Rorug02G0541400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000424
Physical Location & Seq
Forward (+)
67121195 .. 67123460
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0541400.1

Sequence Viewer

Length: 270 bp
ATGTGTGCAACAAGAGAAGCTTGGATTGTGGCAGTGAGTGTAGGAGCTGTTCAGGCCATGAAAGATCAAGGCTTTTGCAGGTGGGGTTACACCATGAGGTCTATTAACCAACATGCCAAGACCAATATGAGATCCTTCCTCCTGCAAGCCCAGAAGCTCCCTTCTTCGTTTTCTGCTGCGGTTTTCACCAAAATGAATTCGGAAAAGAAGAATCAATCCGAGGAATCCCTAAGAAAAGTCATGTACCTGAGCTGTTGGGGTCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

89

Amino Acids

10.15

Weight (kDa)

9.72

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 88 4.2e-32 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 69
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 245
AluBI AGCT 4 cut(s) 20, 47, 157, 252
AluI AGCT 4 cut(s) 20, 47, 157, 252
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 69
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 56
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 64, 131
BspACI CCGC 1 cut(s) 179
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 64, 131
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 230, 248
BstKTI GATC 2 cut(s) 67, 134
BstMBI GATC 2 cut(s) 64, 131
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 58, 94, 113, 241
CviJI RGCY 7 cut(s) 20, 47, 56, 72, 149, 157, 252
CviKI_1 RGCY 7 cut(s) 20, 47, 56, 72, 149, 157, 252
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 230, 248
DpnI GATC 2 cut(s) 66, 133
DpnII GATC 2 cut(s) 64, 131
Eco47I GGWCC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 196
FaeI CATG 4 cut(s) 61, 97, 116, 244
FaiI YATR 5 cut(s) 59, 95, 114, 128, 242
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 4 cut(s) 57, 93, 112, 240
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 4 cut(s) 61, 97, 116, 244
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 211, 224
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 202, 220
HpyAV CCTTC 2 cut(s) 145, 171
HpyCH4V TGCA 3 cut(s) 8, 78, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 230, 248
Hsp92II CATG 4 cut(s) 61, 97, 116, 244
Kzo9I GATC 2 cut(s) 64, 131
LmnI GCTCC 2 cut(s) 44, 162
LpnPI CCDG 5 cut(s) 38, 64, 155, 164, 260
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 66, 133
MboI GATC 2 cut(s) 64, 131
MboII GAAGA 2 cut(s) 156, 220
MflI RGATCY 1 cut(s) 131
MluCI AATT 1 cut(s) 196
MnlI CCTC 3 cut(s) 90, 149, 214
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 64, 131
NlaIII CATG 4 cut(s) 61, 97, 116, 244
NlaIV GGNNCC 1 cut(s) 261
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 211, 224
PkrI GCNGC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 33, 65
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 64, 131
Sau96I GGNCC 1 cut(s) 260
SetI ASST 7 cut(s) 22, 49, 83, 101, 159, 249, 254
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 179
TasI AATT 1 cut(s) 196
TfiI GAWTC 2 cut(s) 211, 224
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 74, 209
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.