pycom16g17140

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
13227382 .. 13228487
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17140.2

Sequence Viewer

Length: 1035 bp
ATGAGTTCAAAACCCAAAACCCAGAAGAAGAAAACCATGTCAGAGTCAGACTTCCCACCGGAGATACCGTTCGACATCCTTTCTCGCCTTCCGCCCAAGGATTTGATTCGATTCCTCTGCGTTTCCAAATCTTGGTATGTCGTCATCCACGACCATCACTTCATCAAAGCTCATCTCCAACGCTCCATCCAAACCAATTCTGCTCGCACCCTTTTACTCCGATCAAATTCCGCTATTTGGTCAGATTTCTATTCACTGCCCTTCAACGGCAACAAAGTGTTCGGGACACTTGTGCTAATTGAGCAGCCCTTGAAATGCCCTGGCGACTACCCTGAGATGTTGGGATGCTCAGTTAATGGTGTGGTTTGTATTCACGACGGTGAATGTACAGATGTTTGTTTATGGAACATGTCGATTCAAAAGTTCAAGAAGATTCCCCTCCCAACGTTGGAGCATCAGCCACCGTCATATTTCAGCAGGTACACTCTCTTCGGGTTCGCGTACGATTCAGCTAATCATGACTTTAAAGTTTTGCGAATTACGCAGTTTGAGAACAGAAAGAGAGAGTCTGTGGGTTCCCAAGTCGGTGTTTATAGTCTAAAATCGAACTCATGGAAAAAGATCCAAAGCTTGTCTTATAACAATCGATGCATAATTCTAACCCTTGATCTTGCCAGTGAGAATTATCGGGAGTTCCACACCCCAGTGGACGAGGATGACAATTGTACTATGAATTTGGTGGTTTTAAAGGGCTCTCTATGTGTTCTTGTTAATAATAGGAGCAGTAGACATGAAGTTTGGATTATGAAGGAGTATGGAATGTCCGACTCTTGGACCTTGCTTTATTCTATTGTTCCGGAAACTGTGCCTTGGTGGTTTGGTTATTGTGACCCTTTGGGGTTCTCAAAGAACGGTGAAATGGTTCTTTTGCAGAACGGTGAGGGTACGTTTGTTTGGTTTGATTTAGAGCAGAAAAATGTAACGAAGTTGACAATGGTGGTCTGCTACTCGTTTTTAAAGCAACCCTTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

345

Amino Acids

39.67

Weight (kDa)

