Prupe.1G024400_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Forward (+)
1695091 .. 1696269
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G024400.1

Sequence Viewer

Length: 999 bp
ATGTCTACCCTGCCACCGGAGCTAATCTTGGACATCCTTTTACGGCTTCCGCCCAAGGATTTGATACGATCCCTGTGCGTTTCAAAAGCTTGCGACAACAATACCAGCGGTACAGCCGTGAAAGCTGAGAAGCCGTTCAAATTCCCTGACGCCTACGATGTCTTGAGGTTATCCGGCCATTCTGTTCATGGTCTGTTTTGCATTCACAGCAAGGACGGGAGGTATATTGCTTTGTGGAACCCGTCAATTCAGAAGTTGAAGAAGATTCCCTTGCCCACCTTTGGGCCATCATATTCAGAGTGGTTTTCGAAGAGAAAAAGAAATCACCTCTATGGATTAGGGTATGATTCAGTTAATGATGACTATAAACTTGTGGGAATGGTGGTGGACGATCGGAGTGTTCAAGTTCAAATTTACAGCCTAAAATCCAACTCATGGAAAAGGATCCAAAACGGGCCTCTTTTTAGTAATATTTCTTTGGGTCGCCCTCGCATTATGTTCTGCAACGGTGCTATGAGTTGGCTGATTGTTAACAACGAGGTCGATGGAAATCGGTACATAATTCAAACCCTTAATCTTGCCACAATTATACGTACCGTTAGTTTGGAGGTCTTAGGGGGCTGTTTATGTCTATGTGTTTATGTCCCGACCGGACATGCTGTTTGGATTATGAAGGAATATGGAGTGACAGAATCTTGGACCCTGCTTTATTGTTTGGAGAATGAAGCTGTGCCTTCGGGTGTGGGTTATTTCTCCAAACCTTTGGTGTTGTCAAAGAATGGTGAAATGGTTTTGACACATAACGGAAGAGGCTTTTTTTGGTATGATTTAAGGAACAAGAGTTTCAAACAAGTTCAATTTAGTCGTCCTCCGTCAACTCAACTTGACATAACTTTTTATGTCGGGAGTCTTTGTCTTCTTGATGGTGATCCTGTTATTGCTGAGAGGGGCACCAGCCGATGGGATCTAATGTTAAGTAAAATTGATTTGGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

333

Amino Acids

37.46

Weight (kDa)

