Rh7DG030400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000424
Physical Location & Seq
Reverse (-)
2253180 .. 2255609
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG030400.1

Sequence Viewer

Length: 2430 bp
ATGGAAGGGAAACCTAAATCTGTTTTTATGGTGGCGCATTCTGATGACGGCTCATATAGTGCCCTATATGAAGTGAAAATCCAACCTGGAGGAGAAGTTATAGGCGTCGTAGGCGGAGGAGGAAGATTAGCAGCAACTCATAAAAAACGCCGCCAGCTACTTGAGCCGGTGGTCAAGTTGTTTGATGACAAAGGTATAGTGGTACCGGAGCATTCAAACTTGGCAACTGCAAGGTTCTTCAGCCGCTCCAAGTTATACCTATGGCTAAACGAAAGCAATTCTAAAATGCATAACAAAGAGACCACTACCAACTCAACATCCGCACTCTGCTATGGATATGTTTTGGACACGGAGGCGAAGTCATTGGTCCCATTCAAGTCACCTCAAGCACATAAGCCATCAGCAACTGTTATTTCCGCCTTTGGTAAGCTTTATCTTCTTGCGAATCCAGAATGCTGGCCGGAGATCCCAACCCCGGCCTTTGAGCGATATGATCCTGCTACTAATTGTTGGGAATCCCTCCCTCCTTTTCCAGGTTATAATCACCGGAAAGAGATTAGAATAATAGGTTATGCCGTCTGTTCCAGTTTTATTCTGTTCACAGCAGACCACCATAAGGAATACGTGGCATTCAATGTGACCAGAAAACAATGGGCTTTTGATGTGACCAGAAAACAATGGCATAAAGTCAAAGTGTGGCCGCCTACTCAATATCGTTTAACGAATGGTTCAGTCGGCCGGGGGAGGGCCGTGGTTTTAGGTGATACTATCTATACCTTTAACTATTCATGTAGTAGTGTAGTGGCATTCAACTTTTGGTGGGATTTAGATGAGGATGGTGATGTTACTTTCTATGTAAGCCCAGAATCCGTTTTGAAAGGCTTGGAGATTAGGTTGGGGACAAAAGGAAAGAAAGAAGGGTATTTGGTTCATTTGGGGAACTTGGATTTTTGTCTTGTCCAAAATTTCTTCCAACGTAGTAGAACTGGTCGTCAAGAATTTTGCATCACCAGGTTTCAGGTTGTGGTCGAAGGAGGAGGAAGGCATATCAAGACCTTACATTCAACTATTTGTGAAGTGGACACCCCCGACTCTAATTTCATTTGTTTAAGTTACTGCTTGACTGCCGATGTTGATGATATTGAACCCAAAGAAGAAGAGAGAGTGATCACTACTAGGTCCATGCAACAGGAAGAACAAGGTGTTGTTTCAACAAATGAATTAGAAGAAACAAAGCAATGCAGCCTTTTCGGCACATCAGACATCCCACAAGAGTTGATCTTTGATATCCTTGCAAGGCTGTCAACCAAAGATTTGATTAGACTCACGTGCGTTTCTAAAGCATGGAATGCTGCCATCCAAGACCCACAATTGGCCAAACTGCATCTCCATCTCTCCATCAAGATCATCAACTCTTTGGATCCCACCTTTTATATTCTTTCATCTGCACATCTATCAGATCATGACTTTTATCCAGTGGCCTTGTTCAACAATAACACAAAGGGTAGAGTTGTGAAAGTTAAGCATCGATCAAAACAGGTTCAGCAAAGAGCAAACATCTTAGGTTACTGTAATGGTTTGCTTTGCATTTCTGGATGGTCTAGGGATGTCAATGAATATGAAGACTTTGGTTTGTGGAATCCAACAATACAAAAGTTCAAGAAGATTCCCTTGTCAGCCTTCAGTAAATTCACGAAGAGGGAAACCTTTTATGGATTAGGGTATGATTCAGTTAACGACGATTATAAATTTGTGCGATTGGCACAGTTTGAGGATCATCATCGGAGTGGTGTTGTTACAAGTTCGGAAGTGCAGGTCTACAGTCTAAAATCGCACTCATGGAAAAGGATCCAAGACTTGCCTGCTCATCTTAACAAAGATTTTGAACTTGCCTCTATAGGGGTTTGTGTTGACGGTGCTTTACATTGGTTGATGAGATTACGTGGTGAAAGTGTAAGAGGGATGATAGTTCTAACCCTTCATCTCACAACTGAAGAGTATCACTGGTTTTCTACCCCTGATTATAATTATCCATGTCGCTGTGCAAATTCAAAGGACGAGCGTAAAAACAGGCACTGTTTGTTTTTGCAAGTTTTGGGAGGGTGCTTATGTTTTCGATTCCAATGTGATCTCCTGGATGCTTGGATTTTGAAGGAAAATGGAGTTGCCGAATCATGGACTAAACTTTATTCTACCAAGGAATTGCCCGAGTTATTTTCCTGCCAGCCGTTGATGCTTTCTGAGTGTGGTAAAATGGTTCTTTTCTCAAATCACTTCGGGAACACTTTCTGGTTTGATTTAGAGAATAAGAAACGTAAAGCGGTGGCCAGACCTGATGAGCGTATTTTTGGCTTTGACACGTTAATTACTTGTCAAACCCTTCATCTTCTTAGGAGGCGACCAGAGCTTCCTTGTAATTACTGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

