pycom07g04530

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000424
Physical Location & Seq
Reverse (-)
3900842 .. 3901303
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04530.1

Sequence Viewer

Length: 462 bp
ATGCCGAACAGATTAGATATGTATCGATTCATAATTCTGACCCTTGATCTTGCTACTGAGAAGTATCGGGAGTTTGACACCCTGGTGGATGAGGATTACAGTACCGTCATGGAGTTGGAGGTTTTAGGGGGCTCTCTATGTGTTTCTGTTCATGATTGGGACACCGGAAATGATGTTTGGATTATGAAGGATTTTGGAGGACCTTGGACCCTTTTGTATTCTATTAAAAAGGAAACTATGACTTGGTTGCTTAACTATTGCCCACCTTTGGTCTTCGCAAAGAACGGTGAAATAGTTCTTTTGAAGAAGGACGAGGAAGCATTTGTTTGGTTTGATTTAAGGGGAAAAATTGGATACCAATATAATATTTGCGGTCTTCCACTTCACTTTGATGCAAAGATTTACGAGGGCAGCCTTTGTCTTATTGATGGTGATCCTGTGATTGGTGGGAGGCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

4.53

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 428
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 268, 443
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AleI CACNNNNGTG 1 cut(s) 83
AlwI GGATC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 411, 454
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 200, 207
AsuHPI GGTGA 2 cut(s) 299, 443
AvaII GGWCC 2 cut(s) 200, 207
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 265, 368
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 347
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 2 cut(s) 412, 455
BlsI GCNGC 2 cut(s) 413, 456
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 200, 207
BmgT120I GGNCC 2 cut(s) 200, 207
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 265, 368
Bsa29I ATCGAT 1 cut(s) 25
BsaBI GATNNNNATC 2 cut(s) 21, 432
BsaJI CCNNGG 2 cut(s) 81, 203
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 443
Bse8I GATNNNNATC 2 cut(s) 21, 432
BseBI CCWGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 81, 203
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 2 cut(s) 21, 432
BseLI CCNNNNNNNGG 2 cut(s) 268, 443
BseMII CTCAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 423
BshVI ATCGAT 1 cut(s) 25
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 268, 443
BsmFI GGGAC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 46, 433
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 25
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 81, 203
BssMI GATC 2 cut(s) 46, 433
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 101, 106, 287
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 49, 436
BstMBI GATC 2 cut(s) 46, 433
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 265, 368
Bsu15I ATCGAT 1 cut(s) 25
BsuI GTATCC 1 cut(s) 347
BsuTUI ATCGAT 1 cut(s) 25
BtsCI GGATG 1 cut(s) 94
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 200, 207
ClaI ATCGAT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 102
CviAII CATG 2 cut(s) 109, 152
CviJI RGCY 2 cut(s) 132, 414
CviKI_1 RGCY 2 cut(s) 132, 414
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 48, 435
DpnII GATC 2 cut(s) 46, 433
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 200, 207
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 112, 155
FaiI YATR 8 cut(s) 20, 32, 110, 139, 153, 185, 239, 363
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 108, 151
Fnu4HI GCNGC 2 cut(s) 412, 455
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 412, 455
GluI GCNGC 2 cut(s) 412, 455
HapII CCGG 1 cut(s) 165
Hin1II CATG 2 cut(s) 112, 155
HinfI GANTC 1 cut(s) 27
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 299, 443
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 68, 152
HpyAV CCTTC 2 cut(s) 181, 301
HpyCH4III ACNGT 3 cut(s) 101, 106, 287
HpyCH4V TGCA 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 2 cut(s) 112, 155
Kzo9I GATC 2 cut(s) 46, 433
LpnPI CCDG 4 cut(s) 68, 95, 178, 450
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 1 cut(s) 382
MalI GATC 2 cut(s) 48, 435
MboI GATC 2 cut(s) 46, 433
MboII GAAGA 3 cut(s) 265, 316, 368
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 2 cut(s) 33, 348
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 6 cut(s) 85, 112, 191, 307, 400, 444
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 3 cut(s) 225, 252, 338
MslI CAYNNNNRTG 2 cut(s) 83, 390
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 2 cut(s) 46, 433
NlaIII CATG 2 cut(s) 112, 155
NlaIV GGNNCC 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 83
PagI TCATGA 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 413, 456
PpuMI RGGWCCY 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 200, 207
PspPPI RGGWCCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 83, 390
SaqAI TTAA 3 cut(s) 225, 252, 338
SatI GCNGC 2 cut(s) 412, 455
Sau3AI GATC 2 cut(s) 46, 433
Sau96I GGNCC 2 cut(s) 200, 207
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 123, 205, 268
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 2 cut(s) 200, 207
SmiMI CAYNNNNRTG 2 cut(s) 83, 390
Sse9I AATT 2 cut(s) 33, 348
SsiI CCGC 1 cut(s) 372
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 3 cut(s) 101, 106, 287
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 33, 348
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 3 cut(s) 225, 252, 338
Tru9I TTAA 3 cut(s) 225, 252, 338
TseI GCWGC 2 cut(s) 411, 454
TspDTI ATGAA 3 cut(s) 19, 140, 200
VpaK11BI GGWCC 2 cut(s) 200, 207
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.