Rh6BG368100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000424
Physical Location & Seq
Forward (+)
59760918 .. 59762111
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG368100.1

Sequence Viewer

Length: 1194 bp
ATGGCCACTAAACGCAGCCGTTCAACAACTTCATATTTGCCGCCGGAAATTATATTTGAGATCCTTTTACATCTCCCACCCAAGGATTTGATACGATTCATGTGTGTTTGTGAAGCTTGGAATACTACCATCCGCAGCCAAGAGTTTGTCAAAGCCCAGCACGATCGCTCCATTAAGACCAACAGTCCTCGCACCATTGTACTTTTACAACGCGGTTCCTACGACCCTTGTCAATATTTCTCTTTATCTGTTGATTTTGACAGAGATATATTCAGTAATGCTGTGAGGATAAAGCAGCCATTGGAACACCCTGACGAAGAGACCATCATGTTGGGTTACTGTAACGGTTTGGTTTGCATAAAGTACTCTAACTCAATATCAAATGCCGAGAGTTTTGTAGTATGGAATCCGTCGATTCAAAGGTTCAAGAGAATTCCCTTCACAGCCATCGAGCTGCCAGCTGACACTACGAACAGAATTCCAAGTTACGGGTTTGGGTATGATTCAACCACTGATGACTATAAACTAGTGAGAGTGGTAGTGTTTACAAATATTGATAGGGATAAAGTACTGAGTTCGGAAGTGAAGATTTATAGTCTAAAATCTAACTCATGGAAAAAGATCCAAAGCTTGCCTTGCATTAAGGATTTTCGAATGTATTCAAAAGATCCGTCCTTTTTGAATGGTGCTCTACATTGGCTGATTTGTCATAGATCAGATAGCAAGATGAAACGAGTTCTATCTCTTGATCTTGCAACTGAGAAGTATGACGAGTTTCCCGCCCCCCCGGTAGATTACGAGTATCCTACAATATTGATGTTGGAGGTCTTGGGAGGATATCTATGTGTTTGTCCTAGACCTTATCCACCCGCAAAGTGGATCCCCCGAACTGATGTTTGGATTATGAAGGAATATGGAGTGACAGCATCTTGGACTCGGTTATGCACTATTGAGCGGGAGGATATGCCTCTGATGAGGTACGGATATTGCAAACCTTTGTCATTTTCAAAGACGCGAGAAATGATTCTTTTCAAAATAAGTTGTGCCACGCTTTTCTGGTATGATTTAGAGAAAAAGAGGGCAAAACAAATTGACATTTTTGATAAGCCCTCATCCTTTTCGACTGCTATTTGTGTGGGAAACCTTCGTCTCCTTGATGATCCTGTAACCGTTCGTGTCAGTGAAGGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

397

Amino Acids

46.03

Weight (kDa)

