Prupe.3G094100_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000424
Physical Location & Seq
Forward (+)
7050168 .. 7051235
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G094100.1

Sequence Viewer

Length: 1068 bp
ATGCGGGACCTCCCAGCAGAAGTGTTTATGGACATCTTCGCACGCCTCTCACCCAAGGACTTGGTGCGATCCACTTGCGTTTCTAAAGAATGGAAGGCTACTATCGAAGATCCACAGTTGGCCAAATCGCATCTCCAACGCTCCATCAAAACCAAATCTCATCCTACCATTTTAATTATCTCATCTAACCCGATCGTCAACTGTTTTTCACTCAACTTTTCTGAGACCGATACGACGTACGGTAAACGTTTGATAATCGAGCAGCCTTGGCAGCATCCTCCTCGGTTAACTAGCGACAAAATCTTCGGCTACTTTAATGGTCTGGTTTGCATGCACGACGGTGCAGGCTTTGGTTTATGGAACCCTTCCATCCAAAAGTTCAAGAGGATCCACTCGTCGCCATTTAGTATGTTCCGGTTTGCAAAGATCCATGGTGGCTTCGGGTATGATTCGGTCAATGTTGACTATAAATTGGTTAGTTTCGTGCACTTGAATACGTTCTGCGCAGTGCACTCATATAGCCTAAAATCTGGTGCATGGAAATCAATTCAAGACTTGCCTCTCAAGGGTCTTGTATTTGACTCACAGGGTGTGTTTTTACAGCGTGCTTTACATTGGTTGACGCTTCAAGAAACAGATGGTGAACGGATGTTAAATATTCTAACCTTCGATCTTGCAAGCGAGGAGTTTTGCAAGTTTCCTCTACCCGTCCATATATTTCCTGCTCCCATATCTGATCAGGTTTGTAGGTGTCCTATTTATTCTTTAGTAGTCGTGGGAGGGTATCTATGTATTTATCTAACGGAGAGTAGATGTAAGGCTTGGATTATGAGAGAATATGGAGTGGTAGAATCTTGGAGTATGCTTTATTCTTTTGATGGGCAGGGTCACAATTGCAAGCCTTTATTGCTTTCAAGTTGTGGTAAAATGGTACTTTTGGAAGAGAACTACAGCCGTCTTGTTTGGTACGATCTACATAATGGGACGCGCAAAATGTTTCAAAGTCCTATGGCTCAATCTTTTTCCACAATTATTTGTGAGGAGAGCATTCATCTTCTTGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

356

Amino Acids

40.51

Weight (kDa)

