Rh2CG595300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000424
Physical Location & Seq
Forward (+)
77141127 .. 77141447
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG595300.1

Sequence Viewer

Length: 321 bp
ATGGTGCATTGGCTGATGCATCGTAACTTAATTGTAACTCTGGATCTCGCAACTGAGAAGTATGACCATTTTCCCACCCCGGTGGTTGTTGATCTCATTGTTGATCCCTTTCGATGGACTTTGGAGGTCTTGGGAGGATATCTGTGTGTGTATTCTGAAGACAGAGGCTCATATTTGAATGACGTTTGGATTATGAAAGAATATGGAGTGACAGCATCTTGGACTCGGTTATATACTATGGATGCGAGGGATATGCCTCGGAGGCCTTTTCAGTATCCCCACCCCTATTATAAACCCTTGGTGTTTTCAAAGACCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

106

Amino Acids

12.63

Weight (kDa)

6.39

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AclWI GGATC 2 cut(s) 51, 98
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 2 cut(s) 178, 309
AleI CACNNNNGTG 1 cut(s) 80
AlwI GGATC 2 cut(s) 51, 98
AoxI GGCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 165
BccI CCATC 1 cut(s) 108
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciVI GTATCC 1 cut(s) 285
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 319
BfuI GTATCC 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 4 cut(s) 6, 28, 224, 232
BpiI GAAGAC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 78, 257, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 78, 257, 297
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 45
BshFI GGCC 1 cut(s) 265
BsiSI CCGG 2 cut(s) 80, 315
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 43, 91, 103
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 46
BspPI GGATC 2 cut(s) 51, 98
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 78, 257, 297
BssMI GATC 3 cut(s) 43, 91, 103
BssT1I CCWWGG 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 46, 94, 106
BstMBI GATC 3 cut(s) 43, 91, 103
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 82
BstYI RGATCY 1 cut(s) 43
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 314
CviJI RGCY 4 cut(s) 13, 168, 265, 318
CviKI_1 RGCY 4 cut(s) 13, 168, 265, 318
DdeI CTNAG 1 cut(s) 54
DpnI GATC 3 cut(s) 45, 93, 105
DpnII GATC 3 cut(s) 43, 91, 103
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 265
Eco32I GATATC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 297
FaiI YATR 9 cut(s) 63, 172, 194, 204, 232, 234, 239, 254, 291
FokI GGATG 1 cut(s) 254
FspBI CTAG 1 cut(s) 319
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 80, 315
HinfI GANTC 1 cut(s) 223
HpaII CCGG 2 cut(s) 80, 315
Hpy188I TCNGA 2 cut(s) 157, 261
Hpy188III TCNNGA 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 7, 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 183
Kzo9I GATC 3 cut(s) 43, 91, 103
LpnPI CCDG 2 cut(s) 26, 93
LweI GCATC 4 cut(s) 6, 28, 224, 232
MaeI CTAG 1 cut(s) 319
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 23, 34, 208
MalI GATC 3 cut(s) 45, 93, 105
MboI GATC 3 cut(s) 43, 91, 103
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 43
MluCI AATT 1 cut(s) 30
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 6 cut(s) 118, 128, 158, 240, 255, 267
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 80, 315
MspR9I CCNGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 80
NdeII GATC 3 cut(s) 43, 91, 103
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 21
OliI CACNNNNGTG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 265
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsiI TTATAA 1 cut(s) 291
PsuI RGATCY 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 3 cut(s) 43, 91, 103
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 80
SetI ASST 2 cut(s) 129, 186
SfaNI GCATC 4 cut(s) 6, 28, 224, 232
SmiMI CAYNNNNRTG 1 cut(s) 80
Sse9I AATT 1 cut(s) 30
SseBI AGGCCT 1 cut(s) 265
SspMI CTAG 1 cut(s) 319
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 30
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 209
XspI CTAG 1 cut(s) 319
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.