8.21

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 468
AccB7I CCANNNNNTGG 1 cut(s) 132
AccI GTMKAC 1 cut(s) 787
AccII CGCG 1 cut(s) 500
AccIII TCCGGA 1 cut(s) 856
AciI CCGC 2 cut(s) 92, 231
AclI AACGTT 1 cut(s) 446
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 2 cut(s) 226, 733
AfaI GTAC 5 cut(s) 388, 482, 503, 727, 946
AfiI CCNNNNNNNGG 5 cut(s) 132, 237, 266, 448, 831
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 5 cut(s) 9, 265, 313, 419, 427
AjnI CCWGG 1 cut(s) 319
AleI CACNNNNGTG 2 cut(s) 378, 704
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 170, 512, 630
AluI AGCT 3 cut(s) 170, 512, 630
AlwI GGATC 1 cut(s) 616
Aor13HI TCCGGA 1 cut(s) 856
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 2 cut(s) 226, 733
ArsI GACNNNNNNTTYG 2 cut(s) 780, 812
Asp700I GAANNNNTTC 1 cut(s) 921
AspS9I GGNCC 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 392, 926, 950
AvaII GGWCC 1 cut(s) 834
BaeI ACNNNNGTAYC 2 cut(s) 936, 969
BanII GRGCYC 1 cut(s) 755
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BbvI GCAGC 1 cut(s) 316
BccI CCATC 2 cut(s) 162, 194
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 468
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 834
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 3 cut(s) 335, 463, 638
BmuI ACTGGG 1 cut(s) 698
Bsa29I ATCGAT 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 96, 319, 869
BsaWI WCCGGW 2 cut(s) 58, 856
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 237, 266, 448, 831
Bse1I ACTGG 2 cut(s) 675, 704
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 3 cut(s) 96, 319, 869
BseGI GGATG 5 cut(s) 75, 144, 186, 350, 721
BseLI CCNNNNNNNGG 5 cut(s) 132, 237, 266, 448, 831
BseMII CTCAG 2 cut(s) 324, 363
BseNI ACTGG 2 cut(s) 675, 704
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 500
BshVI ATCGAT 1 cut(s) 646
BsiSI CCGG 2 cut(s) 59, 857
BsiWI CGTACG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 132, 237, 266, 448, 831
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 755
Bsp13I TCCGGA 1 cut(s) 856
Bsp1407I TGTACA 1 cut(s) 386
Bsp143I GATC 3 cut(s) 221, 621, 667
BspACI CCGC 2 cut(s) 92, 231
BspCNI CTCAG 2 cut(s) 325, 362
BspDI ATCGAT 1 cut(s) 646
BspEI TCCGGA 1 cut(s) 856
BspFNI CGCG 1 cut(s) 500
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 468
BspPI GGATC 1 cut(s) 616
BsrGI TGTACA 1 cut(s) 386
BsrI ACTGG 2 cut(s) 675, 704
BssECI CCNNGG 3 cut(s) 96, 319, 869
BssMI GATC 3 cut(s) 221, 621, 667
BssT1I CCWWGG 2 cut(s) 96, 869
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 6 cut(s) 69, 380, 465, 865, 914, 938
Bst6I CTCTTC 1 cut(s) 494
BstAUI TGTACA 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 333, 349, 1032
BstF5I GGATG 5 cut(s) 75, 144, 186, 350, 721
BstFNI CGCG 1 cut(s) 500
BstKTI GATC 3 cut(s) 224, 624, 670
BstMBI GATC 3 cut(s) 221, 621, 667
BstMWI GCNNNNNNNGC 2 cut(s) 301, 541
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 646
BtsCI GGATG 5 cut(s) 75, 144, 186, 350, 721
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 3 cut(s) 254, 682, 711
BveI ACCTGC 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 205
CciI TCATGA 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 834
ClaI ATCGAT 1 cut(s) 646
Csp6I GTAC 5 cut(s) 387, 481, 502, 726, 945
CviAII CATG 5 cut(s) 37, 409, 518, 612, 791
CviJI RGCY 6 cut(s) 170, 307, 460, 512, 630, 753
CviKI_1 RGCY 6 cut(s) 170, 307, 460, 512, 630, 753
CviQI GTAC 5 cut(s) 387, 481, 502, 726, 945
DdeI CTNAG 3 cut(s) 333, 349, 1032
DpnI GATC 3 cut(s) 223, 623, 669
DpnII GATC 3 cut(s) 221, 621, 667
DraI TTTAAA 3 cut(s) 526, 747, 1017
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 96, 869
Eco24I GRGCYC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 96, 869
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 755
ErhI CCWWGG 2 cut(s) 96, 869
FaeI CATG 5 cut(s) 40, 412, 521, 615, 794
FalI AAGNNNNNCTT 3 cut(s) 619, 651, 1010
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 36, 408, 517, 611, 790
