Rorug06G0429600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000424
Physical Location & Seq
Forward (+)
56542179 .. 56544366
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0429600.1

Sequence Viewer

Length: 936 bp
ATGCCTTTACCCCTAAAAGACTTTACCTTTTTGGTCCCAATTTCTGATACCCACCGTGAAACCCTAAAGATGGCCTCCGACGACGACGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGCGGCAATAGCCAAGCCGAAGGTGAAGAAAGAAGAGCTCGATAACGGTTCTGATAGCCCAAAGCCCAAGCCCAGAAACCCAATTGTGAAAAAGCAAGAGAAGCAGAACCAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGACGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCTAAGGCCGATAAGAATGTGAAGAGAAAGAGAGAAGAGGCGGCGGCGGCGGCGACACCGGAGAAGAAGAGGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTGAAGAGAGAGACCCACTTCGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGGCTGATGGAGTCAGGTTTGCTACCTAAAGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAATAGTCGTCACCTTCAAAAAATCAGTTCTCCAATTAAAGCTTTAGCTTCTGGAAGGAAGACCACAACAGTCAGTACTACAAGTAGAGGTGGATCTTCTGTAAAGAAGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCAGCCTCCAAGGGCGCATCAAATCTGTCTAAGAAGCGGAAGAAAGATGATGAAAGCTCAGACAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

311

Amino Acids

34.74

Weight (kDa)

