACGATGACGAACCCGTTGATATTAGGTTTGTATGCATAGCAAAAAACGATGAAGTCTTTGTAGTGGTGCGATGTCGTAGTAAAGAAGAAGAGGACAATGTTTTTGTGTACAATAAGGAACAAAACGAGTTCATTGAAGTTTTATTTTCTAGTCATTTGAAAGTGTTGGGATGTATGACTAAACTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

293

Amino Acids

34.08

Weight (kDa)

6.82

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 25 - 276 7.7e-19 F-box associated beta propeller domain
FBA_3 PF08268 32 - 277 3.6e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 417, 622
AciI CCGC 3 cut(s) 166, 639, 686
AclI AACGTT 1 cut(s) 510
AcsI RAATTY 2 cut(s) 212, 461
AfaI GTAC 4 cut(s) 225, 409, 497, 800
AgeI ACCGGT 2 cut(s) 404, 444
AjiI CACGTC 1 cut(s) 78
AluBI AGCT 3 cut(s) 25, 88, 188
AluI AGCT 3 cut(s) 25, 88, 188
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 212, 461
ArsI GACNNNNNNTTYG 2 cut(s) 776, 808
AsiGI ACCGGT 2 cut(s) 404, 444
AspS9I GGNCC 2 cut(s) 112, 402
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BccI CCATC 2 cut(s) 38, 651
BceAI ACGGC 1 cut(s) 129
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 3 cut(s) 59, 378, 840
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 112, 402
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 145, 671
BsaWI WCCGGW 2 cut(s) 404, 444
Bse118I RCCGGY 3 cut(s) 109, 404, 444
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 145, 671
BseGI GGATG 2 cut(s) 681, 866
BseMI GCAATG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 99
BshFI GGCC 1 cut(s) 113
BshTI ACCGGT 2 cut(s) 404, 444
BsiSI CCGG 4 cut(s) 110, 277, 405, 445
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1407I TGTACA 1 cut(s) 798
BspACI CCGC 3 cut(s) 166, 639, 686
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 32
BsrFI RCCGGY 3 cut(s) 109, 404, 444
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 3 cut(s) 109, 404, 444
BssECI CCNNGG 2 cut(s) 145, 671
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 486, 774
BstAUI TGTACA 1 cut(s) 798
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 2 cut(s) 145, 671
BstF5I GGATG 2 cut(s) 681, 866
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 145, 671
BtgZI GCGATG 1 cut(s) 775
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 681, 866
Cfr10I RCCGGY 3 cut(s) 109, 404, 444
Cfr13I GGNCC 2 cut(s) 112, 402
Csp6I GTAC 4 cut(s) 224, 408, 496, 799
CspAI ACCGGT 2 cut(s) 404, 444
CviAII CATG 1 cut(s) 546
CviJI RGCY 4 cut(s) 25, 88, 113, 188
CviKI_1 RGCY 4 cut(s) 25, 88, 113, 188
CviQI GTAC 4 cut(s) 224, 408, 496, 799
DdeI CTNAG 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 486, 774
EarI CTCTTC 2 cut(s) 486, 774
Eco47I GGWCC 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 728
FaeI CATG 1 cut(s) 549
FatI CATG 1 cut(s) 545
FauI CCCGC 2 cut(s) 173, 679
FblI GTMKAC 2 cut(s) 417, 622
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 2 cut(s) 688, 873
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 3 cut(s) 59, 378, 840
GluI GCNGC 1 cut(s) 640
HaeIII GGCC 1 cut(s) 113
HapII CCGG 4 cut(s) 110, 277, 405, 445
Hin1II CATG 1 cut(s) 549
HincII GTYRAC 2 cut(s) 418, 623
HindII GTYRAC 2 cut(s) 418, 623
HinfI GANTC 1 cut(s) 264
HpaII CCGG 4 cut(s) 110, 277, 405, 445
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 3 cut(s) 418, 623, 799
Hpy188I TCNGA 1 cut(s) 516
Hpy188III TCNNGA 3 cut(s) 59, 217, 528
Hpy8I GTNNAC 3 cut(s) 418, 623, 799
Hpy99I CGWCG 1 cut(s) 627
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 4 cut(s) 77, 93, 335, 510
HpyCH4V TGCA 2 cut(s) 37, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 4 cut(s) 77, 93, 335, 510
Hsp92II CATG 1 cut(s) 549
LpnPI CCDG 6 cut(s) 123, 138, 290, 418, 458, 513
LweI GCATC 1 cut(s) 510
MaeI CTAG 3 cut(s) 59, 378, 840
MaeII ACGT 4 cut(s) 77, 93, 335, 510
MaeIII GTNAC 1 cut(s) 301
MboII GAAGA 5 cut(s) 382, 503, 658, 788, 791
MfeI CAATTG 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 8 cut(s) 212, 297, 369, 421, 461, 541, 607, 630
MnlI CCTC 3 cut(s) 385, 393, 775
Mph1103I ATGCAT 1 cut(s) 728
MseI TTAA 3 cut(s) 66, 234, 486
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 4 cut(s) 110, 277, 405, 445
MspR9I CCNGG 1 cut(s) 278
MunI CAATTG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 278
NlaIII CATG 1 cut(s) 549
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 728
PfeI GAWTC 1 cut(s) 264
PinAI ACCGGT 2 cut(s) 404, 444
PkrI GCNGC 1 cut(s) 641
Psp1406I AACGTT 1 cut(s) 510
PspPI GGNCC 2 cut(s) 112, 402
RsaI GTAC 4 cut(s) 225, 409, 497, 800
RsaNI GTAC 4 cut(s) 224, 408, 496, 799
RseI CAYNNNNRTG 1 cut(s) 42
SalI GTCGAC 2 cut(s) 416, 621
SaqAI TTAA 3 cut(s) 66, 234, 486
SatI GCNGC 1 cut(s) 640
Sau96I GGNCC 2 cut(s) 112, 402
ScaI AGTACT 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 1 cut(s) 510
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 8 cut(s) 212, 297, 369, 421, 461, 541, 607, 630
SsiI CCGC 3 cut(s) 166, 639, 686
SspMI CTAG 3 cut(s) 59, 378, 840
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 4 cut(s) 80, 96, 338, 513
TaqI TCGA 4 cut(s) 5, 312, 417, 622
TasI AATT 8 cut(s) 212, 297, 369, 421, 461, 541, 607, 630
TatI WGTACW 2 cut(s) 495, 798
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 66, 234, 486
Tru9I TTAA 3 cut(s) 66, 234, 486
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 8 cut(s) 21, 84, 454, 504, 534, 692, 756, 811
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 2 cut(s) 212, 461
XbaI TCTAGA 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 417, 622
XspI CTAG 3 cut(s) 59, 378, 840
ZrmI AGTACT 1 cut(s) 497
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.