8.56

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 11 - 45 1.4e-08 F-box-like
F-box PF00646 13 - 49 1.5e-11 F-box domain
FBA_1 PF07734 80 - 345 1.4e-27 F-box associated beta propeller domain
FBA_3 PF08268 95 - 367 4.5e-19 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 97 - 254 6.4e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 955
AccII CGCG 2 cut(s) 213, 1015
AciI CCGC 6 cut(s) 41, 133, 213, 780, 870, 955
AclWI GGATC 6 cut(s) 55, 616, 662, 874, 887, 1154
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 432, 477
AfaI GTAC 4 cut(s) 201, 365, 570, 980
AfiI CCNNNNNNNGG 3 cut(s) 82, 488, 876
AgsI TTSAA 8 cut(s) 24, 419, 427, 507, 663, 682, 1008, 1033
AhdI GACNNNNNGTC 1 cut(s) 183
AhlI ACTAGT 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 880, 912
AluBI AGCT 4 cut(s) 116, 454, 461, 630
AluI AGCT 4 cut(s) 116, 454, 461, 630
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 2 cut(s) 314, 1154
AlwI GGATC 6 cut(s) 55, 616, 662, 874, 887, 1154
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 15, 135, 295, 454
ApoI RAATTY 2 cut(s) 432, 477
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp700I GAANNNNTTC 2 cut(s) 658, 1023
AsuC2I CCSGG 1 cut(s) 788
AsuII TTCGAA 1 cut(s) 652
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 4 cut(s) 27, 147, 307, 441
BccI CCATC 3 cut(s) 137, 332, 455
BceAI ACGGC 1 cut(s) 3
BciVI GTATCC 1 cut(s) 813
BcnI CCSGG 1 cut(s) 788
BcoDI GTCTC 2 cut(s) 314, 1154
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 2 cut(s) 527, 855
BfuI GTATCC 1 cut(s) 813
BisI GCNGC 5 cut(s) 16, 41, 136, 296, 455
BlsI GCNGC 5 cut(s) 17, 42, 137, 297, 456
BmcAI AGTACT 2 cut(s) 365, 570
Bme1390I CCNGG 1 cut(s) 788
BmeRI GACNNNNNGTC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 217, 881
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 1 cut(s) 935
BoxI GACNNNNGTC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 788
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 81, 786
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 488, 876
BseDI CCNNGG 2 cut(s) 81, 786
BseGI GGATG 2 cut(s) 129, 1112
BseLI CCNNNNNNNGG 3 cut(s) 82, 488, 876
BseMII CTCAG 2 cut(s) 563, 750
BseXI GCAGC 4 cut(s) 27, 147, 307, 441
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 2 cut(s) 213, 1015
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 2 cut(s) 44, 788
BslI CCNNNNNNNGG 3 cut(s) 82, 488, 876
BsmAI GTCTC 2 cut(s) 314, 1154
BsmBI CGTCTC 1 cut(s) 1154
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 652
Bsp1286I GDGCHC 1 cut(s) 691
Bsp143I GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
BspACI CCGC 6 cut(s) 41, 133, 213, 780, 870, 955
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 564, 751
BspFNI CGCG 2 cut(s) 213, 1015
BspLI GGNNCC 2 cut(s) 217, 881
BspPI GGATC 6 cut(s) 55, 616, 662, 874, 887, 1154
BspT104I TTCGAA 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 955
BssECI CCNNGG 2 cut(s) 81, 786
BssMI GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 4 cut(s) 185, 341, 347, 1171
Bst6I CTCTTC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 652
BstC8I GCNNGC 2 cut(s) 459, 632
BstDEI CTNAG 2 cut(s) 572, 759
BstF5I GGATG 2 cut(s) 129, 1112
BstFNI CGCG 2 cut(s) 213, 1015
BstKTI GATC 8 cut(s) 63, 166, 624, 670, 716, 751, 882, 1162
BstMAI GTCTC 2 cut(s) 314, 1154
BstMBI GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 636
BstPAI GACNNNNGTC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 786
BstUI CGCG 2 cut(s) 213, 1015
BstV1I GCAGC 4 cut(s) 27, 147, 307, 441
BstX2I RGATCY 4 cut(s) 60, 621, 667, 879
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 4 cut(s) 60, 621, 667, 879
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 129, 1112
BtsIMutI CAGTG 2 cut(s) 510, 1186
Cac8I GCNNGC 2 cut(s) 459, 632
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 4 cut(s) 200, 364, 569, 979
CviAII CATG 3 cut(s) 100, 328, 612
CviQI GTAC 4 cut(s) 200, 364, 569, 979
DdeI CTNAG 2 cut(s) 572, 759
DpnI GATC 8 cut(s) 62, 165, 623, 669, 715, 750, 881, 1161
DpnII GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
DriI GACNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 312