809

Amino Acids

92.57

Weight (kDa)

8.23

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 113 - 233 4.3e-09 Protein of unknown function (DUF1668)
F-box-like PF12937 420 - 458 2.4e-09 F-box-like
F-box PF00646 420 - 458 3e-09 F-box domain
FBA_1 PF07734 486 - 755 2.9e-23 F-box associated beta propeller domain
FBA_3 PF08268 505 - 728 2.4e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 540, 1746, 2025
Acc36I ACCTGC 1 cut(s) 1804
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 1818
AciI CCGC 7 cut(s) 114, 151, 244, 321, 417, 701, 2321
AclWI GGATC 7 cut(s) 460, 488, 1415, 1428, 1782, 1843, 1856
AcoI YGGCCR 5 cut(s) 458, 698, 736, 1374, 2325
AcsI RAATTY 5 cut(s) 964, 998, 1688, 1748, 2047
AcuI CTGAAG 3 cut(s) 223, 1666, 2013
AcvI CACGTG 1 cut(s) 1329
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 7 cut(s) 475, 533, 616, 745, 1372, 1899, 2175
AflIII ACRYGT 1 cut(s) 2358
AjnI CCWGG 4 cut(s) 85, 532, 1010, 2133
AluBI AGCT 3 cut(s) 157, 430, 2407
AluI AGCT 3 cut(s) 157, 430, 2407
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 7 cut(s) 460, 488, 1415, 1428, 1782, 1843, 1856
AlwNI CAGNNNCTG 2 cut(s) 407, 2076
Ama87I CYCGRG 1 cut(s) 2207
AoxI GGCC 8 cut(s) 458, 477, 698, 736, 747, 1374, 1479, 2325
ApeKI GCWGC 3 cut(s) 131, 1242, 1352
ApoI RAATTY 5 cut(s) 964, 998, 1688, 1748, 2047
Asp700I GAANNNNTTC 1 cut(s) 2285
Asp718I GGTACC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 3 cut(s) 367, 747, 1179
AsuC2I CCSGG 2 cut(s) 476, 740
AsuHPI GGTGA 6 cut(s) 372, 536, 773, 851, 1000, 1958
AvaI CYCGRG 1 cut(s) 2207
AvaII GGWCC 2 cut(s) 367, 1179
BaeGI GKGCMC 1 cut(s) 64
BalI TGGCCA 2 cut(s) 1376, 2327
BamHI GGATCC 2 cut(s) 1420, 1848
BanI GGYRCC 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 1329
BbsI GAAGAC 1 cut(s) 1629
BbvI GCAGC 3 cut(s) 143, 1254, 1339
BccI CCATC 6 cut(s) 406, 830, 1364, 1398, 1406, 1590
BceAI ACGGC 4 cut(s) 64, 560, 734, 2212
BcgI CGANNNNNNTGC 2 cut(s) 1231, 1265
BciT130I CCWGG 4 cut(s) 87, 534, 1012, 2135
BclI TGATCA 1 cut(s) 1167
BcnI CCSGG 2 cut(s) 476, 740
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 2 cut(s) 1176, 1602
BfmI CTRYAG 2 cut(s) 1819, 1896
BfuAI ACCTGC 1 cut(s) 1804
BglI GCCNNNNNGGC 1 cut(s) 1251
BisI GCNGC 6 cut(s) 132, 151, 244, 701, 1243, 1353
BlsI GCNGC 6 cut(s) 133, 152, 245, 702, 1244, 1354
Bme1390I CCNGG 6 cut(s) 87, 476, 534, 740, 1012, 2135
Bme18I GGWCC 2 cut(s) 367, 1179
BmeT110I CYCGRG 1 cut(s) 2207
BmgT120I GGNCC 3 cut(s) 367, 747, 1179
