pycom17g09720

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000424
Physical Location & Seq
Reverse (-)
7411276 .. 7412616
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g09720.1

Sequence Viewer

Length: 1341 bp
ATGTCATTGTCAAACCTCCTTCCGGAGCTACTCTTCGAGATCCTCACGCGTCTCCCTCCCAAGGATTTGCTCCGATCCCTCTGTGTTTCCAAATCTTGGAACGCCACCATCCGCAGCCGCCGCTTCATCAAAGCCCATCTCCAACGCTCTGCCGCAACGAACTCTGATCGTGCCCTTTTAGTTGGGTCGTATCCTTCCGATTTCTTTTCAGTGTCTTTTGACGACTCGGAGGCGTTCGGGGAATGCGTCGAGATTGCTCCGCCGTTGAAATGCCCTGAACCGCCGGTTGAAGTTGACCCCTTCGATCCGCGGTTGCCGGATTTCATATCTGTAAGGTGGATAAAATGCCCTGCCGCGTACACCGAGATCGTGGGCCGCTCCGTCCACGGCCTGGTTTGCATTCGCAAAGGAGGCAAAGGGGAGGACGGAGATATTGCTTTTTGGAACCCTTCAATTCAAAAGTTCAAGATGATTCCCCCCACAACCTTTGAGGCGGATTTGAATATCATGACCAAATTCGGTTCTCCCTACTATGCTTTCGGGTATGATTCCATTAACGATGACTATAAACTTGTTGGATTTGTGGAGTTTCTAAATAAAGATCCATCTTTGTTGACCTGTTTGGTTCAAATTTATAGCCTAAAATCTAACTCATGGAAAAGGATCCAAAACATCAACACCCCTTGGTGGAGTGATTATAGATTTGATTTAGATGATATCGTTTATGTGAACGGTGCTCTGTGTTGGCTGATGGATGATGGTTCAGATGTATACACAATTATAACCCTTGATCTTGCCACTGAGGAATGTAGCGCGTTTCCTGCCCCGGTTGATAAGCGATATTTGTGTTTGGAGGTCTTGGGAGACTGTTTATGTATTTGTGTTCGTGATGGACGAACCAGACATGATGGTTGGATTATGAAGGAATTTGGAGTTGCGGAATCTTGGACCTTGATTTATTCTATTGATGAAGAGGACAGTGGTTCCCGTTTTCGTAAGAACCATCATTACAAACCCTTGGTGTTCTCAAAGAATAGTGGAATGGTTCTTTTTATAGATGACTATTATATGCTTTTTTGGATTGACATAGAGGAAAACGCTGTCAAAGAAGTTGAAATTCATGGTTTTCCCCCTGGTGTAGTTATGGTGGAAAATTATAGTATTGGGCGTCCTGTCACGGTAACTATTTGTGTAGGGAGCCTTTGTCTTCTGGATGGTGACGATGTTCTTGCTGGGAGGCATCAACAACGCACCTCTTACCTCGAAGAAGCGGAAAGTTCCAAGCAGAGTGAAGAGTCTCTTGATCTGGTAGTGGAAGCAGCCGAAGATGATCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

447

Amino Acids

50.58

Weight (kDa)

