MD02G1290800.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000424
Physical Location & Seq
Reverse (-)
34657155 .. 34658057
903 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1290800.v1.1.491

Sequence Viewer

Length: 903 bp
ATGCGGGAGTTCCCACCGGAGTTACTCTTTGAAATCCTTTTGCGGCTCCCGCCTGAGGACTTGTTGCGATGTTTATGTGTTTCCAAAGCTTGGAATGCTACCATCCATGACAAAACCTTCATCAAATCCCATCTCCAACGCTCCATCCAAACCAATTCATTTGGCTCTCTTTTTGTATCTGCAACTTTTCCTTGCAATAAATGTTCGTTCAAGTTCTCTGATATTTACGACGACGGTACTATAGAACGAGCCATGAAAATCGAGCAGCCGCCACTGCAAGACGCAGAAAGCCGGACTCCTTTTCCTTCCGCGTTGGTCTCATCCAATGGGATAATTTGCATTCGCACCGGGCTGTACGAGGACGATTTTGTTTTGTGGAATCCGTCAATTCGAAAGTTCAAAAAGATTCCCTCCCCAACGTTTGAGCAGTCTCCATCACCAGATATACATGTGTACCTAGGCTATGGATTCGGGTATGATTCAACAAATGGTGACTATAAACTTTTGGGAATTGCGAATTTTAATGAGGCTGTGCATCAATGTCAAATTTATAGCCTAAAATCCAACTCATGGAGAAAGATAAGAAACATGCCTTGCGATGAGTTTCATATGATTGTAAGTCGGATCCTGTTTTCGAACGGTGCTCTAAGTTGGCTGGCACAGAACATGTTAGATAGAAAAATGCATGTTGTGACCTTTGAGCTTGCCACCGAGAAATATCACTGGTTTCCCACCCCGGTTGATGAGAATGTGCAGTTAGAGGTCTTGGGAGACTCTCAATGTATTTTTCGTCGTTTGCGCACCATGGATGCTTGGATTATGAAGGAACATGGATCTTGGACCCTGCTTTATTCTATAGAGCTGCCCCCTATGAGTAGGGTTAATCGGTGGTGTTTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

301

Amino Acids

34.74

Weight (kDa)

