FvH4_2g26300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000424
Physical Location & Seq
Forward (+)
21158754 .. 21159714
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26300.t1

Sequence Viewer

Length: 825 bp
ATGAAGGCCAACAGTCCTCGCACCATTCTATTTCAACGCCCTAGTAAAGAATTCTCTTTATCTGTTAATTTTGACGGAGAGGGATTTGATAATGCTGTGCCGCCTTTGAGGATAAGGCAACCGCCGCAACCACAGGCCTCCATGTTCGGTTACTGTAACGGTTTGGTTTGTATTAAGTACCGTAACTCATTATCGGAGGCTCAGAGTTTTCTAGTATGGAATCCCTCGATTCATAGGTTTAAGGGGATTCCCTTCACAGCTATCGAGCTGCCTGCTGACACTAAAAAATGGCCTGCATGGTACGGATTTGGGTACGATTCAACCAATGACGACTATAAGCTAGTGAGAGTGGTAGTGTTTACAAAAAATGATGATGAAATGGGTTCAGAAATCGCAACTGAGAAGTATGATGAGTTTCCAGCCCCGCCGGTAAAGTACGAGTATCCTAAATTATGGACGTTGGAGGTCTTGGATGGATATCTATGTGTTTATCCTAGACCTCACTCACCTGCAAAGTACATCGACCGAAGTGATGCTTGGATTATGAAGAAGGAATATGGAGGGGGAGGGACATCATCTTGGACTCGGTTGTATACTATTGACATGTATGATGTACCTCGGGGGCATCGGTATTGCAAACCTTTGTTGTTTTCAAGGACGCGAGAAATGGTTCTTTTGCAAGTAGGAGGCGCGTTGTTCCGGTATGATTTAGAGAAAAAGATACTCGAAGAAGTTGACATTTTTGGTAAGCCCTCCGGGTTTTCGACTGCTATTTCTCTGGGAAACCTTCATCTCCTTGATGGTGATCCTGTAATCCCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

275

Amino Acids

31.3

Weight (kDa)