9.77

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 112, 146, 416, 419, 422, 425, 850
AclWI GGATC 2 cut(s) 103, 733
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 650
AhdI GACNNNNNGTC 2 cut(s) 91, 880
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 8 cut(s) 181, 359, 369, 544, 674, 680, 870, 932
AluI AGCT 8 cut(s) 181, 359, 369, 544, 674, 680, 870, 932
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 4 cut(s) 480, 498, 521, 904
AlwI GGATC 2 cut(s) 103, 733
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 72, 381
ApeKI GCWGC 3 cut(s) 143, 541, 929
AspLEI GCGC 1 cut(s) 830
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 178, 635
AvaII GGWCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 3 cut(s) 327, 698, 746
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 155, 553
BccI CCATC 2 cut(s) 64, 571
BcgI CGANNNNNNTGC 2 cut(s) 620, 654
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 4 cut(s) 480, 498, 521, 904
BfaI CTAG 1 cut(s) 356
BisI GCNGC 8 cut(s) 144, 147, 417, 420, 423, 426, 542, 930
BlsI GCNGC 8 cut(s) 145, 148, 418, 421, 424, 427, 543, 931
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 2 cut(s) 474, 785
Bme18I GGWCC 1 cut(s) 34
BmeRI GACNNNNNGTC 2 cut(s) 91, 880
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 474, 785
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 839
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 3 cut(s) 327, 698, 746
BplI GAGNNNNNCTC 2 cut(s) 475, 507
BpuMI CCSGG 1 cut(s) 785
BsaI GGTCTC 2 cut(s) 498, 904
BsaJI CCNNGG 2 cut(s) 783, 822
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 783, 822
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 460, 617
BseXI GCAGC 2 cut(s) 155, 553
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 74, 383
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 434, 785
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 4 cut(s) 480, 498, 521, 904
BsmBI CGTCTC 2 cut(s) 480, 521
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 74, 383
Bso31I GGTCTC 2 cut(s) 498, 904
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 108, 725
BspACI CCGC 7 cut(s) 112, 146, 416, 419, 422, 425, 850
BspANI GGCC 2 cut(s) 74, 383
BspCNI CTCAG 1 cut(s) 884
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 103, 733
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 2 cut(s) 498, 904
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 783, 822
BssMI GATC 2 cut(s) 108, 725
BssT1I CCWWGG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 4 cut(s) 56, 191, 703, 760
Bst6I CTCTTC 6 cut(s) 171, 392, 405, 437, 476, 492
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 5 cut(s) 360, 378, 843, 871, 933
BstHHI GCGC 1 cut(s) 830
BstKTI GATC 2 cut(s) 111, 728
BstMAI GTCTC 4 cut(s) 480, 498, 521, 904
BstMBI GATC 2 cut(s) 108, 725
BstMWI GCNNNNNNNGC 6 cut(s) 152, 244, 422, 425, 538, 876
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 472, 783
BstV1I GCAGC 2 cut(s) 155, 553
BstV2I GAAGAC 3 cut(s) 327, 698, 746
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
BsuRI GGCC 2 cut(s) 74, 383
BtgZI GCGATG 2 cut(s) 273, 354
Cac8I GCNNGC 1 cut(s) 927
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 1 cut(s) 830
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 2 cut(s) 497, 538
Csp6I GTAC 1 cut(s) 708
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 5 cut(s) 360, 378, 843, 871, 933
DpnI GATC 2 cut(s) 110, 727
DpnII GATC 2 cut(s) 108, 725
DriI GACNNNNNGTC 2 cut(s) 91, 880
Eam1104I CTCTTC 6 cut(s) 171, 392, 405, 437, 476, 492
Eam1105I GACNNNNNGTC 2 cut(s) 91, 880
EarI CTCTTC 6 cut(s) 171, 392, 405, 437, 476, 492
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 2 cut(s) 498, 904
Eco32I GATATC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 516
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 903
EcoT14I CCWWGG 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 822
Esp3I CGTCTC 2 cut(s) 480, 521
FaiI YATR 2 cut(s) 465, 537
FaqI GGGAC 1 cut(s) 20
Fnu4HI GCNGC 8 cut(s) 144, 147, 417, 420, 423, 426, 542, 930
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 8 cut(s) 144, 147, 417, 420, 423, 426, 542, 930
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 829
GluI GCNGC 8 cut(s) 144, 147, 417, 420, 423, 426, 542, 930
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 74, 383
HapII CCGG 2 cut(s) 434, 785
HgaI GACGC 2 cut(s) 497, 538
HhaI GCGC 1 cut(s) 830
Hin6I GCGC 1 cut(s) 828
HinP1I GCGC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 2 cut(s) 581, 881
HpaII CCGG 2 cut(s) 434, 785
HphI GGTGA 2 cut(s) 178, 635
Hpy188I TCNGA 8 cut(s) 46, 79, 196, 480, 516, 874, 886, 907
Hpy188III TCNNGA 3 cut(s) 494, 684, 763
Hpy99I CGWCG 3 cut(s) 83, 86, 89
HpyAV CCTTC 5 cut(s) 157, 310, 451, 656, 681
HpyCH4III ACNGT 4 cut(s) 56, 191, 703, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 244, 422, 425, 538, 876
HpyF3I CTNAG 5 cut(s) 360, 378, 843, 871, 933
HspAI GCGC 1 cut(s) 828
Kzo9I GATC 2 cut(s) 108, 725
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 140, 374, 496
Lsp1109I GCAGC 2 cut(s) 155, 553
LweI GCATC 1 cut(s) 839
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 641, 754
MalI GATC 2 cut(s) 110, 727
MboI GATC 2 cut(s) 108, 725
MfeI CAATTG 2 cut(s) 225, 279
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 39, 225, 279, 373, 666
MlyI GAGTC 2 cut(s) 590, 890
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 9 cut(s) 85, 406, 438, 441, 595, 598, 713, 802, 829
MseI TTAA 2 cut(s) 312, 669
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 434, 785
MspR9I CCNGG 2 cut(s) 474, 785
MunI CAATTG 2 cut(s) 225, 279
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 6 cut(s) 152, 244, 422, 425, 538, 876
NciI CCSGG 1 cut(s) 785
NdeII GATC 2 cut(s) 108, 725
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 641
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 336
PkrI GCNGC 8 cut(s) 145, 148, 418, 421, 424, 427, 543, 931
PleI GAGTC 2 cut(s) 589, 889
PpsI GAGTC 2 cut(s) 589, 889
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 725
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 312, 669
SatI GCNGC 8 cut(s) 144, 147, 417, 420, 423, 426, 542, 930
Sau3AI GATC 2 cut(s) 108, 725
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 2 cut(s) 590, 890
ScrFI CCNGG 2 cut(s) 474, 785
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 1 cut(s) 839
SinI GGWCC 1 cut(s) 34
Sse9I AATT 5 cut(s) 39, 225, 279, 373, 666
SsiI CCGC 7 cut(s) 112, 146, 416, 419, 422, 425, 850
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 472, 783
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 4 cut(s) 56, 191, 703, 760
TaqI TCGA 1 cut(s) 183
TasI AATT 5 cut(s) 39, 225, 279, 373, 666
TatI WGTACW 1 cut(s) 707
TauI GCSGC 5 cut(s) 149, 419, 422, 425, 428
Tru1I TTAA 2 cut(s) 312, 669
Tru9I TTAA 2 cut(s) 312, 669
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 143, 541, 929
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 279, 879
VpaK11BI GGWCC 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.