BmiI GGNNCC 4 cut(s) 204, 369, 1422, 1850
BmrFI CCNGG 6 cut(s) 87, 476, 534, 740, 1012, 2135
BmsI GCATC 5 cut(s) 1014, 1393, 1534, 2128, 2223
BpiI GAAGAC 1 cut(s) 1629
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 182, 369
BpuMI CCSGG 2 cut(s) 476, 740
Bsa29I ATCGAT 1 cut(s) 1528
BsaAI YACGTR 3 cut(s) 625, 1329, 1943
BsaBI GATNNNNATC 1 cut(s) 1779
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 4 cut(s) 474, 739, 750, 2196
BsaWI WCCGGW 2 cut(s) 205, 546
BsaXI ACNNNNNCTCC 8 cut(s) 81, 111, 344, 374, 878, 908, 1371, 1401
Bsc4I CCNNNNNNNGG 7 cut(s) 475, 533, 616, 745, 1372, 1899, 2175
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 4 cut(s) 585, 991, 1475, 2009
Bse3DI GCAATG 1 cut(s) 1244
Bse8I GATNNNNATC 1 cut(s) 1779
BseBI CCWGG 4 cut(s) 87, 534, 1012, 2135
BseCI ATCGAT 1 cut(s) 1528
BseDI CCNNGG 4 cut(s) 474, 739, 750, 2196
BseGI GGATG 8 cut(s) 317, 841, 1263, 1356, 1601, 1612, 1968, 2143
BseJI GATNNNNATC 1 cut(s) 1779
BseLI CCNNNNNNNGG 7 cut(s) 475, 533, 616, 745, 1372, 1899, 2175
BseMI GCAATG 1 cut(s) 1244
BseMII CTCAG 1 cut(s) 2232
BseNI ACTGG 4 cut(s) 585, 991, 1475, 2009
BseRI GAGGAG 3 cut(s) 105, 132, 1050
BseSI GKGCMC 1 cut(s) 64
BseX3I CGGCCG 1 cut(s) 736
BseXI GCAGC 3 cut(s) 143, 1254, 1339
BsgI GTGCAG 2 cut(s) 1431, 1832
Bsh1285I CGRYCG 1 cut(s) 739
BshFI GGCC 8 cut(s) 460, 479, 700, 738, 749, 1376, 1481, 2327
BshNI GGYRCC 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 1528
BsiEI CGRYCG 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 2207
BsiSI CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
BslFI GGGAC 2 cut(s) 353, 913
BslI CCNNNNNNNGG 7 cut(s) 475, 533, 616, 745, 1372, 1899, 2175
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 353, 913
BsmI GAATGC 6 cut(s) 37, 211, 458, 629, 806, 1354
BsnI GGCC 8 cut(s) 460, 479, 700, 738, 749, 1376, 1481, 2327
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 2207
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 7 cut(s) 114, 151, 244, 321, 417, 701, 2321
BspANI GGCC 8 cut(s) 460, 479, 700, 738, 749, 1376, 1481, 2327
BspCNI CTCAG 1 cut(s) 2233
BspDI ATCGAT 1 cut(s) 1528
BspHI TCATGA 1 cut(s) 1462
BspLI GGNNCC 4 cut(s) 204, 369, 1422, 1850
BspMI ACCTGC 1 cut(s) 1804
BspPI GGATC 7 cut(s) 460, 488, 1415, 1428, 1782, 1843, 1856
BspT107I GGYRCC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 1244
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 4 cut(s) 585, 991, 1475, 2009
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 474, 739, 750, 2196
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 2196
Bst2UI CCWGG 4 cut(s) 87, 534, 1012, 2135