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 5 cut(s) 62, 131, 173, 357, 728
FriOI GRGCYC 1 cut(s) 755
Fsp4HI GCNGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 305
HapII CCGG 2 cut(s) 59, 857
Hin1II CATG 5 cut(s) 40, 412, 521, 615, 794
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 8 cut(s) 44, 106, 111, 415, 433, 506, 566, 827
HpaII CCGG 2 cut(s) 59, 857
HphI GGTGA 3 cut(s) 392, 926, 950
Hpy166II GTNNAC 4 cut(s) 483, 709, 788, 990
Hpy188I TCNGA 5 cut(s) 43, 49, 221, 244, 826
Hpy188III TCNNGA 6 cut(s) 283, 374, 427, 518, 689, 857
Hpy8I GTNNAC 4 cut(s) 483, 709, 788, 990
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 98, 271, 802
HpyCH4III ACNGT 6 cut(s) 69, 380, 465, 865, 914, 938
HpyCH4IV ACGT 2 cut(s) 446, 947
HpyCH4V TGCA 2 cut(s) 651, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 541
HpyF3I CTNAG 3 cut(s) 333, 349, 1032
HpySE526I ACGT 2 cut(s) 446, 947
Hsp92II CATG 5 cut(s) 40, 412, 521, 615, 794
Kpn2I TCCGGA 1 cut(s) 856
Kzo9I GATC 3 cut(s) 221, 621, 667
LmnI GCTCC 3 cut(s) 188, 451, 780
LpnPI CCDG 9 cut(s) 35, 72, 306, 333, 345, 463, 688, 717, 870
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 3 cut(s) 335, 463, 638
MaeII ACGT 2 cut(s) 446, 947
MaeIII GTNAC 2 cut(s) 887, 979
MalI GATC 3 cut(s) 223, 623, 669
MboI GATC 3 cut(s) 221, 621, 667
MboII GAAGA 4 cut(s) 37, 40, 442, 481
MfeI CAATTG 1 cut(s) 721
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 755
MluCI AATT 8 cut(s) 196, 226, 297, 537, 654, 682, 721, 733
MlyI GAGTC 3 cut(s) 53, 575, 821
MmeI TCCRAC 3 cut(s) 202, 429, 849
MnlI CCTC 4 cut(s) 125, 449, 706, 934
Mph1103I ATGCAT 1 cut(s) 653
MroI TCCGGA 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 5 cut(s) 354, 525, 746, 771, 1016
MslI CAYNNNNRTG 2 cut(s) 378, 704
MspI CCGG 2 cut(s) 59, 857
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 721
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 2 cut(s) 301, 541
NdeII GATC 3 cut(s) 221, 621, 667
NlaIII CATG 5 cut(s) 40, 412, 521, 615, 794
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 653
NspI RCATGY 1 cut(s) 412
OliI CACNNNNGTG 2 cut(s) 378, 704
PagI TCATGA 1 cut(s) 517
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 5 cut(s) 106, 111, 415, 433, 506
Pfl23II CGTACG 1 cut(s) 501
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 3 cut(s) 52, 574, 821
PpsI GAGTC 3 cut(s) 52, 574, 821
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 639
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspLI CGTACG 1 cut(s) 501
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 834
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 5 cut(s) 388, 482, 503, 727, 946
RsaNI GTAC 5 cut(s) 387, 481, 502, 726, 945
RseI CAYNNNNRTG 2 cut(s) 378, 704
SaqAI TTAA 5 cut(s) 354, 525, 746, 771, 1016
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 3 cut(s) 221, 621, 667
Sau96I GGNCC 1 cut(s) 834
SchI GAGTC 3 cut(s) 53, 575, 821
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 755
SetI ASST 7 cut(s) 172, 449, 482, 514, 632, 839, 950
SfaNI GCATC 3 cut(s) 335, 463, 638
SinI GGWCC 1 cut(s) 834
SmiMI CAYNNNNRTG 2 cut(s) 378, 704
Sse9I AATT 8 cut(s) 196, 226, 297, 537, 654, 682, 721, 733
SsiI CCGC 2 cut(s) 92, 231
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 96, 869
TaaI ACNGT 6 cut(s) 69, 380, 465, 865, 914, 938
TaiI ACGT 2 cut(s) 449, 950
TaqI TCGA 5 cut(s) 72, 109, 413, 605, 646
TasI AATT 8 cut(s) 196, 226, 297, 537, 654, 682, 721, 733
TatI WGTACW 2 cut(s) 386, 725
TfiI GAWTC 5 cut(s) 106, 111, 415, 433, 506
Tru1I TTAA 5 cut(s) 354, 525, 746, 771, 1016
Tru9I TTAA 5 cut(s) 354, 525, 746, 771, 1016
TscAI CASTG 3 cut(s) 261, 682, 711
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 4 cut(s) 151, 746, 807, 821
TspRI CASTG 3 cut(s) 261, 682, 711
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 834
XapI RAATTY 2 cut(s) 226, 733
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 787
XmnI GAANNNNTTC 1 cut(s) 921
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.