pycom08g06570

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000424
Physical Location & Seq
Reverse (-)
5127732 .. 5128773
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06570.2

Sequence Viewer

Length: 906 bp
ATGTATCAACCTAAGCATGTTAGACTACTTCCCACCGGAGCTACTCTTCGAATACTTCTCCCGCCCAAGGATTTGATCCGATGCATGTGTGTTTCCAAAGCTTGGAATGCTTGCATCCGCGATGGACGCTTCACCAAAAGGCATCTTCAACGCTCCATCAGCACCAACTCCGCTCGCACCATTTTATTTAGTCTACGGGGTACCATTTATCCCAAGGATTTCTTTTTGTTGGCGCTTTCCGACGACGATTCGTTCAGCACAGCTGTAGAAATTTGGCAATCTTATGAAGTGCATGTTTACAGCCTAAAATCCAACTTGTGGAAGAAGATCCAAATCATGCCTTCCAAAGGCCTTGAACTTGTTTCGAAAATCCAATTTTTAAACGGTGCTCTAAATTGGGTGATGTCTGATAACAATATGAGCATAATTTTAACTCTTGATCTTGCCACTGAGAAATATGGTGAGTTTTACTGCCCGGTCAACGGCATTTTGGATGTCAGGATTGAGCTGGTGGTCTTGGGAGGCTATCTATGTGTTTGTATTAGTAACTATAACAACAGCGAATTCGGTATTTGGATTATGAAGGAATATGGAGCTAGAGAATCTTGGACCTTGCTTTATTCAAGTAGTTCTCATCTTTGCAATCGTTACAAACCTTTGGTGTTTTCAAAAAATGGTGAAATGGTTCTTGTTCAAAGTGAGTCGCACCCTGGTCTTCGTTTGTTTGATTTAGAGGAAGAGATCGACGAATATACAGAAACACGTGGTATGCCCCCTCACAATGGAGAAGCTACTTTTGTAGTGGGGAGCCTTTGTTTTCTTGATGGTGACCCTGTAATTTGTACGAGGCAGCCAAGGGTTTCTCGTGGTGAAAGCAACAGAAGATCAAGACCAGGTATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

302

Amino Acids

34.32

Weight (kDa)

