Rh2CG595200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000424
Physical Location & Seq
Forward (+)
77140473 .. 77141030
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG595200.1

Sequence Viewer

Length: 558 bp
ATGGCCAACCTTTCAACAAAATCATATTTACCGCCGGAAATGATCTTTAACATCCTTTTACGGCTCCCAACCAAGGATCTCATACGGTTCATGTGTGTTTGTAGAGCTTGGAATGCTACTATCCACGACGAAAAGTTCATCAAACCTCATCATGACCTCATGACAACCAACAGTTCTCGCACCCTTGTACTTATACCATACGGTCCACTGTCCGGAGAACCCTCTGTATCGATTTCTTTCGACGGAGATGTATTTGGTAATGCCGTGAGAATTCAGCGGCCATTGGAACAAAATACCAGGATAGTGAGTTACTGTAACGGTTTGGTTTGCATTAATATCTATGATGCAGTATCTAAACAAGAGGATTTTGCAGTATGGAATCCGTCGATTCAAAGGTTGAAGAGAATTCCCTTAACAGCCATCGAGCTGCCAGCAGGGCCTACAGCGAGATATCCGAAGTGGATGTATGGGTTTGGGTACGATTCAACCAATGATGACCATAAATTTGTGAAAGCGGTGGTATCTGTTGATGGGAATCATGAACTGATTCGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

185

Amino Acids

21.01

Weight (kDa)

8.67

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 9 - 44 1.3e-09 F-box-like
F-box PF00646 10 - 47 3.3e-11 F-box domain
FBA_1 PF07734 96 - 178 5.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 3 cut(s) 32, 277, 515
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 2 cut(s) 3, 278
AcsI RAATTY 3 cut(s) 270, 405, 503
AfaI GTAC 2 cut(s) 189, 479
AfiI CCNNNNNNNGG 2 cut(s) 73, 212
AgsI TTSAA 4 cut(s) 15, 392, 400, 486
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 2 cut(s) 107, 427
AluI AGCT 2 cut(s) 107, 427
AlwI GGATC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 3 cut(s) 3, 278, 437
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 3 cut(s) 270, 405, 503
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AseI ATTAAT 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 203, 437
AsuII TTCGAA 1 cut(s) 550
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 414
BccI CCATC 2 cut(s) 428, 524
BceAI ACGGC 2 cut(s) 77, 248
BciT130I CCWGG 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 278, 428
BlsI GCNGC 2 cut(s) 279, 429
Bme1390I CCNGG 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 203, 437
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 550
Bsa29I ATCGAT 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 212
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 51, 468
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 2 cut(s) 73, 212
BseXI GCAGC 1 cut(s) 414
BshFI GGCC 3 cut(s) 5, 280, 439
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 2 cut(s) 35, 213
BslI CCNNNNNNNGG 2 cut(s) 73, 212
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 3 cut(s) 5, 280, 439
Bsp119I TTCGAA 1 cut(s) 550
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 2 cut(s) 42, 76
BspACI CCGC 3 cut(s) 32, 277, 515
BspANI GGCC 3 cut(s) 5, 280, 439
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 212
BspHI TCATGA 3 cut(s) 151, 159, 538
BspLI GGNNCC 1 cut(s) 65
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 550
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 42, 76
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
Bst6I CTCTTC 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 432
BstF5I GGATG 2 cut(s) 51, 468
BstKTI GATC 2 cut(s) 45, 79
BstMBI GATC 2 cut(s) 42, 76
BstMWI GCNNNNNNNGC 2 cut(s) 113, 436
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 230
BsuRI GGCC 3 cut(s) 5, 280, 439
BsuTUI ATCGAT 1 cut(s) 230
BtsCI GGATG 2 cut(s) 51, 468
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 3 cut(s) 151, 159, 538
Cfr13I GGNCC 2 cut(s) 203, 437
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 188, 478
CviAII CATG 4 cut(s) 91, 152, 160, 539
CviJI RGCY 7 cut(s) 5, 64, 107, 280, 419, 427, 439
CviKI_1 RGCY 7 cut(s) 5, 64, 107, 280, 419, 427, 439
CviQI GTAC 2 cut(s) 188, 478
DpnI GATC 2 cut(s) 44, 78
DpnII GATC 2 cut(s) 42, 76
EaeI YGGCCR 2 cut(s) 3, 278
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 437
EcoRI GAATTC 2 cut(s) 270, 405
EcoRII CCWGG 1 cut(s) 296
EcoRV GATATC 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 94, 155, 163, 542
FatI CATG 4 cut(s) 90, 151, 159, 538
Fnu4HI GCNGC 2 cut(s) 278, 428
FokI GGATG 2 cut(s) 38, 475
Fsp4HI GCNGC 2 cut(s) 278, 428
GluI GCNGC 2 cut(s) 278, 428
HaeIII GGCC 3 cut(s) 5, 280, 439
HapII CCGG 2 cut(s) 35, 213
Hin1II CATG 4 cut(s) 94, 155, 163, 542
HinfI GANTC 5 cut(s) 379, 388, 482, 535, 547
HpaII CCGG 2 cut(s) 35, 213
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 4 cut(s) 152, 160, 213, 539
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 3 cut(s) 131, 245, 388
HpyCH4III ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
HpyCH4V TGCA 3 cut(s) 330, 347, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 436
Hsp92II CATG 4 cut(s) 94, 155, 163, 542
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 2 cut(s) 42, 76
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 6 cut(s) 48, 226, 283, 310, 420, 444
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 334
MaeIII GTNAC 2 cut(s) 308, 314
MalI GATC 2 cut(s) 44, 78
MboI GATC 2 cut(s) 42, 76
MboII GAAGA 1 cut(s) 412
MflI RGATCY 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 270, 405, 503
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 156, 167, 232, 355
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 48, 333, 413
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 2 cut(s) 35, 213
MspR9I CCNGG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 113, 436
NdeII GATC 2 cut(s) 42, 76
NlaIII CATG 4 cut(s) 94, 155, 163, 542
NlaIV GGNNCC 1 cut(s) 65
NspV TTCGAA 1 cut(s) 550
PagI TCATGA 3 cut(s) 151, 159, 538
PctI GAATGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 5 cut(s) 379, 388, 482, 535, 547
PkrI GCNGC 2 cut(s) 279, 429
PshBI ATTAAT 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 2 cut(s) 203, 437
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 189, 479
RsaNI GTAC 2 cut(s) 188, 478
SaqAI TTAA 3 cut(s) 48, 333, 413
SatI GCNGC 2 cut(s) 278, 428
Sau3AI GATC 2 cut(s) 42, 76
Sau96I GGNCC 2 cut(s) 203, 437
ScrFI CCNGG 1 cut(s) 298
SetI ASST 6 cut(s) 12, 109, 148, 159, 398, 429
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 550
SinI GGWCC 1 cut(s) 203
Sse9I AATT 3 cut(s) 270, 405, 503
SsiI CCGC 3 cut(s) 32, 277, 515
StyD4I CCNGG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 6 cut(s) 87, 173, 203, 210, 314, 320
TaqI TCGA 5 cut(s) 230, 240, 386, 423, 550
TasI AATT 3 cut(s) 270, 405, 503
TatI WGTACW 1 cut(s) 187
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 5 cut(s) 379, 388, 482, 535, 547
Tru1I TTAA 3 cut(s) 48, 333, 413
Tru9I TTAA 3 cut(s) 48, 333, 413
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 79, 127, 555
TspGWI ACGGA 2 cut(s) 258, 372
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 3 cut(s) 270, 405, 503
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.