Bst4CI ACNGT 7 cut(s) 409, 1571, 1767, 1823, 1916, 2078, 2423
Bst6I CTCTTC 3 cut(s) 1152, 1691, 1989
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 1349
BstBAI YACGTR 3 cut(s) 625, 1329, 1943
BstC8I GCNNGC 4 cut(s) 155, 458, 1863, 2225
BstDEI CTNAG 3 cut(s) 1561, 2241, 2390
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 8 cut(s) 317, 841, 1263, 1356, 1601, 1612, 1968, 2143
BstHHI GCGC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 293
BstMCI CGRYCG 1 cut(s) 739
BstMWI GCNNNNNNNGC 6 cut(s) 111, 163, 1251, 1349, 2233, 2404
BstNI CCWGG 4 cut(s) 87, 534, 1012, 2135
BstSCI CCNGG 6 cut(s) 85, 474, 532, 738, 1010, 2133
BstSFI CTRYAG 2 cut(s) 1819, 1896
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 143, 1254, 1339
BstV2I GAAGAC 1 cut(s) 1629
BstX2I RGATCY 3 cut(s) 465, 1420, 1848
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 3 cut(s) 465, 1420, 1848
BstZI CGGCCG 1 cut(s) 736
Bsu15I ATCGAT 1 cut(s) 1528
BsuRI GGCC 8 cut(s) 460, 479, 700, 738, 749, 1376, 1481, 2327
BsuTUI ATCGAT 1 cut(s) 1528
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 8 cut(s) 317, 841, 1263, 1356, 1601, 1612, 1968, 2143
BtsIMutI CAGTG 3 cut(s) 1482, 2002, 2074
BveI ACCTGC 1 cut(s) 1804
Cac8I GCNNGC 4 cut(s) 155, 458, 1863, 2225
CaiI CAGNNNCTG 2 cut(s) 407, 2076
CciI TCATGA 1 cut(s) 1462
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 3 cut(s) 367, 747, 1179
ClaI ATCGAT 1 cut(s) 1528
CseI GACGC 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 1010
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 1257, 1292
CviAII CATG 7 cut(s) 789, 1183, 1344, 1463, 1839, 2034, 2175
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 3 cut(s) 1561, 2241, 2390
EaeI YGGCCR 5 cut(s) 458, 698, 736, 1374, 2325
EagI CGGCCG 1 cut(s) 736
Eam1104I CTCTTC 3 cut(s) 1152, 1691, 1989
EarI CTCTTC 3 cut(s) 1152, 1691, 1989
EciI GGCGGA 2 cut(s) 129, 406
EclXI CGGCCG 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 2196
Eco31I GGTCTC 1 cut(s) 293
Eco32I GATATC 1 cut(s) 1288
Eco47I GGWCC 2 cut(s) 367, 1179
Eco52I CGGCCG 1 cut(s) 736
Eco57I CTGAAG 3 cut(s) 223, 1666, 2013
Eco72I CACGTG 1 cut(s) 1329
Eco88I CYCGRG 1 cut(s) 2207
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoRII CCWGG 4 cut(s) 85, 532, 1010, 2133
EcoRV GATATC 1 cut(s) 1288
EcoT14I CCWWGG 1 cut(s) 2196
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 2196
FaeI CATG 7 cut(s) 792, 1186, 1347, 1466, 1842, 2037, 2178
FalI AAGNNNNNCTT 2 cut(s) 1655, 1687
FaqI GGGAC 2 cut(s) 353, 913
FatI CATG 7 cut(s) 788, 1182, 1343, 1462, 1838, 2033, 2174
FbaI TGATCA 1 cut(s) 1167