6.71

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 40 1.2e-09 F-box domain
F-box-like PF12937 5 - 39 3.2e-09 F-box-like
FBA_1 PF07734 80 - 281 2.1e-20 F-box associated beta propeller domain
FBA_3 PF08268 102 - 249 1.6e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 800
AccB7I CCANNNNNTGG 2 cut(s) 90, 570
AccII CGCG 1 cut(s) 311
AciI CCGC 5 cut(s) 4, 43, 50, 269, 309
AclI AACGTT 1 cut(s) 419
AclWI GGATC 3 cut(s) 619, 632, 841
AcsI RAATTY 2 cut(s) 517, 546
AfaI GTAC 3 cut(s) 238, 356, 455
AfiI CCNNNNNNNGG 3 cut(s) 55, 90, 570
AflIII ACRYGT 2 cut(s) 448, 666
AgsI TTSAA 4 cut(s) 32, 211, 400, 483
AluBI AGCT 3 cut(s) 89, 703, 862
AluI AGCT 3 cut(s) 89, 703, 862
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 322, 435, 765
AlwI GGATC 3 cut(s) 619, 632, 841
ApeKI GCWGC 2 cut(s) 265, 862
ApoI RAATTY 2 cut(s) 517, 546
AspA2I CCTAGG 1 cut(s) 457
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 1 cut(s) 840
AsuC2I CCSGG 2 cut(s) 349, 737
AsuHPI GGTGA 2 cut(s) 429, 503
AsuII TTCGAA 2 cut(s) 391, 635
AvaII GGWCC 1 cut(s) 840
AvrII CCTAGG 1 cut(s) 457
AxyI CCTNAGG 1 cut(s) 54
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BamHI GGATCC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 277, 849
BccI CCATC 4 cut(s) 110, 138, 152, 442
BcnI CCSGG 2 cut(s) 349, 737
BcoDI GTCTC 3 cut(s) 322, 435, 765
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 2 cut(s) 240, 855
BisI GCNGC 4 cut(s) 44, 266, 269, 863
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 4 cut(s) 45, 267, 270, 864
Bme1390I CCNGG 2 cut(s) 349, 737
Bme18I GGWCC 1 cut(s) 840
BmgT120I GGNCC 1 cut(s) 840
BmiI GGNNCC 3 cut(s) 47, 626, 842
BmrFI CCNGG 2 cut(s) 349, 737
BmsI GCATC 2 cut(s) 544, 799
Bpu14I TTCGAA 2 cut(s) 391, 635
BpuMI CCSGG 2 cut(s) 349, 737
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 457, 735, 804
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 90, 570
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 1 cut(s) 54
BseDI CCNNGG 3 cut(s) 457, 735, 804
BseGI GGATG 4 cut(s) 102, 144, 320, 814
BseLI CCNNNNNNNGG 3 cut(s) 55, 90, 570
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 728
BseXI GCAGC 2 cut(s) 277, 849
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 4 cut(s) 17, 292, 348, 737
BslI CCNNNNNNNGG 3 cut(s) 55, 90, 570
BsmAI GTCTC 3 cut(s) 322, 435, 765
BsmI GAATGC 2 cut(s) 100, 339
Bso31I GGTCTC 1 cut(s) 322
Bsp119I TTCGAA 2 cut(s) 391, 635
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 624, 833
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 5 cut(s) 4, 43, 50, 269, 309
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 3 cut(s) 47, 626, 842
BspPI GGATC 3 cut(s) 619, 632, 841
BspT104I TTCGAA 2 cut(s) 391, 635
BspTNI GGTCTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 728
BssECI CCNNGG 3 cut(s) 457, 735, 804
BssMI GATC 2 cut(s) 624, 833
BssT1I CCWWGG 2 cut(s) 457, 804
Bst4CI ACNGT 2 cut(s) 236, 641
BstBI TTCGAA 2 cut(s) 391, 635
BstC8I GCNNGC 2 cut(s) 657, 705
BstDEI CTNAG 2 cut(s) 54, 647
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 4 cut(s) 102, 144, 320, 814
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 2 cut(s) 627, 836
BstMAI GTCTC 3 cut(s) 322, 435, 765
BstMBI GATC 2 cut(s) 624, 833
BstMWI GCNNNNNNNGC 3 cut(s) 49, 95, 274
BstNSI RCATGY 4 cut(s) 452, 592, 670, 689
BstSCI CCNGG 2 cut(s) 347, 735
BstSFI CTRYAG 2 cut(s) 240, 855
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 277, 849
BstX2I RGATCY 2 cut(s) 624, 833
BstYI RGATCY 2 cut(s) 624, 833
Bsu36I CCTNAGG 1 cut(s) 54
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 2 cut(s) 82, 612
BtsCI GGATG 4 cut(s) 102, 144, 320, 814
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 2 cut(s) 272, 721
Cac8I GCNNGC 2 cut(s) 657, 705
CfoI GCGC 1 cut(s) 801
Cfr13I GGNCC 1 cut(s) 840
CseI GACGC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 237, 355, 454
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 9 cut(s) 107, 253, 449, 570, 589, 667, 686, 805, 830
CviQI GTAC 3 cut(s) 237, 355, 454
DdeI CTNAG 2 cut(s) 54, 647
DpnI GATC 2 cut(s) 626, 835
DpnII GATC 2 cut(s) 624, 833
Eco130I CCWWGG 2 cut(s) 457, 804
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 840