8.2

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 505
AccII CGCG 1 cut(s) 988
AciI CCGC 1 cut(s) 4
AclI AACGTT 1 cut(s) 247
AclWI GGATC 5 cut(s) 63, 104, 382, 395, 421
AcoI YGGCCR 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 3 cut(s) 239, 933, 968
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 6 cut(s) 382, 493, 551, 629, 915, 1001
AleI CACNNNNGTG 1 cut(s) 339
Alw21I GWGCWC 2 cut(s) 489, 513
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 2 cut(s) 485, 509
AlwI GGATC 5 cut(s) 63, 104, 382, 395, 421
AoxI GGCC 1 cut(s) 120
ApaLI GTGCAC 2 cut(s) 485, 509
ApeKI GCWGC 2 cut(s) 262, 271
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 506, 990
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 42, 653
AvaII GGWCC 1 cut(s) 7
BaeGI GKGCMC 2 cut(s) 489, 513
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 489, 513
BbvI GCAGC 2 cut(s) 274, 283
BccI CCATC 4 cut(s) 152, 377, 632, 872
BceAI ACGGC 1 cut(s) 939
BcgI CGANNNNNNTGC 4 cut(s) 57, 91, 263, 297
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 949
BisI GCNGC 2 cut(s) 263, 272
BlsI GCNGC 2 cut(s) 264, 273
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 8, 362, 389
BmsI GCATC 2 cut(s) 139, 283
BpuEI CTTGAG 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 4 cut(s) 54, 266, 281, 430
BsaWI WCCGGW 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 566
BseDI CCNNGG 4 cut(s) 54, 266, 281, 430
BseGI GGATG 4 cut(s) 160, 274, 369, 654
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 213
BseRI GAGGAG 3 cut(s) 270, 698, 1055
BseSI GKGCMC 2 cut(s) 489, 513
BseXI GCAGC 2 cut(s) 274, 283
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 988
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 2 cut(s) 489, 513
BsiSI CCGG 1 cut(s) 415
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 20, 997
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 20, 997
BsmI GAATGC 1 cut(s) 1047
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 489, 513
Bsp143I GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
Bsp19I CCATGG 1 cut(s) 430
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 988
BspLI GGNNCC 3 cut(s) 8, 362, 389
BspPI GGATC 5 cut(s) 63, 104, 382, 395, 421
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 54, 266, 281, 430
BssMI GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
BssT1I CCWWGG 3 cut(s) 54, 266, 430
Bst4CI ACNGT 4 cut(s) 117, 203, 242, 341
Bst6I CTCTTC 1 cut(s) 936
BstC8I GCNNGC 6 cut(s) 43, 332, 346, 606, 679, 899
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 4 cut(s) 160, 274, 369, 654
BstFNI CGCG 1 cut(s) 988
BstHHI GCGC 2 cut(s) 506, 990
BstKTI GATC 8 cut(s) 71, 112, 195, 390, 429, 673, 739, 973
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 3 cut(s) 268, 271, 907
BstNSI RCATGY 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 949
BstSLI GKGCMC 2 cut(s) 489, 513
BstUI CGCG 1 cut(s) 988
BstV1I GCAGC 2 cut(s) 274, 283
BstX2I RGATCY 3 cut(s) 109, 387, 426
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 3 cut(s) 109, 387, 426
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 4 cut(s) 160, 274, 369, 654
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 6 cut(s) 43, 332, 346, 606, 679, 899
CfoI GCGC 2 cut(s) 506, 990
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 2 cut(s) 631, 994
Csp6I GTAC 3 cut(s) 238, 932, 967
CviAII CATG 3 cut(s) 331, 431, 537
CviQI GTAC 3 cut(s) 238, 932, 967
DdeI CTNAG 1 cut(s) 222
DpnI GATC 8 cut(s) 70, 111, 194, 389, 428, 672, 738, 972
DpnII GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
DraIII CACNNNGTG 1 cut(s) 590
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Eco130I CCWWGG 3 cut(s) 54, 266, 430
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 7
EcoT14I CCWWGG 3 cut(s) 54, 266, 430
ErhI CCWWGG 3 cut(s) 54, 266, 430
FaeI CATG 3 cut(s) 334, 434, 540
FaqI GGGAC 2 cut(s) 20, 997
FatI CATG 3 cut(s) 330, 430, 536
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 2 cut(s) 263, 272
FokI GGATG 4 cut(s) 147, 261, 356, 661
Fsp4HI GCNGC 2 cut(s) 263, 272
FspBI CTAG 1 cut(s) 291
FspI TGCGCA 1 cut(s) 505