FblI GTMKAC 1 cut(s) 1818
Fnu4HI GCNGC 6 cut(s) 132, 151, 244, 701, 1243, 1353
FokI GGATG 8 cut(s) 304, 848, 1250, 1343, 1608, 1619, 1975, 2150
Fsp4HI GCNGC 6 cut(s) 132, 151, 244, 701, 1243, 1353
FspBI CTAG 2 cut(s) 1176, 1602
GlaI GCGC 1 cut(s) 36
GluI GCNGC 6 cut(s) 132, 151, 244, 701, 1243, 1353
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 8 cut(s) 460, 479, 700, 738, 749, 1376, 1481, 2327
HapII CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 7 cut(s) 792, 1186, 1347, 1466, 1842, 2037, 2178
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 3 cut(s) 1305, 1735, 1912
HindII GTYRAC 3 cut(s) 1305, 1735, 1912
HindIII AAGCTT 1 cut(s) 428
HpaI GTTAAC 1 cut(s) 1735
HpaII CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
HphI GGTGA 6 cut(s) 372, 536, 773, 851, 1000, 1958
Hpy166II GTNNAC 6 cut(s) 600, 1081, 1305, 1735, 1819, 1912
Hpy188I TCNGA 6 cut(s) 43, 1261, 1459, 1785, 1807, 2242
Hpy188III TCNNGA 9 cut(s) 449, 995, 1051, 1402, 1463, 1593, 1660, 1693, 2278
Hpy8I GTNNAC 6 cut(s) 600, 1081, 1305, 1735, 1819, 1912
Hpy99I CGWCG 2 cut(s) 110, 1742
HpyAV CCTTC 7 cut(s) 911, 1025, 1035, 1690, 1988, 2146, 2390
HpyCH4III ACNGT 7 cut(s) 409, 1571, 1767, 1823, 1916, 2078, 2423
HpyCH4IV ACGT 6 cut(s) 624, 976, 1328, 1942, 2314, 2360
HpyF10VI GCNNNNNNNGC 6 cut(s) 111, 163, 1251, 1349, 2233, 2404
HpyF3I CTNAG 3 cut(s) 1561, 2241, 2390
HpySE526I ACGT 6 cut(s) 624, 976, 1328, 1942, 2314, 2360
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 7 cut(s) 792, 1186, 1347, 1466, 1842, 2037, 2178
HspAI GCGC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 1167
KspAI GTTAAC 1 cut(s) 1735
LmnI GCTCC 2 cut(s) 208, 251
Lsp1109I GCAGC 3 cut(s) 143, 1254, 1339
LweI GCATC 5 cut(s) 1014, 1393, 1534, 2128, 2223
MabI ACCWGGT 1 cut(s) 1010
MaeI CTAG 2 cut(s) 1176, 1602
MaeII ACGT 6 cut(s) 624, 976, 1328, 1942, 2314, 2360
MaeIII GTNAC 8 cut(s) 378, 637, 664, 844, 1112, 1565, 1795, 2423
MbiI CCGCTC 1 cut(s) 246
MfeI CAATTG 1 cut(s) 1370
MflI RGATCY 3 cut(s) 465, 1420, 1848
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 2 cut(s) 1376, 2327
MluNI TGGCCA 2 cut(s) 1376, 2327
MlyI GAGTC 2 cut(s) 1085, 1317
MmeI TCCRAC 3 cut(s) 106, 997, 1667
Mox20I TGGCCA 2 cut(s) 1376, 2327
Mph1103I ATGCAT 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 2285
MscI TGGCCA 2 cut(s) 1376, 2327
MseI TTAA 7 cut(s) 719, 780, 1109, 1521, 1734, 1872, 2363
MslI CAYNNNNRTG 2 cut(s) 42, 1785
Msp20I TGGCCA 2 cut(s) 1376, 2327
MspI CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
MspR9I CCNGG 6 cut(s) 87, 476, 534, 740, 1012, 2135
MunI CAATTG 1 cut(s) 1370
