Rh7AG031000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000424
Physical Location & Seq
Reverse (-)
2133286 .. 2134259
974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG031000.1

Sequence Viewer

Length: 300 bp
ATGGTCCAAGACTTGCCTGCTCATCTTAATAAGGATTATATATTTGCCTCAAATGGGGTTTGTCTGGATAGTTCTTTACATTGGTTGATGAGGTTAGGTGACAAAGGTGGAGGACCAATGATAGTTCTAACCTTTGATCTCGCAAGTGAAGAGTACCACTGGTTTTCTGCCCCAGATCATTATAACAATATTGTTGCAATTTATACTAGACAAACTGAGCAGAAGCCAAAGTCCCAGAGAAGAGACTTGGAAGACTCGGTTCTTACATGGGTGACTTATCCAGCACGCATCATTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

99

Amino Acids

11.45

Weight (kDa)

6.02

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 4, 113
AsuHPI GGTGA 2 cut(s) 110, 283
AvaII GGWCC 2 cut(s) 4, 113
BbsI GAAGAC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 4, 113
BmgT120I GGNCC 2 cut(s) 4, 113
BpiI GAAGAC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 136, 175
BspCNI CTCAG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 164
BssMI GATC 2 cut(s) 136, 175
Bst6I CTCTTC 2 cut(s) 144, 235
BstC8I GCNNGC 2 cut(s) 18, 286
BstDEI CTNAG 1 cut(s) 216
BstKTI GATC 2 cut(s) 139, 178
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 136, 175
BstV2I GAAGAC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 18, 286
Cfr13I GGNCC 2 cut(s) 4, 113
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 267
CviJI RGCY 1 cut(s) 226
CviKI_1 RGCY 1 cut(s) 226
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 138, 177
DpnII GATC 2 cut(s) 136, 175
Eam1104I CTCTTC 2 cut(s) 144, 235
EarI CTCTTC 2 cut(s) 144, 235
Eco47I GGWCC 2 cut(s) 4, 113
FaeI CATG 1 cut(s) 270
FaiI YATR 5 cut(s) 39, 41, 183, 204, 268
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 266
FspBI CTAG 1 cut(s) 207
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 254
HphI GGTGA 2 cut(s) 110, 283
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 2 cut(s) 136, 175
LpnPI CCDG 6 cut(s) 30, 50, 145, 186, 248, 294
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 98, 271
MalI GATC 2 cut(s) 138, 177
MboI GATC 2 cut(s) 136, 175
MboII GAAGA 3 cut(s) 161, 252, 263
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 3 cut(s) 58, 84, 104
MseI TTAA 1 cut(s) 27
NdeII GATC 2 cut(s) 136, 175
NlaIII CATG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 98, 271
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PsiI TTATAA 1 cut(s) 183
PspPI GGNCC 2 cut(s) 4, 113
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 2 cut(s) 136, 175
Sau96I GGNCC 2 cut(s) 4, 113
SchI GAGTC 1 cut(s) 248
SetI ASST 5 cut(s) 95, 100, 109, 134, 299
SinI GGWCC 2 cut(s) 4, 113
Sse9I AATT 1 cut(s) 198
SspI AATATT 1 cut(s) 190
SspMI CTAG 1 cut(s) 207
TasI AATT 1 cut(s) 198
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 2 cut(s) 98, 271
Tsp45I GTSAC 2 cut(s) 98, 271
TspRI CASTG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 4, 113
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.