8.32

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 2 cut(s) 102, 318
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 193
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 62, 118, 171
AclWI GGATC 2 cut(s) 70, 322
AcsI RAATTY 2 cut(s) 270, 563
AcvI CACGTG 1 cut(s) 764
AfaI GTAC 2 cut(s) 202, 844
AfiI CCNNNNNNNGG 6 cut(s) 67, 102, 318, 347, 482, 782
AflIII ACRYGT 1 cut(s) 761
AgsI TTSAA 5 cut(s) 149, 356, 624, 669, 695
AjnI CCWGG 2 cut(s) 709, 892
AluBI AGCT 6 cut(s) 41, 101, 263, 508, 596, 791
AluI AGCT 6 cut(s) 41, 101, 263, 508, 596, 791
Alw21I GWGCWC 1 cut(s) 391
AlwI GGATC 2 cut(s) 70, 322
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 2 cut(s) 270, 563
AseI ATTAAT 1 cut(s) 900
Asp700I GAANNNNTTC 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 6 cut(s) 124, 412, 473, 689, 839, 881
AsuII TTCGAA 2 cut(s) 49, 365
AvaII GGWCC 1 cut(s) 609
BanI GGYRCC 1 cut(s) 200
BauI CACGAG 1 cut(s) 864
BbrPI CACGTG 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 707
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 862
BccI CCATC 3 cut(s) 116, 164, 818
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 711, 894
BcnI CCSGG 1 cut(s) 476
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 1 cut(s) 851
BlsI GCNGC 1 cut(s) 852
Bme1390I CCNGG 3 cut(s) 476, 711, 894
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 2 cut(s) 202, 809
BmrFI CCNGG 3 cut(s) 476, 711, 894
BmsI GCATC 3 cut(s) 71, 123, 151
BpiI GAAGAC 1 cut(s) 707
Bpu10I CCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 2 cut(s) 49, 365
BpuMI CCSGG 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 764
BsaBI GATNNNNATC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 66, 213, 709, 854
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 102, 318, 347, 482, 782
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 2 cut(s) 711, 894
BseDI CCNNGG 4 cut(s) 66, 213, 709, 854
BseGI GGATG 2 cut(s) 114, 499
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 6 cut(s) 67, 102, 318, 347, 482, 782
BseMII CTCAG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 862
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 2 cut(s) 36, 476
BslI CCNNNNNNNGG 6 cut(s) 67, 102, 318, 347, 482, 782
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 351
Bsp119I TTCGAA 2 cut(s) 49, 365
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 5 cut(s) 75, 327, 439, 741, 884
BspACI CCGC 3 cut(s) 62, 118, 171
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 202, 809
BspPI GGATC 2 cut(s) 70, 322
BspT104I TTCGAA 2 cut(s) 49, 365
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 66, 213, 709, 854
BssMI GATC 5 cut(s) 75, 327, 439, 741, 884
BssSI CACGAG 1 cut(s) 864
BssT1I CCWWGG 3 cut(s) 66, 213, 854
Bst2BI CACGAG 1 cut(s) 864
Bst2UI CCWGG 2 cut(s) 711, 894
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 51, 732
BstBAI YACGTR 1 cut(s) 764
BstBI TTCGAA 2 cut(s) 49, 365
BstC8I GCNNGC 2 cut(s) 112, 175
BstDEI CTNAG 2 cut(s) 12, 450
BstEII GGTNACC 1 cut(s) 827
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 114, 499
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 5 cut(s) 78, 330, 442, 744, 887
BstMBI GATC 5 cut(s) 75, 327, 439, 741, 884
BstMWI GCNNNNNNNGC 3 cut(s) 107, 126, 159
BstNI CCWGG 2 cut(s) 711, 894
BstNSI RCATGY 3 cut(s) 20, 88, 296
BstPI GGTNACC 1 cut(s) 827
BstSCI CCNGG 3 cut(s) 474, 709, 892
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 862
BstV2I GAAGAC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BsuRI GGCC 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 114, 499
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 112, 175
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 609
CseI GACGC 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 892
Csp6I GTAC 2 cut(s) 201, 843
CviAII CATG 4 cut(s) 17, 85, 293, 337
CviQI GTAC 2 cut(s) 201, 843
DdeI CTNAG 2 cut(s) 12, 450
DpnI GATC 5 cut(s) 77, 329, 441, 743, 886
DpnII GATC 5 cut(s) 75, 327, 439, 741, 884
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 51, 732
EarI CTCTTC 2 cut(s) 51, 732
Eco130I CCWWGG 3 cut(s) 66, 213, 854
Eco147I AGGCCT 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 609
Eco72I CACGTG 1 cut(s) 764
Eco91I GGTNACC 1 cut(s) 827
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO65I GGTNACC 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 709, 892
