Rh6AG361300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000424
Physical Location & Seq
Forward (+)
56007494 .. 56008333
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG361300.1

Sequence Viewer

Length: 840 bp
ATGGAAGAAAGGAAATGTAGAAGACAGATTTTGCTCGCTCGGGCCATTTGCCATCTCTCTCTCCAGAGAGTTCTCTCACTTGTGTATCTCTATTCGACGGACAAATTCAGCAATGCTCGCAAGATTGTGCAACTCTTGGCACACCCTGAGAGAGTGACAAAATTTGTGGGCTGCTGTAATGGTTTGCTGCTCCTGCATAATCGATATCACGATCAAAACCTGGCAATTTGGAATCCGACGATTCAGAAATTCAAGAGAATTCCCTTTGCACCCATTGAGTTGTCGGCTGGGACTCAAAGGACACATACGATGTATGGTTTTGGATATGATCAATCCAGTACTGACTACAAAATTGTTAGAATTGTGGAAGTTGTAAATGGTGAAAGGGGTTCGGAAGTGAAGCTTTACAGTCTGAAATCCAACTTATGGAATAAGATTCAAAGCTTCCCTTACACAAGGAATTCATCTCATTTTTATGCACCTGCCGTTCCTCTAAATGGTGCTCTACATTGGCTCGTGACAGATAATTCACAATCCCAGAGTGTAAGAGTTGTTGCTCTTGATCTCTCAAAAGAAACTTTCAACAAGTTTTCTACCCCGTTTACTGATGTCGAAGGCGGAATTGGTTTGGAGGTGTTGGGAGGTAGACTCTGCATTTGTCTTAATCATTTCAAAACCAGTAATGAAGTCTGGAAAATGAAGGAATATGGAGTGGCTGAATCTTGGGTTCATTTCTATACTGTTGAGTGGAAGGTTGTGAAAAGACGTTTGAGTACTGCACAACTTTGGTCTTATCAAAGACTGGTGAAAGGGTTCTTTTGCATAACGACTCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

279

Amino Acids

32.22

Weight (kDa)

