RLG00000005282

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000424
Physical Location & Seq
Reverse (-)
66511149 .. 66512266
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005282

Sequence Viewer

Length: 1083 bp
ATGGAAGAAGGGAAAGCCAAGTCTTTATTTGTGATGGCGCATTCTGGTCACAGCTCATATAGCTCGCTGTATGAGGTGAAAATCCAACCAGGAGGACTAGTCATAGGCGGCGGTGGAGAATGTAGCAACCGTCGTAAGCGGAGGAGTTCTAGGCGTCCTAGGGTTCTGCTACTTGAGCCTGTAGCAGCAAGGTTACCGGAGCATTCACACTTGGGAACTGCCAGGTTCTTCAACAGCTCCAAACTATACTTGTTCCCAAACAAAACTACTCGGAGTACCTCAAAACCGCCCTATGCATATGTCTTCGACACGGAGACAAAGTCATCGGTCCCATTTAACTCTTCACCTCAAGCTCATAAGCCTTATGCAACTGTTGTTTCCGCCTATGGCAAGCTTTATCATCTTGCTACCAATCCACATTGCTGGCTGGAGATCCCAACTCCGGCCTTTGAGCGATATGATCCTGCCACTAATTGTTGGGAGTCGCTCCCTCCTTGTCCGGCCAGGCCAAGGAAGATACTAGGCTATGCCGTTTGTTATGGCTTTATTCTGTTCTCACTTGGCGACGACTCCTTCACGGCTTTTGATGTCACCAGAAAACAATGGCATGAAGTCCAACTGTGGCAGCCTGCTTCTAGTGATCATCGGTTCAGTGGGAAGGTTGTGGTTGTAGGTGACACTATCTATACCTTTAAGATTTCAAGTAATAGTGCATACAACTTTTGGTGGGATTTAGATCAGGAAGGTGATGTTACATTTTATATAAGCCCTCAACCCGATTTGGAAGGCTTGCATATCAACAAGGCCTTTCTGGCAAGGATATTTGGTTCACTTGGGAAACTAGGATTTTTGTCTTGTCCAAAATCGGTTCAAAATCGTGAACAGAAACTCTGTATCACCACGTTTCAAGTTGTGGTCGACAATGGGTGGGGAGGGAAGCATATCATCAAGACCTTACATTCAACTTTCTGTGAGGTGGACTCCCTCATTCGTTTGCGTTTCAGCTTTACTCCAGATTGTGATGATTTTGAACCCACAGAAGAGGAAATGAGAGGTGAAAAAACAAGCTGCAACATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

40.65

Weight (kDa)

