Rh6BG368500

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000424
Physical Location & Seq
Forward (+)
59831781 .. 59832110
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG368500.1

Sequence Viewer

Length: 330 bp
ATGCAAGAGGATGACCCAGAGAGTGAGGCAGAGACGACAGAGTTCTTCTCAGCAGCCTTCTATTCGAGGGACAGATTCAGCAATGCTCGCAAGATTATGCAACCCTTGGCACACCCTGAGAGAGTGACAGGATTTGTGGGCAGCTGTAATGGATTGCTCCTCCTGCACAATCGATATCACAATCGAGACCTGGCAATTTGTAATCCGACGATTCAGAAATTCAAGAGAATTCCCTTTACACCCATTGAGTTGCCGGCTGGGACTCAGACGACACATTCGATGTATGGTTTTGGATATGATCAATCCAGTAGTGACTACAAAATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

109

Amino Acids

12.45

Weight (kDa)

6.04

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 14 - 109 7.8e-07 F-box associated beta propeller domain
FBA_1 PF07734 46 - 109 4e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 218, 228
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 26, 180
ApeKI GCWGC 2 cut(s) 53, 141
ApoI RAATTY 2 cut(s) 218, 228
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
BbvI GCAGC 2 cut(s) 65, 153
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 26, 180
BisI GCNGC 2 cut(s) 54, 142
BlsI GCNGC 2 cut(s) 55, 143
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bsa29I ATCGAT 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 63, 108, 278
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 65, 153
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 149
BshVI ATCGAT 1 cut(s) 172
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 83, 274
BsmAI GTCTC 2 cut(s) 26, 180
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 83, 274
Bso31I GGTCTC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 298
BspCNI CTCAG 3 cut(s) 62, 109, 277
BspDI ATCGAT 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 88, 255
BstDEI CTNAG 3 cut(s) 49, 117, 264
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 26, 180
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 87, 163
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 65, 153
Bsu15I ATCGAT 1 cut(s) 172
BsuTUI ATCGAT 1 cut(s) 172
BtsCI GGATG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 88, 255
Cfr10I RCCGGY 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 172
CviJI RGCY 3 cut(s) 56, 144, 257
CviKI_1 RGCY 3 cut(s) 56, 144, 257
DdeI CTNAG 3 cut(s) 49, 117, 264
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 26
FaiI YATR 3 cut(s) 98, 285, 297
FaqI GGGAC 2 cut(s) 83, 274
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 54, 142
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 54, 142
GluI GCNGC 2 cut(s) 54, 142
GsaI CCCAGC 1 cut(s) 261
HapII CCGG 1 cut(s) 254
HinfI GANTC 3 cut(s) 75, 211, 262
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 207, 216, 267
Hpy188III TCNNGA 2 cut(s) 185, 223
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 4, 100, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 163
HpyF3I CTNAG 3 cut(s) 49, 117, 264
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 9 cut(s) 30, 114, 129, 176, 176, 203, 243, 267, 319
Lsp1109I GCAGC 2 cut(s) 65, 153
MaeIII GTNAC 2 cut(s) 124, 311
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 37
MluCI AATT 4 cut(s) 195, 218, 228, 321
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 3 cut(s) 19, 60, 170
MroNI GCCGGC 1 cut(s) 253
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 87, 163
NaeI GCCGGC 1 cut(s) 255
NdeII GATC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 124, 311
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 75, 211
PkrI GCNGC 2 cut(s) 55, 143
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 144
SatI GCNGC 2 cut(s) 54, 142
Sau3AI GATC 1 cut(s) 298
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 191
SetI ASST 2 cut(s) 146, 192
Sse9I AATT 4 cut(s) 195, 218, 228, 321
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 4 cut(s) 65, 172, 184, 278
TasI AATT 4 cut(s) 195, 218, 228, 321
TfiI GAWTC 2 cut(s) 75, 211
TseFI GTSAC 2 cut(s) 124, 311
TseI GCWGC 2 cut(s) 53, 141
Tsp45I GTSAC 2 cut(s) 124, 311
XapI RAATTY 2 cut(s) 218, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.