8.95

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 2 cut(s) 435, 960
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 50, 108
AclWI GGATC 5 cut(s) 63, 439, 452, 923, 972
AcoI YGGCCR 2 cut(s) 175, 990
AcsI RAATTY 2 cut(s) 140, 411
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 3 cut(s) 112, 557, 595
AfiI CCNNNNNNNGG 5 cut(s) 16, 281, 282, 435, 960
AgsI TTSAA 8 cut(s) 84, 139, 259, 404, 410, 566, 847, 857
AluBI AGCT 4 cut(s) 22, 89, 125, 728
AluI AGCT 4 cut(s) 22, 89, 125, 728
AlwI GGATC 5 cut(s) 63, 439, 452, 923, 972
AoxI GGCC 4 cut(s) 175, 284, 455, 990
ApoI RAATTY 2 cut(s) 140, 411
ArsI GACNNNNNNTTYG 2 cut(s) 645, 677
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 3 cut(s) 284, 455, 699
AsuHPI GGTGA 3 cut(s) 317, 794, 938
AsuII TTCGAA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 699
BaeGI GKGCMC 1 cut(s) 953
BaeI ACNNNNGTAYC 2 cut(s) 102, 135
BalI TGGCCA 1 cut(s) 992
BamHI GGATCC 1 cut(s) 444
BanI GGYRCC 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 908
BccI CCATC 4 cut(s) 295, 539, 917, 954
BceAI ACGGC 3 cut(s) 59, 101, 118
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
Bme18I GGWCC 1 cut(s) 699
BmgT120I GGNCC 3 cut(s) 284, 455, 699
BmiI GGNNCC 4 cut(s) 239, 446, 701, 952
BpiI GAAGAC 1 cut(s) 908
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 593
BsaBI GATNNNNATC 2 cut(s) 549, 927
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 2 cut(s) 16, 650
BsaXI ACNNNNNCTCC 2 cut(s) 898, 928
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 281, 282, 435, 960
Bse8I GATNNNNATC 2 cut(s) 549, 927
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 2 cut(s) 549, 927
BseLI CCNNNNNNNGG 5 cut(s) 16, 281, 282, 435, 960
BseMII CTCAG 2 cut(s) 117, 933
BseSI GKGCMC 1 cut(s) 953
Bsh1285I CGRYCG 2 cut(s) 394, 651
BshFI GGCC 4 cut(s) 177, 286, 457, 992
BshNI GGYRCC 1 cut(s) 950
BsiEI CGRYCG 2 cut(s) 394, 651
BsiSI CCGG 3 cut(s) 17, 174, 651
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 5 cut(s) 16, 281, 282, 435, 960
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 4 cut(s) 177, 286, 457, 992
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 953
Bsp143I GATC 5 cut(s) 68, 391, 444, 928, 964
BspACI CCGC 2 cut(s) 50, 108
BspANI GGCC 4 cut(s) 177, 286, 457, 992
BspCNI CTCAG 2 cut(s) 118, 934
BspLI GGNNCC 4 cut(s) 239, 446, 701, 952
BspPI GGATC 5 cut(s) 63, 439, 452, 923, 972
BspT104I TTCGAA 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 950
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 5 cut(s) 68, 391, 444, 928, 964
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 509, 598
Bst6I CTCTTC 2 cut(s) 305, 802
BstACI GRCGYC 1 cut(s) 150
BstBAI YACGTR 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 126, 613, 942
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 5 cut(s) 71, 394, 447, 931, 967
BstMBI GATC 5 cut(s) 68, 391, 444, 928, 964
BstMCI CGRYCG 2 cut(s) 394, 651
BstMWI GCNNNNNNNGC 3 cut(s) 19, 122, 207
BstNSI RCATGY 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 953
BstSNI TACGTA 1 cut(s) 593
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 2 cut(s) 444, 964
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 2 cut(s) 444, 964
BsuRI GGCC 4 cut(s) 177, 286, 457, 992
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 284, 455, 699
CseI GACGC 1 cut(s) 158
Csp6I GTAC 3 cut(s) 111, 556, 594
CviAII CATG 3 cut(s) 188, 435, 656
CviQI GTAC 3 cut(s) 111, 556, 594
DdeI CTNAG 3 cut(s) 126, 613, 942
DpnI GATC 5 cut(s) 70, 393, 446, 930, 966
DpnII GATC 5 cut(s) 68, 391, 444, 928, 964
EaeI YGGCCR 2 cut(s) 175, 990
Eam1104I CTCTTC 2 cut(s) 305, 802
EarI CTCTTC 2 cut(s) 305, 802
EciI GGCGGA 1 cut(s) 39
Eco105I TACGTA 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 191, 438, 659
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 629
FatI CATG 3 cut(s) 187, 434, 655
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 20
HaeIII GGCC 4 cut(s) 177, 286, 457, 992
HapII CCGG 3 cut(s) 17, 174, 651
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 191, 438, 659
HincII GTYRAC 2 cut(s) 532, 876
HindII GTYRAC 2 cut(s) 532, 876
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 265, 347, 692, 907
HpaI GTTAAC 1 cut(s) 532
HpaII CCGG 3 cut(s) 17, 174, 651
HphI GGTGA 3 cut(s) 317, 794, 938
Hpy166II GTNNAC 4 cut(s) 6, 388, 532, 876
Hpy188I TCNGA 3 cut(s) 252, 298, 396
Hpy188III TCNNGA 4 cut(s) 163, 646, 904, 920
Hpy8I GTNNAC 4 cut(s) 6, 388, 532, 876
HpyAV CCTTC 2 cut(s) 667, 744
HpyCH4III ACNGT 2 cut(s) 509, 598
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 201, 504
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 122, 207
HpyF3I CTNAG 3 cut(s) 126, 613, 942
HpySE526I ACGT 1 cut(s) 592
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 191, 438, 659
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 5 cut(s) 68, 391, 444, 928, 964
LmnI GCTCC 1 cut(s) 19
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 1 cut(s) 685
MalI GATC 5 cut(s) 70, 393, 446, 930, 966
MboI GATC 5 cut(s) 68, 391, 444, 928, 964
MboII GAAGA 5 cut(s) 271, 274, 322, 819, 908
MflI RGATCY 2 cut(s) 444, 964
MhlI GDGCHC 1 cut(s) 953
MlsI TGGCCA 1 cut(s) 992
MluCI AATT 7 cut(s) 140, 246, 411, 561, 585, 857, 981
MluNI TGGCCA 1 cut(s) 992
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 1 cut(s) 453
Mox20I TGGCCA 1 cut(s) 992
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 992
MseI TTAA 5 cut(s) 354, 531, 573, 830, 974
MslI CAYNNNNRTG 1 cut(s) 330
Msp20I TGGCCA 1 cut(s) 992
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 3 cut(s) 17, 174, 651
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 19, 122, 207
NdeII GATC 5 cut(s) 68, 391, 444, 928, 964
NlaIII CATG 3 cut(s) 191, 438, 659
NlaIV GGNNCC 4 cut(s) 239, 446, 701, 952
NmuCI GTSAC 1 cut(s) 685
NspI RCATGY 1 cut(s) 659
NspV TTCGAA 1 cut(s) 308
PctI GAATGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 265, 347, 692
PflMI CCANNNNNTGG 2 cut(s) 435, 960
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
Ppu21I YACGTR 1 cut(s) 593
PspN4I GGNNCC 4 cut(s) 239, 446, 701, 952
PspPI GGNCC 3 cut(s) 284, 455, 699
PsuI RGATCY 2 cut(s) 444, 964
PvuI CGATCG 1 cut(s) 394
RsaI GTAC 3 cut(s) 112, 557, 595
RsaNI GTAC 3 cut(s) 111, 556, 594
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 5 cut(s) 354, 531, 573, 830, 974
Sau3AI GATC 5 cut(s) 68, 391, 444, 928, 964
Sau96I GGNCC 3 cut(s) 284, 455, 699
SchI GAGTC 1 cut(s) 916
SduI GDGCHC 1 cut(s) 953
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SnaBI TACGTA 1 cut(s) 593
Sse9I AATT 7 cut(s) 140, 246, 411, 561, 585, 857, 981
SsiI CCGC 2 cut(s) 50, 108
SspI AATATT 1 cut(s) 472
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 509, 598
TaiI ACGT 1 cut(s) 595
TaqI TCGA 2 cut(s) 308, 543
TasI AATT 7 cut(s) 140, 246, 411, 561, 585, 857, 981
TfiI GAWTC 3 cut(s) 265, 347, 692
Tru1I TTAA 5 cut(s) 354, 531, 573, 830, 974
Tru9I TTAA 5 cut(s) 354, 531, 573, 830, 974
TseFI GTSAC 1 cut(s) 685
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 3 cut(s) 176, 686, 738
TspGWI ACGGA 2 cut(s) 819, 861
Van91I CCANNNNNTGG 2 cut(s) 435, 960
VpaK11BI GGWCC 1 cut(s) 699
XapI RAATTY 2 cut(s) 140, 411
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.