8.44

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 89 - 209 7.1e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 918
AciI CCGC 5 cut(s) 108, 111, 139, 287, 381
AclWI GGATC 2 cut(s) 427, 455
AcoI YGGCCR 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 442, 510
AgsI TTSAA 6 cut(s) 232, 702, 872, 908, 963, 1031
AhlI ACTAGT 1 cut(s) 97
AjnI CCWGG 3 cut(s) 88, 221, 503
AloI GAACNNNNNNTCC 2 cut(s) 811, 843
AluBI AGCT 7 cut(s) 54, 63, 237, 353, 394, 1005, 1068
AluI AGCT 7 cut(s) 54, 63, 237, 353, 394, 1005, 1068
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 427, 455
AoxI GGCC 4 cut(s) 444, 501, 506, 804
ApeKI GCWGC 3 cut(s) 185, 625, 1068
AspA2I CCTAGG 1 cut(s) 158
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 7 cut(s) 88, 336, 583, 686, 758, 889, 1067
AvaII GGWCC 1 cut(s) 328
AvrII CCTAGG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 197, 637, 1055
BccI CCATC 1 cut(s) 28
BceAI ACGGC 2 cut(s) 515, 594
BciT130I CCWGG 3 cut(s) 90, 223, 505
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 1 cut(s) 308
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 6 cut(s) 98, 150, 159, 521, 636, 842
BfmI CTRYAG 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 812
BisI GCNGC 4 cut(s) 109, 186, 626, 1069
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 4 cut(s) 110, 187, 627, 1070
Bme1390I CCNGG 3 cut(s) 90, 223, 505
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 90, 223, 505
BpiI GAAGAC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 965, 997
BpmI CTGGAG 2 cut(s) 449, 996
BpuEI CTTGAG 2 cut(s) 194, 333
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 158, 509
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 510
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 3 cut(s) 90, 223, 505
BseDI CCNNGG 2 cut(s) 158, 509
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 442, 510
BseMI GCAATG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 197, 637, 1055
BshFI GGCC 4 cut(s) 446, 503, 508, 806
BsiSI CCGG 3 cut(s) 197, 443, 500
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 442, 510
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 2 cut(s) 40, 202
BsnI GGCC 4 cut(s) 446, 503, 508, 806
Bsp143I GATC 4 cut(s) 432, 460, 640, 736
BspACI CCGC 5 cut(s) 108, 111, 139, 287, 381
BspANI GGCC 4 cut(s) 446, 503, 508, 806
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 2 cut(s) 427, 455
BsrDI GCAATG 1 cut(s) 418
BssECI CCNNGG 2 cut(s) 158, 509
BssMI GATC 4 cut(s) 432, 460, 640, 736
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 2 cut(s) 158, 509
Bst2UI CCWGG 3 cut(s) 90, 223, 505
Bst4CI ACNGT 3 cut(s) 131, 373, 621
Bst6I CTCTTC 2 cut(s) 346, 1035
BstACI GRCGYC 1 cut(s) 154
BstC8I GCNNGC 5 cut(s) 65, 392, 425, 630, 791
BstEII GGTNACC 1 cut(s) 192
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 4 cut(s) 435, 463, 643, 739
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 432, 460, 640, 736
BstMWI GCNNNNNNNGC 3 cut(s) 60, 175, 812
BstNI CCWGG 3 cut(s) 90, 223, 505
BstPI GGTNACC 1 cut(s) 192
BstSCI CCNGG 3 cut(s) 88, 221, 503
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 197, 637, 1055
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 423
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 4 cut(s) 446, 503, 508, 806
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 5 cut(s) 65, 392, 425, 630, 791
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 328
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 608
CviQI GTAC 1 cut(s) 276
DpnI GATC 4 cut(s) 434, 462, 642, 738
DpnII GATC 4 cut(s) 432, 460, 640, 736
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 2 cut(s) 346, 1035
EarI CTCTTC 2 cut(s) 346, 1035
EciI GGCGGA 1 cut(s) 370
Eco130I CCWWGG 2 cut(s) 158, 509
Eco147I AGGCCT 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 192
EcoRII CCWGG 3 cut(s) 88, 221, 503
EcoT14I CCWWGG 2 cut(s) 158, 509
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 158, 509
FaeI CATG 1 cut(s) 611
