Rroxscaffold_7G00172900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000424
Physical Location & Seq
Reverse (-)
13024256 .. 13024634
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172900.1

Sequence Viewer

Length: 336 bp
ATGGCTCCTGTTCCTACACCTTTAACGATTCGCAGCTTGCCATCCGGGATTGTGGAAGACATTCTTTTACGGCTCTCGCCCAAAGAATTGATTAGATGTCCTTCTACAAGGCTCACCTCAAGAGGTCTTAGGAAATCAAAAGTTACGAACGCTTGTAACGGCGAAGGCAAAGACAAACCCGAGCAAGAAGCGACATATTTCTTTCAATGTGCCTTTTATGGGAGAGACACATTCAGCAACGCTCTCAAGATTGCACAACCTTTAAGACATCCTAGGCGAGAGACAGAGATAGTGGGATACTATGATGGGTTGGTTTGCATACGGAACATATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

111

Amino Acids

12.56

Weight (kDa)

9.38

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 219, 275
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 60
AspA2I CCTAGG 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 179
AvrII CCTAGG 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 49, 299
BceAI ACGGC 2 cut(s) 86, 175
BciVI GTATCC 1 cut(s) 290
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 219, 275
BfaI CTAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 1 cut(s) 34
BlnI CCTAGG 1 cut(s) 272
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 103, 230
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 41, 268
BseLI CCNNNNNNNGG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 219, 275
BsoBI CYCGRG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 41, 268
BstMAI GTCTC 2 cut(s) 219, 275
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 63
BsuI GTATCC 1 cut(s) 290
BtsCI GGATG 2 cut(s) 41, 268
Cac8I GCNNGC 1 cut(s) 38
CviJI RGCY 4 cut(s) 5, 36, 73, 112
CviKI_1 RGCY 4 cut(s) 5, 36, 73, 112
DdeI CTNAG 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaiI YATR 6 cut(s) 196, 219, 303, 320, 329, 331
FalI AAGNNNNNCTT 2 cut(s) 48, 80
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 28, 255
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 34
HapII CCGG 1 cut(s) 45
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 120, 247
HpyAV CCTTC 2 cut(s) 111, 158
HpyCH4V TGCA 2 cut(s) 254, 318
HpyF3I CTNAG 1 cut(s) 128
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 21, 58
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 142, 155
MboII GAAGA 1 cut(s) 68
MluCI AATT 1 cut(s) 86
MnlI CCTC 2 cut(s) 116, 127
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 2 cut(s) 23, 263
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 44
PkrI GCNGC 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 23, 263
SatI GCNGC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 46
SetI ASST 5 cut(s) 22, 38, 119, 127, 262
SmlI CTYRAG 2 cut(s) 118, 245
SmoI CTYRAG 2 cut(s) 118, 245
Sse9I AATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 272
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 2 cut(s) 23, 263
Tru9I TTAA 2 cut(s) 23, 263
TseI GCWGC 1 cut(s) 33
XmaJI CCTAGG 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.