GlaI GCGC 2 cut(s) 505, 989
GluI GCNGC 2 cut(s) 263, 272
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 415
HgaI GACGC 2 cut(s) 631, 994
HhaI GCGC 2 cut(s) 506, 990
Hin1II CATG 3 cut(s) 334, 434, 540
Hin6I GCGC 2 cut(s) 504, 988
HinP1I GCGC 2 cut(s) 504, 988
HincII GTYRAC 4 cut(s) 199, 288, 463, 621
HindII GTYRAC 4 cut(s) 199, 288, 463, 621
HinfI GANTC 3 cut(s) 449, 581, 851
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 1 cut(s) 415
HphI GGTGA 2 cut(s) 42, 653
Hpy166II GTNNAC 8 cut(s) 199, 245, 288, 463, 487, 511, 621, 644
Hpy188I TCNGA 2 cut(s) 223, 736
Hpy188III TCNNGA 3 cut(s) 382, 551, 629
Hpy8I GTNNAC 8 cut(s) 199, 245, 288, 463, 487, 511, 621, 644
Hpy99I CGWCG 3 cut(s) 238, 341, 400
HpyAV CCTTC 3 cut(s) 88, 375, 676
HpyCH4III ACNGT 4 cut(s) 117, 203, 242, 341
HpyCH4IV ACGT 3 cut(s) 236, 247, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 271, 907
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 3 cut(s) 236, 247, 497
Hsp92II CATG 3 cut(s) 334, 434, 540
HspAI GCGC 2 cut(s) 504, 988
Ksp22I TGATCA 1 cut(s) 736
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
LmnI GCTCC 2 cut(s) 146, 730
LpnPI CCDG 9 cut(s) 27, 308, 330, 428, 516, 572, 725, 735, 869
Lsp1109I GCAGC 2 cut(s) 274, 283
LweI GCATC 2 cut(s) 139, 283
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 236, 247, 497
MaeIII GTNAC 1 cut(s) 887
MalI GATC 8 cut(s) 70, 111, 194, 389, 428, 672, 738, 972
MboI GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
MboII GAAGA 5 cut(s) 28, 119, 295, 953, 1046
MfeI CAATTG 1 cut(s) 892
MflI RGATCY 3 cut(s) 109, 387, 426
MhlI GDGCHC 2 cut(s) 489, 513
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 5 cut(s) 174, 470, 546, 892, 1029
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 497
MscI TGGCCA 1 cut(s) 122
MseI TTAA 4 cut(s) 173, 287, 315, 653
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 415
MunI CAATTG 1 cut(s) 892
Mva1269I GAATGC 1 cut(s) 1047
MvnI CGCG 1 cut(s) 988
MwoI GCNNNNNNNGC 3 cut(s) 268, 271, 907
NcoI CCATGG 1 cut(s) 430
NdeII GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
NlaIII CATG 3 cut(s) 334, 434, 540
NlaIV GGNNCC 3 cut(s) 8, 362, 389
NmuCI GTSAC 1 cut(s) 887
NsbI TGCGCA 1 cut(s) 505
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 339
PaeI GCATGC 1 cut(s) 334
PctI GAATGC 1 cut(s) 1047
PdmI GAANNNNTTC 1 cut(s) 497
PfeI GAWTC 2 cut(s) 449, 851
Pfl23II CGTACG 1 cut(s) 237
PkrI GCNGC 2 cut(s) 264, 273
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 7
Psp1406I AACGTT 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 7
PspFI CCCAGC 1 cut(s) 13
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 8, 362, 389
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
PsuI RGATCY 3 cut(s) 109, 387, 426
PvuI CGATCG 1 cut(s) 195
RsaI GTAC 3 cut(s) 239, 933, 968
RsaNI GTAC 3 cut(s) 238, 932, 967
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 4 cut(s) 173, 287, 315, 653
SatI GCNGC 2 cut(s) 263, 272
Sau3AI GATC 8 cut(s) 68, 109, 192, 387, 426, 670, 736, 970
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 575
SduI GDGCHC 2 cut(s) 489, 513
SetI ASST 7 cut(s) 12, 239, 250, 500, 668, 744, 752
SfaNI GCATC 2 cut(s) 139, 283
SfcI CTRYAG 1 cut(s) 949
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 334
Sse9I AATT 5 cut(s) 174, 470, 546, 892, 1029
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 658
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 3 cut(s) 54, 266, 430
TaaI ACNGT 4 cut(s) 117, 203, 242, 341
TaiI ACGT 3 cut(s) 239, 250, 500
TaqI TCGA 3 cut(s) 105, 258, 669
TaqII GACCGA 2 cut(s) 242, 442
TasI AATT 5 cut(s) 174, 470, 546, 892, 1029
TfiI GAWTC 2 cut(s) 449, 851
Tru1I TTAA 4 cut(s) 173, 287, 315, 653
Tru9I TTAA 4 cut(s) 173, 287, 315, 653
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 2 cut(s) 262, 271
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 1 cut(s) 1040
TspGWI ACGGA 2 cut(s) 661, 818
TspRI CASTG 1 cut(s) 513
VneI GTGCAC 2 cut(s) 485, 509
VpaK11BI GGWCC 1 cut(s) 7
XceI RCATGY 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 497
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.