4.68

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 2.9e-09 F-box domain
F-box-like PF12937 8 - 39 2.1e-06 F-box-like
FBA_3 PF08268 123 - 378 2e-14 F-box associated beta propeller domain
FBA_1 PF07734 131 - 374 1.9e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AccB7I CCANNNNNTGG 2 cut(s) 96, 391
AccBSI CCGCTC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 771
AccII CGCG 4 cut(s) 49, 310, 356, 815
AccIII TCCGGA 1 cut(s) 22
AclWI GGATC 6 cut(s) 34, 69, 299, 596, 658, 671
AcsI RAATTY 4 cut(s) 515, 630, 926, 1116
AcyI GRCGYC 1 cut(s) 1168
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 5 cut(s) 22, 61, 96, 391, 687
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 8 cut(s) 268, 290, 453, 458, 466, 502, 629, 1115
AjnI CCWGG 2 cut(s) 390, 1132
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 3 cut(s) 56, 858, 1302
AlwI GGATC 6 cut(s) 34, 69, 299, 596, 658, 671
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 2 cut(s) 373, 388
ApeKI GCWGC 2 cut(s) 114, 1319
ApoI RAATTY 4 cut(s) 515, 630, 926, 1116
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 2 cut(s) 373, 948
AsuC2I CCSGG 1 cut(s) 827
AsuHPI GGTGA 1 cut(s) 1229
AvaII GGWCC 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 1199
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 126, 1331
BccI CCATC 9 cut(s) 116, 144, 613, 745, 752, 884, 902, 1011, 1208
BceAI ACGGC 2 cut(s) 247, 403
BcgI CGANNNNNNTGC 2 cut(s) 1211, 1245
BciT130I CCWGG 2 cut(s) 392, 1134
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 1330
BcnI CCSGG 1 cut(s) 827
BcoDI GTCTC 3 cut(s) 56, 858, 1302
BfuI GTATCC 1 cut(s) 201
BisI GCNGC 7 cut(s) 115, 118, 121, 153, 354, 376, 1320
BlsI GCNGC 7 cut(s) 116, 119, 122, 154, 355, 377, 1321
Bme1390I CCNGG 3 cut(s) 392, 827, 1134
Bme18I GGWCC 1 cut(s) 948
BmgT120I GGNCC 2 cut(s) 373, 948
BmiI GGNNCC 4 cut(s) 446, 665, 985, 1199
BmrFI CCNGG 3 cut(s) 392, 827, 1134
BmsI GCATC 1 cut(s) 1249
BpiI GAAGAC 1 cut(s) 1199
BpuMI CCSGG 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 1168
BsaJI CCNNGG 7 cut(s) 60, 308, 385, 683, 825, 1017, 1132
BsaWI WCCGGW 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 1189, 1219
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 61, 96, 391, 687
Bse118I RCCGGY 1 cut(s) 283
BseAI TCCGGA 1 cut(s) 22
BseBI CCWGG 2 cut(s) 392, 1134
BseDI CCNNGG 7 cut(s) 60, 308, 385, 683, 825, 1017, 1132
BseGI GGATG 3 cut(s) 108, 760, 1219
BseLI CCNNNNNNNGG 5 cut(s) 22, 61, 96, 391, 687
BseMII CTCAG 1 cut(s) 792
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 2 cut(s) 126, 1331
BseYI CCCAGC 1 cut(s) 1232
Bsh1236I CGCG 4 cut(s) 49, 310, 356, 815
BshFI GGCC 2 cut(s) 375, 390
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 4 cut(s) 23, 284, 317, 827
BslI CCNNNNNNNGG 5 cut(s) 22, 61, 96, 391, 687
BsmAI GTCTC 3 cut(s) 56, 858, 1302
BsmBI CGTCTC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 248, 399
BsnI GGCC 2 cut(s) 375, 390
Bsp1286I GDGCHC 2 cut(s) 175, 739
Bsp13I TCCGGA 1 cut(s) 22
BspANI GGCC 2 cut(s) 375, 390
BspCNI CTCAG 1 cut(s) 793
BspEI TCCGGA 1 cut(s) 22
BspFNI CGCG 4 cut(s) 49, 310, 356, 815