9.59

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 47 - 243 4.3e-16 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 50 - 193 1.1e-09 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 52 - 250 9.8e-28 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 490
Acc36I ACCTGC 1 cut(s) 490
AccB7I CCANNNNNTGG 1 cut(s) 426
AccI GTMKAC 1 cut(s) 646
AciI CCGC 1 cut(s) 618
AcsI RAATTY 5 cut(s) 104, 161, 248, 258, 460
AfaI GTAC 2 cut(s) 340, 775
AfiI CCNNNNNNNGG 2 cut(s) 426, 497
AgsI TTSAA 4 cut(s) 253, 440, 583, 673
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 2 cut(s) 403, 444
AluI AGCT 2 cut(s) 403, 444
Alw21I GWGCWC 1 cut(s) 505
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 171, 187
ApoI RAATTY 5 cut(s) 104, 161, 248, 258, 460
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
Asp700I GAANNNNTTC 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 392, 817
AvaI CYCGRG 1 cut(s) 39
BaeI ACNNNNGTAYC 2 cut(s) 68, 101
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 2 cut(s) 158, 174
BccI CCATC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 2 cut(s) 172, 188
BlsI GCNGC 2 cut(s) 173, 189
BmcAI AGTACT 2 cut(s) 340, 775
Bme1390I CCNGG 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 426, 497
Bse1I ACTGG 3 cut(s) 336, 678, 807
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 426, 497
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 336, 678, 807
BseXI GCAGC 2 cut(s) 158, 174
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 426, 497
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 505
Bsp143I GATC 3 cut(s) 211, 328, 562
BspACI CCGC 1 cut(s) 618
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 3 cut(s) 336, 678, 807
BssMI GATC 3 cut(s) 211, 328, 562
BssSI CACGAG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 410, 742
BstC8I GCNNGC 2 cut(s) 36, 118
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 3 cut(s) 214, 331, 565
BstMBI GATC 3 cut(s) 211, 328, 562
BstMWI GCNNNNNNNGC 2 cut(s) 117, 193
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 158, 174
BstV2I GAAGAC 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 202
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 2 cut(s) 36, 118
Cfr13I GGNCC 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 2 cut(s) 339, 774
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviJI RGCY 7 cut(s) 44, 171, 287, 403, 444, 514, 716
CviKI_1 RGCY 7 cut(s) 44, 171, 287, 403, 444, 514, 716
CviQI GTAC 2 cut(s) 339, 774
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 213, 330, 564
DpnII GATC 3 cut(s) 211, 328, 562
EciI GGCGGA 1 cut(s) 633
Eco32I GATATC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 39
EcoRI GAATTC 2 cut(s) 258, 460
EcoRII CCWGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 206
FaiI YATR 9 cut(s) 198, 306, 315, 327, 427, 477, 708, 738, 824
FalI AAGNNNNNCTT 4 cut(s) 387, 419, 433, 465
FaqI GGGAC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 646
Fnu4HI GCNGC 2 cut(s) 172, 188
Fsp4HI GCNGC 2 cut(s) 172, 188
GluI GCNGC 2 cut(s) 172, 188
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 44
HindIII AAGCTT 2 cut(s) 401, 442
HinfI GANTC 7 cut(s) 232, 241, 292, 436, 648, 719, 829
HphI GGTGA 2 cut(s) 392, 817
Hpy166II GTNNAC 2 cut(s) 603, 647
Hpy188I TCNGA 5 cut(s) 237, 246, 394, 414, 834
Hpy188III TCNNGA 6 cut(s) 64, 209, 253, 517, 560, 691
Hpy8I GTNNAC 2 cut(s) 603, 647
Hpy99I CGWCG 2 cut(s) 100, 241
HpyAV CCTTC 3 cut(s) 608, 694, 745
HpyCH4III ACNGT 2 cut(s) 410, 742
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 7 cut(s) 130, 196, 269, 479, 654, 779, 822
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 193
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 766
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 211, 328, 562
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 2 cut(s) 158, 174
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 154, 517
MalI GATC 3 cut(s) 213, 330, 564
MboI GATC 3 cut(s) 211, 328, 562
MboII GAAGA 2 cut(s) 17, 33
MhlI GDGCHC 1 cut(s) 505
MlyI GAGTC 3 cut(s) 286, 642, 823
MmeI TCCRAC 2 cut(s) 260, 444
MnlI CCTC 3 cut(s) 501, 625, 635
MroXI GAANNNNTTC 1 cut(s) 812
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 117, 193
NdeII GATC 3 cut(s) 211, 328, 562
NmuCI GTSAC 2 cut(s) 154, 517
PaqCI CACCTGC 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 812
PfeI GAWTC 4 cut(s) 232, 241, 436, 719
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 173, 189
PleI GAGTC 3 cut(s) 286, 642, 823
PpsI GAGTC 3 cut(s) 286, 642, 823
Psp6I CCWGG 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 2 cut(s) 340, 775
RsaNI GTAC 2 cut(s) 339, 774
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 2 cut(s) 172, 188
Sau3AI GATC 3 cut(s) 211, 328, 562
Sau96I GGNCC 1 cut(s) 42
ScaI AGTACT 2 cut(s) 340, 775
SchI GAGTC 3 cut(s) 286, 642, 823
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 505
SetI ASST 8 cut(s) 222, 405, 446, 484, 636, 646, 756, 769
SmiMI CAYNNNNRTG 1 cut(s) 474
SsiI CCGC 1 cut(s) 618
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 410, 742
TaiI ACGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 95, 202, 612
TatI WGTACW 2 cut(s) 338, 773
TfiI GAWTC 4 cut(s) 232, 241, 436, 719
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TseFI GTSAC 2 cut(s) 154, 517
TseI GCWGC 2 cut(s) 171, 187
Tsp45I GTSAC 2 cut(s) 154, 517
TspDTI ATGAA 4 cut(s) 453, 699, 713, 719
TspGWI ACGGA 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 426
XapI RAATTY 5 cut(s) 104, 161, 248, 258, 460
XmiI GTMKAC 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 812
ZrmI AGTACT 2 cut(s) 340, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.