EcoT14I CCWWGG 3 cut(s) 66, 213, 854
EcoT22I ATGCAT 1 cut(s) 86
ErhI CCWWGG 3 cut(s) 66, 213, 854
FaeI CATG 4 cut(s) 20, 88, 296, 340
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FatI CATG 4 cut(s) 16, 84, 292, 336
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 851
FokI GGATG 2 cut(s) 101, 506
Fsp4HI GCNGC 1 cut(s) 851
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 851
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 36, 476
HgaI GACGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 20, 88, 296, 340
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 3 cut(s) 248, 602, 701
HpaII CCGG 2 cut(s) 36, 476
HphI GGTGA 6 cut(s) 124, 412, 473, 689, 839, 881
Hpy166II GTNNAC 3 cut(s) 194, 298, 481
Hpy188I TCNGA 3 cut(s) 80, 241, 409
Hpy188III TCNNGA 4 cut(s) 437, 499, 821, 888
Hpy8I GTNNAC 3 cut(s) 194, 298, 481
Hpy99I CGWCG 3 cut(s) 245, 248, 749
HpyAV CCTTC 2 cut(s) 351, 577
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 763
HpyCH4V TGCA 4 cut(s) 84, 114, 292, 642
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 126, 159
HpyF3I CTNAG 2 cut(s) 12, 450
HpySE526I ACGT 1 cut(s) 763
Hsp92II CATG 4 cut(s) 20, 88, 296, 340
HspAI GCGC 1 cut(s) 233
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 5 cut(s) 75, 327, 439, 741, 884
LmnI GCTCC 4 cut(s) 38, 158, 593, 807
LpnPI CCDG 8 cut(s) 49, 484, 489, 494, 696, 723, 846, 879
Lsp1109I GCAGC 1 cut(s) 862
LweI GCATC 3 cut(s) 71, 123, 151
MabI ACCWGGT 1 cut(s) 892
MaeI CTAG 1 cut(s) 597
MaeII ACGT 1 cut(s) 763
MaeIII GTNAC 3 cut(s) 545, 647, 827
MalI GATC 5 cut(s) 77, 329, 441, 743, 886
MbiI CCGCTC 1 cut(s) 173
MboI GATC 5 cut(s) 75, 327, 439, 741, 884
MboII GAAGA 7 cut(s) 38, 137, 334, 337, 707, 749, 894
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 7 cut(s) 270, 374, 394, 426, 563, 837, 901
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 264, 336
MnlI CCTC 4 cut(s) 515, 727, 786, 840
Mph1103I ATGCAT 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 3 cut(s) 380, 431, 900
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 36, 476
MspR9I CCNGG 3 cut(s) 476, 711, 894
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 711, 894
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 107, 126, 159
NciI CCSGG 1 cut(s) 476
NdeII GATC 5 cut(s) 75, 327, 439, 741, 884
NlaIII CATG 4 cut(s) 20, 88, 296, 340
NlaIV GGNNCC 2 cut(s) 202, 809
NmuCI GTSAC 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 3 cut(s) 20, 88, 296
NspV TTCGAA 2 cut(s) 49, 365
PceI AGGCCT 1 cut(s) 351
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 248, 602
PflMI CCANNNNNTGG 2 cut(s) 102, 318
PkrI GCNGC 1 cut(s) 852
PleI GAGTC 1 cut(s) 709
PmaCI CACGTG 1 cut(s) 764
PmlI CACGTG 1 cut(s) 764
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 764
PshBI ATTAAT 1 cut(s) 900
Psp6I CCWGG 2 cut(s) 709, 892
PspCI CACGTG 1 cut(s) 764
PspEI GGTNACC 1 cut(s) 827
PspGI CCWGG 2 cut(s) 709, 892
PspN4I GGNNCC 2 cut(s) 202, 809
PspPI GGNCC 1 cut(s) 609
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 202, 844
RsaNI GTAC 2 cut(s) 201, 843
SaqAI TTAA 3 cut(s) 380, 431, 900
SatI GCNGC 1 cut(s) 851
Sau3AI GATC 5 cut(s) 75, 327, 439, 741, 884
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 476, 711, 894
SduI GDGCHC 1 cut(s) 391
SexAI ACCWGGT 1 cut(s) 892
SfaNI GCATC 3 cut(s) 71, 123, 151
SfcI CTRYAG 1 cut(s) 264
SfuI TTCGAA 2 cut(s) 49, 365
SinI GGWCC 1 cut(s) 609
Sse9I AATT 7 cut(s) 270, 374, 394, 426, 563, 837, 901
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 3 cut(s) 62, 118, 171
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 474, 709, 892
StyI CCWWGG 3 cut(s) 66, 213, 854
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 766
TaqI TCGA 3 cut(s) 49, 365, 744
TasI AATT 7 cut(s) 270, 374, 394, 426, 563, 837, 901
TfiI GAWTC 2 cut(s) 248, 602
Tru1I TTAA 3 cut(s) 380, 431, 900
Tru9I TTAA 3 cut(s) 380, 431, 900
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 1 cut(s) 850
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 2 cut(s) 300, 596
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 2 cut(s) 102, 318
VpaK11BI GGWCC 1 cut(s) 609
VspI ATTAAT 1 cut(s) 900
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 2 cut(s) 270, 563
XceI RCATGY 3 cut(s) 20, 88, 296
XmiI GTMKAC 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 1 cut(s) 597
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.