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 446, 665, 985, 1199
BspPI GGATC 6 cut(s) 34, 69, 299, 596, 658, 671
BsrBI CCGCTC 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 7 cut(s) 60, 308, 385, 683, 825, 1017, 1132
BssNAI GTATAC 1 cut(s) 772
BssNI GRCGYC 1 cut(s) 1168
BssT1I CCWWGG 3 cut(s) 60, 683, 1017
Bst1107I GTATAC 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 392, 1134
Bst4CI ACNGT 4 cut(s) 734, 869, 980, 1180
Bst6I CTCTTC 3 cut(s) 38, 966, 1287
BstACI GRCGYC 1 cut(s) 1168
BstDEI CTNAG 1 cut(s) 801
BstDSI CCRYGG 2 cut(s) 308, 385
BstF5I GGATG 3 cut(s) 108, 760, 1219
BstFNI CGCG 4 cut(s) 49, 310, 356, 815
BstHHI GCGC 1 cut(s) 815
BstMAI GTCTC 3 cut(s) 56, 858, 1302
BstMWI GCNNNNNNNGC 4 cut(s) 120, 396, 411, 821
BstNI CCWGG 2 cut(s) 392, 1134
BstSCI CCNGG 3 cut(s) 390, 825, 1132
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 4 cut(s) 49, 310, 356, 815
BstV1I GCAGC 2 cut(s) 126, 1331
BstV2I GAAGAC 1 cut(s) 1199
BstX2I RGATCY 3 cut(s) 39, 601, 663
BstYI RGATCY 3 cut(s) 39, 601, 663
BstZ17I GTATAC 1 cut(s) 772
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 375, 390
BtgI CCRYGG 2 cut(s) 308, 385
BtsCI GGATG 3 cut(s) 108, 760, 1219
BtsIMutI CAGTG 3 cut(s) 216, 798, 985
CciI TCATGA 1 cut(s) 507
CfoI GCGC 1 cut(s) 815
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 373, 948
Cfr42I CCGCGG 1 cut(s) 311
CseI GACGC 3 cut(s) 38, 235, 1157
Csp6I GTAC 1 cut(s) 358
CspCI CAANNNNNGTGG 2 cut(s) 469, 504
CviAII CATG 4 cut(s) 508, 654, 905, 1121
CviJI RGCY 9 cut(s) 28, 117, 134, 375, 390, 639, 748, 1200, 1322
CviKI_1 RGCY 9 cut(s) 28, 117, 134, 375, 390, 639, 748, 1200, 1322
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 801
Eam1104I CTCTTC 3 cut(s) 38, 966, 1287
EarI CTCTTC 3 cut(s) 38, 966, 1287
EciI GGCGGA 2 cut(s) 249, 509
Eco130I CCWWGG 3 cut(s) 60, 683, 1017
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 948
EcoRII CCWGG 2 cut(s) 390, 1132
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 3 cut(s) 60, 683, 1017
ErhI CCWWGG 3 cut(s) 60, 683, 1017
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 511, 657, 908, 1124
FalI AAGNNNNNCTT 2 cut(s) 1284, 1316
FatI CATG 4 cut(s) 507, 653, 904, 1120
FbaI TGATCA 1 cut(s) 1330
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 7 cut(s) 115, 118, 121, 153, 354, 376, 1320
FokI GGATG 3 cut(s) 95, 767, 1226
Fsp4HI GCNGC 7 cut(s) 115, 118, 121, 153, 354, 376, 1320
GlaI GCGC 1 cut(s) 814
GluI GCNGC 7 cut(s) 115, 118, 121, 153, 354, 376, 1320
GsaI CCCAGC 1 cut(s) 1236
HaeIII GGCC 2 cut(s) 375, 390
HapII CCGG 4 cut(s) 23, 284, 317, 827
HgaI GACGC 3 cut(s) 38, 235, 1157
HhaI GCGC 1 cut(s) 815
Hin1I GRCGYC 1 cut(s) 1168
Hin1II CATG 4 cut(s) 511, 657, 908, 1124
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 2 cut(s) 295, 615
HindII GTYRAC 2 cut(s) 295, 615
HinfI GANTC 5 cut(s) 224, 472, 548, 941, 1295
HpaII CCGG 4 cut(s) 23, 284, 317, 827
HphI GGTGA 1 cut(s) 1229
Hpy166II GTNNAC 6 cut(s) 295, 360, 385, 615, 730, 772
Hpy188I TCNGA 5 cut(s) 74, 166, 199, 229, 766
Hpy188III TCNNGA 8 cut(s) 23, 37, 250, 466, 508, 887, 1211, 1301
Hpy8I GTNNAC 6 cut(s) 295, 360, 385, 615, 730, 772