6.9

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 16 - 121 1.1e-06 F-box associated beta propeller domain
FBA_1 PF07734 37 - 126 5.8e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 593
AccII CGCG 2 cut(s) 661, 692
AciI CCGC 4 cut(s) 101, 122, 125, 425
AclWI GGATC 1 cut(s) 800
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 6 cut(s) 179, 302, 314, 437, 518, 615
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 3 cut(s) 35, 321, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 3 cut(s) 260, 268, 340
AluI AGCT 3 cut(s) 260, 268, 340
AlwI GGATC 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 618
AoxI GGCC 3 cut(s) 6, 135, 290
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 1 cut(s) 692
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 498, 815
AvaI CYCGRG 1 cut(s) 618
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 467, 794
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 757
BfaI CTAG 4 cut(s) 42, 212, 341, 495
BfuAI ACCTGC 1 cut(s) 517
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 3 cut(s) 101, 125, 269
BlsI GCNGC 3 cut(s) 102, 126, 270
Bme1390I CCNGG 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 618
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 2 cut(s) 523, 634
BpuMI CCSGG 1 cut(s) 757
BsaBI GATNNNNATC 2 cut(s) 477, 804
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 699
Bse118I RCCGGY 1 cut(s) 427
Bse8I GATNNNNATC 2 cut(s) 477, 804
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 1 cut(s) 478
BseJI GATNNNNATC 2 cut(s) 477, 804
BseMII CTCAG 2 cut(s) 215, 390
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 661, 692
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 3 cut(s) 8, 137, 292
BsiEI CGRYCG 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 618
BsiSI CCGG 3 cut(s) 428, 700, 756
BslFI GGGAC 1 cut(s) 583
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 3 cut(s) 8, 137, 292
BsoBI CYCGRG 1 cut(s) 618
Bsp143I GATC 1 cut(s) 805
BspACI CCGC 4 cut(s) 101, 122, 125, 425
BspANI GGCC 3 cut(s) 8, 137, 292
BspCNI CTCAG 2 cut(s) 214, 391
BspFNI CGCG 2 cut(s) 661, 692
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 427
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 1 cut(s) 805
BssNAI GTATAC 1 cut(s) 594
Bst1107I GTATAC 1 cut(s) 594
Bst4CI ACNGT 4 cut(s) 14, 155, 161, 182
BstC8I GCNNGC 2 cut(s) 273, 294
BstDEI CTNAG 3 cut(s) 201, 399, 822
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 2 cut(s) 661, 692
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 1 cut(s) 808
BstMBI GATC 1 cut(s) 805
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 755
BstUI CGCG 2 cut(s) 661, 692
BstV1I GCAGC 1 cut(s) 255
BstZ17I GTATAC 1 cut(s) 594
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 3 cut(s) 8, 137, 292
BtsCI GGATG 1 cut(s) 478
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 273, 294
CfoI GCGC 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 427
CseI GACGC 1 cut(s) 667
Csp6I GTAC 6 cut(s) 178, 301, 313, 436, 517, 614
CviAII CATG 3 cut(s) 142, 297, 604
CviJI RGCY 9 cut(s) 8, 137, 200, 260, 268, 292, 340, 422, 751
CviKI_1 RGCY 9 cut(s) 8, 137, 200, 260, 268, 292, 340, 422, 751
CviQI GTAC 6 cut(s) 178, 301, 313, 436, 517, 614
DdeI CTNAG 3 cut(s) 201, 399, 822
DpnI GATC 1 cut(s) 807
DpnII GATC 1 cut(s) 805
Eco147I AGGCCT 1 cut(s) 137
Eco32I GATATC 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 50
EcoRV GATATC 1 cut(s) 479
FaeI CATG 3 cut(s) 145, 300, 607
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 1 cut(s) 583
FatI CATG 3 cut(s) 141, 296, 603
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 3 cut(s) 101, 125, 269
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 101, 125, 269
FspBI CTAG 4 cut(s) 42, 212, 341, 495
GlaI GCGC 1 cut(s) 691
GluI GCNGC 3 cut(s) 101, 125, 269
HaeIII GGCC 3 cut(s) 8, 137, 292
HapII CCGG 3 cut(s) 428, 700, 756
HgaI GACGC 1 cut(s) 667
HhaI GCGC 1 cut(s) 692
Hin1II CATG 3 cut(s) 145, 300, 607
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 5 cut(s) 220, 229, 247, 317, 583
HpaII CCGG 3 cut(s) 428, 700, 756
HphI GGTGA 2 cut(s) 498, 815
Hpy166II GTNNAC 3 cut(s) 360, 594, 736
Hpy188I TCNGA 3 cut(s) 196, 204, 388
Hpy8I GTNNAC 3 cut(s) 360, 594, 736
HpyAV CCTTC 3 cut(s) 262, 544, 797
HpyCH4III ACNGT 4 cut(s) 14, 155, 161, 182
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 296, 512, 636, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 3 cut(s) 201, 399, 822
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 3 cut(s) 145, 300, 607
HspAI GCGC 1 cut(s) 690
Kzo9I GATC 1 cut(s) 805
LpnPI CCDG 9 cut(s) 119, 285, 306, 432, 441, 522, 713, 764, 769
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 2 cut(s) 523, 634
MaeI CTAG 4 cut(s) 42, 212, 341, 495
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 3 cut(s) 149, 155, 182
MalI GATC 1 cut(s) 807
MboI GATC 1 cut(s) 805
MboII GAAGA 2 cut(s) 559, 740
MluCI AATT 3 cut(s) 50, 67, 449
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 3 cut(s) 66, 174, 240
MspI CCGG 3 cut(s) 428, 700, 756
MspR9I CCNGG 1 cut(s) 757
MvnI CGCG 2 cut(s) 661, 692
MwoI GCNNNNNNNGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 757
NdeII GATC 1 cut(s) 805
NlaIII CATG 3 cut(s) 145, 300, 607
NspI RCATGY 1 cut(s) 607
PaqCI CACCTGC 1 cut(s) 517
PceI AGGCCT 1 cut(s) 137
PciI ACATGT 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 4 cut(s) 220, 229, 247, 317
PkrI GCNGC 3 cut(s) 102, 126, 270
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PscI ACATGT 1 cut(s) 603
RsaI GTAC 6 cut(s) 179, 302, 314, 437, 518, 615
RsaNI GTAC 6 cut(s) 178, 301, 313, 436, 517, 614
SaqAI TTAA 3 cut(s) 66, 174, 240
SatI GCNGC 3 cut(s) 101, 125, 269
Sau3AI GATC 1 cut(s) 805
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 757
SfaNI GCATC 2 cut(s) 523, 634
Sse9I AATT 3 cut(s) 50, 67, 449
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 4 cut(s) 101, 122, 125, 425
SspMI CTAG 4 cut(s) 42, 212, 341, 495
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 755
TaaI ACNGT 4 cut(s) 14, 155, 161, 182
TaiI ACGT 1 cut(s) 461
TaqI TCGA 5 cut(s) 227, 264, 522, 726, 764
TaqII GACCGA 1 cut(s) 540
TasI AATT 3 cut(s) 50, 67, 449
TatI WGTACW 1 cut(s) 516
TauI GCSGC 2 cut(s) 103, 127
TfiI GAWTC 4 cut(s) 220, 229, 247, 317
Tru1I TTAA 3 cut(s) 66, 174, 240
Tru9I TTAA 3 cut(s) 66, 174, 240
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 5 cut(s) 17, 221, 390, 560, 779
TspGWI ACGGA 2 cut(s) 90, 318
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 4 cut(s) 42, 212, 341, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.