Eam1105I GACNNNNNGTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 839
EcoRI GAATTC 2 cut(s) 432, 477
EcoRV GATATC 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 1154
FaeI CATG 3 cut(s) 103, 331, 615
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 3 cut(s) 99, 327, 611
FauI CCCGC 3 cut(s) 787, 877, 948
Fnu4HI GCNGC 5 cut(s) 16, 41, 136, 296, 455
FokI GGATG 2 cut(s) 116, 1099
Fsp4HI GCNGC 5 cut(s) 16, 41, 136, 296, 455
FspBI CTAG 2 cut(s) 527, 855
GluI GCNGC 5 cut(s) 16, 41, 136, 296, 455
GsaI CCCAGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 44, 788
HgaI GACGC 1 cut(s) 1021
Hin1II CATG 3 cut(s) 103, 331, 615
HindIII AAGCTT 2 cut(s) 114, 628
HinfI GANTC 6 cut(s) 96, 406, 415, 503, 934, 1024
HpaII CCGG 2 cut(s) 44, 788
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 3 cut(s) 580, 718, 972
Hpy188III TCNNGA 2 cut(s) 427, 746
Hpy8I GTNNAC 1 cut(s) 546
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 4 cut(s) 448, 901, 1154, 1178
HpyCH4III ACNGT 4 cut(s) 185, 341, 347, 1171
HpyCH4V TGCA 5 cut(s) 357, 639, 755, 945, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 636
HpyF3I CTNAG 2 cut(s) 572, 759
Hsp92II CATG 3 cut(s) 103, 331, 615
Kzo9I GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 7 cut(s) 57, 170, 324, 471, 801, 1042, 1176
Lsp1109I GCAGC 4 cut(s) 27, 147, 307, 441
LweI GCATC 1 cut(s) 935
MaeI CTAG 2 cut(s) 527, 855
MaeIII GTNAC 5 cut(s) 335, 341, 485, 919, 1165
MalI GATC 8 cut(s) 62, 165, 623, 669, 715, 750, 881, 1161
MbiI CCGCTC 1 cut(s) 955
MboI GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
MboII GAAGA 2 cut(s) 329, 598
MflI RGATCY 4 cut(s) 60, 621, 667, 879
MhlI GDGCHC 1 cut(s) 691
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 48, 432, 477, 1089
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 928
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 9 cut(s) 198, 279, 817, 827, 952, 969, 978, 1071, 1120
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 658, 1023
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 174, 642
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 44, 788
MspR9I CCNGG 1 cut(s) 788
MvnI CGCG 2 cut(s) 213, 1015
MwoI GCNNNNNNNGC 1 cut(s) 636
NciI CCSGG 1 cut(s) 788
NdeII GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
NlaIII CATG 3 cut(s) 103, 331, 615
NlaIV GGNNCC 2 cut(s) 217, 881
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 919
NspV TTCGAA 1 cut(s) 652
PdmI GAANNNNTTC 2 cut(s) 658, 1023
PfeI GAWTC 5 cut(s) 96, 406, 415, 503, 1024
PkrI GCNGC 5 cut(s) 17, 42, 137, 297, 456
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PshAI GACNNNNGTC 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 217, 881
PsuI RGATCY 4 cut(s) 60, 621, 667, 879
PvuI CGATCG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 4 cut(s) 201, 365, 570, 980
RsaNI GTAC 4 cut(s) 200, 364, 569, 979
SaqAI TTAA 2 cut(s) 174, 642
SatI GCNGC 5 cut(s) 16, 41, 136, 296, 455
Sau3AI GATC 8 cut(s) 60, 163, 621, 667, 713, 748, 879, 1159
ScaI AGTACT 2 cut(s) 365, 570
SchI GAGTC 1 cut(s) 928
ScrFI CCNGG 1 cut(s) 788
SduI GDGCHC 1 cut(s) 691
SfaNI GCATC 1 cut(s) 935
SfuI TTCGAA 1 cut(s) 652
SpeI ACTAGT 1 cut(s) 526
Sse9I AATT 4 cut(s) 48, 432, 477, 1089
SsiI CCGC 6 cut(s) 41, 133, 213, 780, 870, 955
SspI AATATT 3 cut(s) 236, 553, 813
SspMI CTAG 2 cut(s) 527, 855
StyD4I CCNGG 1 cut(s) 786
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 4 cut(s) 185, 341, 347, 1171
TaqI TCGA 4 cut(s) 413, 450, 652, 1121
TasI AATT 4 cut(s) 48, 432, 477, 1089
TatI WGTACW 3 cut(s) 199, 363, 568
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 5 cut(s) 96, 406, 415, 503, 1024
Tru1I TTAA 2 cut(s) 174, 642
Tru9I TTAA 2 cut(s) 174, 642
TscAI CASTG 2 cut(s) 517, 1186
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 4 cut(s) 15, 135, 295, 454
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 4 cut(s) 21, 88, 743, 920
TspGWI ACGGA 3 cut(s) 399, 660, 996
TspRI CASTG 2 cut(s) 517, 1186
XapI RAATTY 2 cut(s) 432, 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmnI GAANNNNTTC 2 cut(s) 658, 1023
XspI CTAG 2 cut(s) 527, 855
ZrmI AGTACT 2 cut(s) 365, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.