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 5 cut(s) 29, 204, 310, 459, 916
HpyCH4III ACNGT 4 cut(s) 734, 869, 980, 1180
HpyCH4V TGCA 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 396, 411, 821
HpyF3I CTNAG 1 cut(s) 801
Hsp92I GRCGYC 1 cut(s) 1168
Hsp92II CATG 4 cut(s) 511, 657, 908, 1124
HspAI GCGC 1 cut(s) 813
Kpn2I TCCGGA 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 1330
KspI CCGCGG 1 cut(s) 311
LmnI GCTCC 5 cut(s) 25, 75, 262, 383, 1197
Lsp1109I GCAGC 2 cut(s) 126, 1331
LweI GCATC 1 cut(s) 1249
MaeIII GTNAC 3 cut(s) 1174, 1180, 1217
MbiI CCGCTC 1 cut(s) 378
MboII GAAGA 6 cut(s) 25, 983, 1199, 1277, 1304, 1337
MflI RGATCY 3 cut(s) 39, 601, 663
MhlI GDGCHC 2 cut(s) 175, 739
MluCI AATT 8 cut(s) 453, 515, 630, 777, 926, 1116, 1153, 1336
MluI ACGCGT 1 cut(s) 47
MlyI GAGTC 2 cut(s) 218, 1304
MmeI TCCRAC 3 cut(s) 166, 556, 893
MroI TCCGGA 1 cut(s) 22
MseI TTAA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 4 cut(s) 23, 284, 317, 827
MspR9I CCNGG 3 cut(s) 392, 827, 1134
Mva1269I GAATGC 2 cut(s) 248, 399
MvaI CCWGG 2 cut(s) 392, 1134
MvnI CGCG 4 cut(s) 49, 310, 356, 815
MwoI GCNNNNNNNGC 4 cut(s) 120, 396, 411, 821
NciI CCSGG 1 cut(s) 827
NlaIII CATG 4 cut(s) 511, 657, 908, 1124
NlaIV GGNNCC 4 cut(s) 446, 665, 985, 1199
NmuCI GTSAC 2 cut(s) 1174, 1217
PagI TCATGA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 892
PctI GAATGC 2 cut(s) 248, 399
PfeI GAWTC 3 cut(s) 472, 548, 941
PflMI CCANNNNNTGG 2 cut(s) 96, 391
PkrI GCNGC 7 cut(s) 116, 119, 122, 154, 355, 377, 1321
PleI GAGTC 2 cut(s) 218, 1303
PpsI GAGTC 2 cut(s) 218, 1303
PsiI TTATAA 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 390, 1132
PspFI CCCAGC 1 cut(s) 1232
PspGI CCWGG 2 cut(s) 390, 1132
PspN4I GGNNCC 4 cut(s) 446, 665, 985, 1199
PspPI GGNCC 2 cut(s) 373, 948
PsrI GAACNNNNNNTAC 2 cut(s) 992, 1024
PsuI RGATCY 3 cut(s) 39, 601, 663
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacII CCGCGG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 7 cut(s) 115, 118, 121, 153, 354, 376, 1320
Sau96I GGNCC 2 cut(s) 373, 948
SchI GAGTC 2 cut(s) 218, 1304
ScrFI CCNGG 3 cut(s) 392, 827, 1134
SduI GDGCHC 2 cut(s) 175, 739
SetI ASST 9 cut(s) 18, 30, 338, 488, 620, 858, 953, 1256, 1263
SfaNI GCATC 1 cut(s) 1249
Sfr303I CCGCGG 1 cut(s) 311
SgrBI CCGCGG 1 cut(s) 311
SinI GGWCC 1 cut(s) 948
Sse9I AATT 8 cut(s) 453, 515, 630, 777, 926, 1116, 1153, 1336
StyD4I CCNGG 3 cut(s) 390, 825, 1132
StyI CCWWGG 3 cut(s) 60, 683, 1017
TaaI ACNGT 4 cut(s) 734, 869, 980, 1180
TaqI TCGA 4 cut(s) 36, 249, 303, 1263
TasI AATT 8 cut(s) 453, 515, 630, 777, 926, 1116, 1153, 1336
TauI GCSGC 5 cut(s) 120, 123, 155, 356, 378
TfiI GAWTC 3 cut(s) 472, 548, 941
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 3 cut(s) 216, 805, 985
TseFI GTSAC 2 cut(s) 1174, 1217
TseI GCWGC 2 cut(s) 114, 1319
Tsp45I GTSAC 2 cut(s) 1174, 1217
TspDTI ATGAA 5 cut(s) 115, 313, 935, 984, 1109
TspGWI ACGGA 2 cut(s) 370, 441
TspRI CASTG 3 cut(s) 216, 805, 985
Van91I CCANNNNNTGG 2 cut(s) 96, 391
VpaK11BI GGWCC 1 cut(s) 948
XapI RAATTY 4 cut(s) 515, 630, 926, 1116
XmiI GTMKAC 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.