Rh6BG368600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000424
Physical Location & Seq
Forward (+)
59832448 .. 59832786
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG368600.1

Sequence Viewer

Length: 339 bp
ATGAACGAATATGGAGTGGCTGAATCTTGGGTTCATTTCTATACTGTAAAGCAGGAGGTTGTGGAAAACGCGTTTGAGTATTGCACACCTTTGGTCTTATCAAAGACTGGTGAAAGGGTTCTTTTGCATAACGACTCTGATTTGACCGAGGGTTTCCTTTTCTGGTATGATTTGGAGAAAAACACTGGAAAAGTGGTTACAATTTCTGGTTTGCCCCTCCACTTTAGGGCAGCTATCTGTGTAGCCAACCTTGGTCTCCTTGTTGATCCAGTGAACTTTGCAAGGCAGCAACAAGTCCTTCCTGTAAAGAAGAAATATTCAAGCAGGCAAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

112

Amino Acids

12.78

Weight (kDa)

6.27

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 321
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 230, 286
ApoI RAATTY 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 2 cut(s) 242, 298
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 2 cut(s) 231, 287
BlsI GCNGC 2 cut(s) 232, 288
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 147, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 112, 190, 269
BseDI CCNNGG 2 cut(s) 147, 250
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 3 cut(s) 112, 190, 269
BseXI GCAGC 2 cut(s) 242, 298
Bsh1236I CGCG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 265
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 3 cut(s) 112, 190, 269
BssECI CCNNGG 2 cut(s) 147, 250
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 326
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 265
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 242, 298
BtsIMutI CAGTG 2 cut(s) 183, 276
Cac8I GCNNGC 1 cut(s) 326
CviJI RGCY 3 cut(s) 20, 233, 245
CviKI_1 RGCY 3 cut(s) 20, 233, 245
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaiI YATR 4 cut(s) 12, 42, 129, 168
Fnu4HI GCNGC 2 cut(s) 231, 287
Fsp4HI GCNGC 2 cut(s) 231, 287
GluI GCNGC 2 cut(s) 231, 287
HinfI GANTC 2 cut(s) 23, 134
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 84, 127, 281
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 38, 93, 148, 171, 192, 282, 310, 315
Lsp1109I GCAGC 2 cut(s) 242, 298
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 322
MluCI AATT 2 cut(s) 201, 330
MluI ACGCGT 1 cut(s) 69
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 3 cut(s) 49, 142, 227
MroXI GAANNNNTTC 1 cut(s) 117
MvnI CGCG 1 cut(s) 71
NdeII GATC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 232, 288
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 231, 287
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 1 cut(s) 128
SetI ASST 4 cut(s) 60, 91, 235, 252
Sse9I AATT 2 cut(s) 201, 330
SspI AATATT 1 cut(s) 317
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 46
TaqII GACCGA 1 cut(s) 161
TasI AATT 2 cut(s) 201, 330
TfiI GAWTC 1 cut(s) 23
TscAI CASTG 2 cut(s) 190, 276
TseI GCWGC 2 cut(s) 230, 286
TspDTI ATGAA 2 cut(s) 17, 23
TspRI CASTG 2 cut(s) 190, 276
XapI RAATTY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.