Mva1269I GAATGC 6 cut(s) 37, 211, 458, 629, 806, 1354
MvaI CCWGG 4 cut(s) 87, 534, 1012, 2135
MwoI GCNNNNNNNGC 6 cut(s) 111, 163, 1251, 1349, 2233, 2404
NciI CCSGG 2 cut(s) 476, 740
NlaIII CATG 7 cut(s) 792, 1186, 1347, 1466, 1842, 2037, 2178
NlaIV GGNNCC 4 cut(s) 204, 369, 1422, 1850
NmuCI GTSAC 3 cut(s) 378, 637, 664
NsiI ATGCAT 1 cut(s) 291
PagI TCATGA 1 cut(s) 1462
PctI GAATGC 6 cut(s) 37, 211, 458, 629, 806, 1354
PdmI GAANNNNTTC 1 cut(s) 2285
PfeI GAWTC 8 cut(s) 445, 515, 866, 1639, 1666, 1727, 2118, 2171
PfoI TCCNGGA 1 cut(s) 2133
PkrI GCNGC 6 cut(s) 133, 152, 245, 702, 1244, 1354
PleI GAGTC 2 cut(s) 1085, 1317
PmaCI CACGTG 1 cut(s) 1329
PmlI CACGTG 1 cut(s) 1329
PpsI GAGTC 2 cut(s) 1085, 1317
Ppu21I YACGTR 3 cut(s) 625, 1329, 1943
PsiI TTATAA 3 cut(s) 540, 1746, 2025
Psp6I CCWGG 4 cut(s) 85, 532, 1010, 2133
PspCI CACGTG 1 cut(s) 1329
PspGI CCWGG 4 cut(s) 85, 532, 1010, 2133
PspN4I GGNNCC 4 cut(s) 204, 369, 1422, 1850
PspPI GGNCC 3 cut(s) 367, 747, 1179
PstNI CAGNNNCTG 2 cut(s) 407, 2076
PsuI RGATCY 3 cut(s) 465, 1420, 1848
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 42, 1785
SaqAI TTAA 7 cut(s) 719, 780, 1109, 1521, 1734, 1872, 2363
SatI GCNGC 6 cut(s) 132, 151, 244, 701, 1243, 1353
Sau96I GGNCC 3 cut(s) 367, 747, 1179
SchI GAGTC 2 cut(s) 1085, 1317
ScrFI CCNGG 6 cut(s) 87, 476, 534, 740, 1012, 2135
SduI GDGCHC 1 cut(s) 64
SexAI ACCWGGT 1 cut(s) 1010
SfaNI GCATC 5 cut(s) 1014, 1393, 1534, 2128, 2223
SfcI CTRYAG 2 cut(s) 1819, 1896
SinI GGWCC 2 cut(s) 367, 1179
SmiMI CAYNNNNRTG 2 cut(s) 42, 1785
SmlI CTYRAG 2 cut(s) 161, 384
SmoI CTYRAG 2 cut(s) 161, 384
SsiI CCGC 7 cut(s) 114, 151, 244, 321, 417, 701, 2321
SspMI CTAG 2 cut(s) 1176, 1602
StyD4I CCNGG 6 cut(s) 85, 474, 532, 738, 1010, 2133
StyI CCWWGG 1 cut(s) 2196
TaaI ACNGT 7 cut(s) 409, 1571, 1767, 1823, 1916, 2078, 2423
TaiI ACGT 6 cut(s) 627, 979, 1331, 1945, 2317, 2363
TaqI TCGA 3 cut(s) 1029, 1528, 2116
TauI GCSGC 3 cut(s) 153, 246, 703
TfiI GAWTC 8 cut(s) 445, 515, 866, 1639, 1666, 1727, 2118, 2171
Tru1I TTAA 7 cut(s) 719, 780, 1109, 1521, 1734, 1872, 2363
Tru9I TTAA 7 cut(s) 719, 780, 1109, 1521, 1734, 1872, 2363
TscAI CASTG 3 cut(s) 1482, 2009, 2081
TseFI GTSAC 3 cut(s) 378, 637, 664
TseI GCWGC 3 cut(s) 131, 1242, 1352
Tsp45I GTSAC 3 cut(s) 378, 637, 664
TspGWI ACGGA 2 cut(s) 365, 859
TspRI CASTG 3 cut(s) 1482, 2009, 2081
VpaK11BI GGWCC 2 cut(s) 367, 1179
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 5 cut(s) 964, 998, 1688, 1748, 2047
XmiI GTMKAC 1 cut(s) 1818
XmnI GAANNNNTTC 1 cut(s) 2285
XspI CTAG 2 cut(s) 1176, 1602
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.