Eco81I CCTNAGG 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 457, 804
EcoT22I ATGCAT 1 cut(s) 687
ErhI CCWWGG 2 cut(s) 457, 804
FaeI CATG 9 cut(s) 110, 256, 452, 573, 592, 670, 689, 808, 833
FatI CATG 9 cut(s) 106, 252, 448, 569, 588, 666, 685, 804, 829
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 44, 266, 269, 863
FokI GGATG 4 cut(s) 89, 131, 307, 821
Fsp4HI GCNGC 4 cut(s) 44, 266, 269, 863
FspBI CTAG 1 cut(s) 458
FspI TGCGCA 1 cut(s) 800
GlaI GCGC 1 cut(s) 800
GluI GCNGC 4 cut(s) 44, 266, 269, 863
HapII CCGG 4 cut(s) 17, 292, 348, 737
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 801
Hin1II CATG 9 cut(s) 110, 256, 452, 573, 592, 670, 689, 808, 833
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 6 cut(s) 295, 379, 406, 468, 479, 773
HpaII CCGG 4 cut(s) 17, 292, 348, 737
HphI GGTGA 2 cut(s) 429, 503
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 220, 624
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 3 cut(s) 233, 236, 795
HpyAV CCTTC 3 cut(s) 127, 315, 817
HpyCH4III ACNGT 2 cut(s) 236, 641
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 7 cut(s) 182, 195, 277, 339, 535, 685, 754
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 95, 274
HpyF3I CTNAG 2 cut(s) 54, 647
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 9 cut(s) 110, 256, 452, 573, 592, 670, 689, 808, 833
HspAI GCGC 1 cut(s) 799
Kzo9I GATC 2 cut(s) 624, 833
LmnI GCTCC 2 cut(s) 51, 146
Lsp1109I GCAGC 2 cut(s) 277, 849
LweI GCATC 2 cut(s) 544, 799
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 3 cut(s) 21, 491, 691
MalI GATC 2 cut(s) 626, 835
MboI GATC 2 cut(s) 624, 833
MflI RGATCY 2 cut(s) 624, 833
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 6 cut(s) 154, 333, 387, 510, 517, 546
MlyI GAGTC 2 cut(s) 289, 767
MmeI TCCRAC 3 cut(s) 160, 588, 602
MnlI CCTC 5 cut(s) 49, 352, 421, 520, 754
Mph1103I ATGCAT 1 cut(s) 687
MseI TTAA 2 cut(s) 522, 882
MspI CCGG 4 cut(s) 17, 292, 348, 737
MspR9I CCNGG 2 cut(s) 349, 737
Mva1269I GAATGC 2 cut(s) 100, 339
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 49, 95, 274
NciI CCSGG 2 cut(s) 349, 737
NcoI CCATGG 1 cut(s) 804
NdeI CATATG 1 cut(s) 609
NdeII GATC 2 cut(s) 624, 833
NlaIII CATG 9 cut(s) 110, 256, 452, 573, 592, 670, 689, 808, 833
NlaIV GGNNCC 3 cut(s) 47, 626, 842
NmuCI GTSAC 2 cut(s) 491, 691
NsbI TGCGCA 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 687
NspI RCATGY 4 cut(s) 452, 592, 670, 689
NspV TTCGAA 2 cut(s) 391, 635
PciI ACATGT 2 cut(s) 448, 666
PctI GAATGC 2 cut(s) 100, 339
PfeI GAWTC 4 cut(s) 379, 406, 468, 479
PflMI CCANNNNNTGG 2 cut(s) 90, 570
PkrI GCNGC 4 cut(s) 45, 267, 270, 864
PleI GAGTC 2 cut(s) 289, 767
PpsI GAGTC 2 cut(s) 289, 767
PscI ACATGT 2 cut(s) 448, 666
Psp1406I AACGTT 1 cut(s) 419
PspN4I GGNNCC 3 cut(s) 47, 626, 842
PspPI GGNCC 1 cut(s) 840
PsuI RGATCY 2 cut(s) 624, 833
RsaI GTAC 3 cut(s) 238, 356, 455
RsaNI GTAC 3 cut(s) 237, 355, 454
SaqAI TTAA 2 cut(s) 522, 882
SatI GCNGC 4 cut(s) 44, 266, 269, 863
Sau3AI GATC 2 cut(s) 624, 833
Sau96I GGNCC 1 cut(s) 840
SchI GAGTC 2 cut(s) 289, 767
ScrFI CCNGG 2 cut(s) 349, 737
SduI GDGCHC 1 cut(s) 646
SetI ASST 8 cut(s) 91, 119, 422, 459, 698, 705, 765, 864
SfaNI GCATC 2 cut(s) 544, 799
SfcI CTRYAG 2 cut(s) 240, 855
SfuI TTCGAA 2 cut(s) 391, 635
SinI GGWCC 1 cut(s) 840
Sse9I AATT 6 cut(s) 154, 333, 387, 510, 517, 546
SsiI CCGC 5 cut(s) 4, 43, 50, 269, 309
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 347, 735
StyI CCWWGG 2 cut(s) 457, 804
TaaI ACNGT 2 cut(s) 236, 641
TaiI ACGT 1 cut(s) 422
TaqI TCGA 3 cut(s) 261, 391, 635
TasI AATT 6 cut(s) 154, 333, 387, 510, 517, 546
TauI GCSGC 2 cut(s) 46, 271
TfiI GAWTC 4 cut(s) 379, 406, 468, 479
Tru1I TTAA 2 cut(s) 522, 882
Tru9I TTAA 2 cut(s) 522, 882
TscAI CASTG 2 cut(s) 279, 728
TseFI GTSAC 2 cut(s) 491, 691
TseI GCWGC 2 cut(s) 265, 862
Tsp45I GTSAC 2 cut(s) 491, 691
TspDTI ATGAA 5 cut(s) 109, 147, 269, 596, 836
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 2 cut(s) 279, 728
Van91I CCANNNNNTGG 2 cut(s) 90, 570
VpaK11BI GGWCC 1 cut(s) 840
XapI RAATTY 2 cut(s) 517, 546
XceI RCATGY 4 cut(s) 452, 592, 670, 689
XmaJI CCTAGG 1 cut(s) 457
XspI CTAG 1 cut(s) 458
Zsp2I ATGCAT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.