pycom07g04540

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000424
Physical Location & Seq
Reverse (-)
3901455 .. 3901907
453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04540.1

Sequence Viewer

Length: 453 bp
ATGTCAGACTTCCCACCGGTGCTACTGATCGACATCCTATCAAGGCTTCCTCTGCGTTTCCAAAGGTTGGAATGCTATCATCCGCCACCACCACTTCATCGAAGCTCATCTTCAACGCTCCATCCAAACCAGTTTCTTTCGCACCATTTTAGTCAGGTCAATGGATTCCCCCTCATCAGATTTTTTTTCATCGGCTTTCGACGGCAGCGAAACGTTCCGGTCCGGTCAGCCGTTAAAATTGAGCGGCCGTTGAAATCCCCTGAGAGGTATCAGTTACTAGGGTGCTCGATTCATGGAGTGGTTTGCATTTGCAATAGTCTCCGTACGAATGTCGCTTTGTGGAACCCATCAATTCAAAAGTTTAAGACGATTCCCCTCCCAGCCATTGAGCAGCAGCAGCCATCATCAAAGTTACATATATCCCTAGGGTTCGGGTATGATTCAGTTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

10.23

Isoelectric Point (pI)

72.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 244
AciI CCGC 2 cut(s) 83, 244
AclI AACGTT 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 245
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 67, 264
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 114, 253, 356
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 323
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 4 cut(s) 205, 391, 394, 397
AsiGI ACCGGT 1 cut(s) 16
AspA2I CCTAGG 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
AvrII CCTAGG 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 217, 403, 406, 409
BccI CCATC 3 cut(s) 129, 355, 409
BceAI ACGGC 3 cut(s) 215, 218, 232
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 2 cut(s) 278, 425
BisI GCNGC 5 cut(s) 206, 245, 392, 395, 398
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 5 cut(s) 207, 246, 393, 396, 399
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 424
BsaWI WCCGGW 3 cut(s) 16, 217, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 264
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 3 cut(s) 33, 79, 121
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 67, 264
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 130
BseX3I CGGCCG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 217, 403, 406, 409
BseYI CCCAGC 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 247
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 3 cut(s) 17, 218, 223
BsiWI CGTACG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 67, 264
BsmAI GTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 2 cut(s) 83, 244
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 424
BstDEI CTNAG 2 cut(s) 261, 450
BstF5I GGATG 3 cut(s) 33, 79, 121
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 52, 397
BstV1I GCAGC 4 cut(s) 217, 403, 406, 409
BstZI CGGCCG 1 cut(s) 245
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 3 cut(s) 33, 79, 121
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 220
CpoI CGGWCCG 1 cut(s) 220
Csp6I GTAC 1 cut(s) 324
CspAI ACCGGT 1 cut(s) 16
CspI CGGWCCG 1 cut(s) 220
CviAII CATG 1 cut(s) 293
CviJI RGCY 7 cut(s) 46, 105, 195, 230, 247, 383, 400
CviKI_1 RGCY 7 cut(s) 46, 105, 195, 230, 247, 383, 400
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 261, 450
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 245
EagI CGGCCG 1 cut(s) 245
EciI GGCGGA 1 cut(s) 72
EclXI CGGCCG 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 220
Eco52I CGGCCG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 296
FaiI YATR 4 cut(s) 294, 417, 419, 438
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 5 cut(s) 206, 245, 392, 395, 398
FokI GGATG 3 cut(s) 20, 66, 108
Fsp4HI GCNGC 5 cut(s) 206, 245, 392, 395, 398
FspBI CTAG 2 cut(s) 278, 425
GluI GCNGC 5 cut(s) 206, 245, 392, 395, 398
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 17, 218, 223
Hin1II CATG 1 cut(s) 296
HinfI GANTC 4 cut(s) 165, 289, 370, 440
HpaII CCGG 3 cut(s) 17, 218, 223
Hpy188I TCNGA 2 cut(s) 7, 179
Hpy99I CGWCG 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 306, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 397
HpyF3I CTNAG 2 cut(s) 261, 450
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 7 cut(s) 30, 140, 143, 231, 236, 273, 393
Lsp1109I GCAGC 4 cut(s) 217, 403, 406, 409
MaeI CTAG 2 cut(s) 278, 425
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 273, 411, 445
MalI GATC 1 cut(s) 29
MbiI CCGCTC 1 cut(s) 244
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 237, 351
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 4 cut(s) 60, 182, 258, 386
MseI TTAA 2 cut(s) 234, 363
MspI CCGG 3 cut(s) 17, 218, 223
Mva1269I GAATGC 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 52, 397
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PctI GAATGC 1 cut(s) 77
PfeI GAWTC 4 cut(s) 165, 289, 370, 440
Pfl23II CGTACG 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 67
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 5 cut(s) 207, 246, 393, 396, 399
Psp1406I AACGTT 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 379
PspLI CGTACG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
Rsr2I CGGWCCG 1 cut(s) 220
RsrII CGGWCCG 1 cut(s) 220
SaqAI TTAA 2 cut(s) 234, 363
SatI GCNGC 5 cut(s) 206, 245, 392, 395, 398
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 287
SetI ASST 5 cut(s) 68, 107, 159, 216, 269
SgrAI CRCCGGYG 1 cut(s) 16
SinI GGWCC 1 cut(s) 220
Sse9I AATT 2 cut(s) 237, 351
SsiI CCGC 2 cut(s) 83, 244
SspMI CTAG 2 cut(s) 278, 425
StyI CCWWGG 1 cut(s) 424
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 30, 100, 199, 287
TasI AATT 2 cut(s) 237, 351
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 165, 289, 370, 440
Tru1I TTAA 2 cut(s) 234, 363
Tru9I TTAA 2 cut(s) 234, 363
TseI GCWGC 4 cut(s) 205, 391, 394, 397
TspDTI ATGAA 3 cut(s) 86, 178, 281
TspGWI ACGGA 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 424
XspI CTAG 2 cut(s) 278, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.