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 607
FauNDI CATATG 1 cut(s) 298
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 918
Fnu4HI GCNGC 4 cut(s) 109, 186, 626, 1069
Fsp4HI GCNGC 4 cut(s) 109, 186, 626, 1069
FspBI CTAG 6 cut(s) 98, 150, 159, 521, 636, 842
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 109, 186, 626, 1069
GsuI CTGGAG 2 cut(s) 449, 996
HaeIII GGCC 4 cut(s) 446, 503, 508, 806
HapII CCGG 3 cut(s) 197, 443, 500
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 1 cut(s) 611
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 3 cut(s) 482, 569, 980
HpaII CCGG 3 cut(s) 197, 443, 500
HphI GGTGA 7 cut(s) 88, 336, 583, 686, 758, 889, 1067
Hpy166II GTNNAC 4 cut(s) 830, 881, 919, 979
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 4 cut(s) 740, 878, 949, 1013
Hpy8I GTNNAC 4 cut(s) 830, 881, 919, 979
Hpy99I CGWCG 2 cut(s) 135, 569
HpyAV CCTTC 4 cut(s) 583, 652, 737, 779
HpyCH4III ACNGT 3 cut(s) 131, 373, 621
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 5 cut(s) 296, 368, 713, 793, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 175, 812
HpySE526I ACGT 1 cut(s) 902
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 611
HspAI GCGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 4 cut(s) 432, 460, 640, 736
LmnI GCTCC 3 cut(s) 199, 242, 492
Lsp1109I GCAGC 3 cut(s) 197, 637, 1055
MaeI CTAG 6 cut(s) 98, 150, 159, 521, 636, 842
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 5 cut(s) 47, 192, 589, 674, 751
MalI GATC 4 cut(s) 434, 462, 642, 738
MboI GATC 4 cut(s) 432, 460, 640, 736
MboII GAAGA 6 cut(s) 17, 220, 295, 333, 526, 1052
MflI RGATCY 1 cut(s) 432
MluCI AATT 1 cut(s) 472
MlyI GAGTC 3 cut(s) 491, 563, 974
MmeI TCCRAC 2 cut(s) 109, 640
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 2 cut(s) 336, 693
MspI CCGG 3 cut(s) 197, 443, 500
MspR9I CCNGG 3 cut(s) 90, 223, 505
Mva1269I GAATGC 2 cut(s) 40, 202
MvaI CCWGG 3 cut(s) 90, 223, 505
MwoI GCNNNNNNNGC 3 cut(s) 60, 175, 812
NdeI CATATG 1 cut(s) 298
NdeII GATC 4 cut(s) 432, 460, 640, 736
NlaIII CATG 1 cut(s) 611
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 3 cut(s) 47, 589, 674
NsiI ATGCAT 1 cut(s) 298
PceI AGGCCT 1 cut(s) 806
PctI GAATGC 2 cut(s) 40, 202
PflFI GACNNNGTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 110, 187, 627, 1070
PleI GAGTC 3 cut(s) 490, 563, 974
PpsI GAGTC 3 cut(s) 490, 563, 974
Psp6I CCWGG 3 cut(s) 88, 221, 503
PspEI GGTNACC 1 cut(s) 192
PspGI CCWGG 3 cut(s) 88, 221, 503
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 432
PsyI GACNNNGTC 1 cut(s) 319
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SalI GTCGAC 1 cut(s) 917
SaqAI TTAA 2 cut(s) 336, 693
SatI GCNGC 4 cut(s) 109, 186, 626, 1069
Sau3AI GATC 4 cut(s) 432, 460, 640, 736
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 3 cut(s) 491, 563, 974
ScrFI CCNGG 3 cut(s) 90, 223, 505
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 2 cut(s) 173, 348
SmoI CTYRAG 2 cut(s) 173, 348
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 1 cut(s) 472
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 5 cut(s) 108, 111, 139, 287, 381
SspMI CTAG 6 cut(s) 98, 150, 159, 521, 636, 842
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 3 cut(s) 88, 221, 503
StyI CCWWGG 2 cut(s) 158, 509
TaaI ACNGT 3 cut(s) 131, 373, 621
TaiI ACGT 1 cut(s) 905
TaqI TCGA 2 cut(s) 306, 918
TaqII GACCGA 1 cut(s) 316
TasI AATT 1 cut(s) 472
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 336, 693
Tru9I TTAA 2 cut(s) 336, 693
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 3 cut(s) 47, 589, 674
TseI GCWGC 3 cut(s) 185, 625, 1068
Tsp45I GTSAC 3 cut(s) 47, 589, 674
TspDTI ATGAA 1 cut(s) 624
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 1 cut(s) 658
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 328
XmaJI CCTAGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 918
XspI CTAG 6 cut(s) 98, 150, 159, 521, 636, 842
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.