RLG00000005281

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000424
Physical Location & Seq
Reverse (-)
66509997 .. 66511117
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005281

Sequence Viewer

Length: 906 bp
ATGTCACACACTATCCCACAAGAGCTAATCTTTGACATACTTGCAAGGCTTTCGACCAAGGATTTGATACGACTAATGTGTGTTTCCAAAGCATGGAATGCAGCCATCCAAGACCCAGAATGGGCCAAGCTGCATCTCCAACTCTCCATCAAGCGCAACTCTTTGGATCCTATCTTTTTAATTCTACCATCTAAGCTTGATGAGTTTTTTACAATGACCTTGTTCTACAATGGCACAAAGGGAAGACTTGTGTTAATCAAGCAGCAGTCAAAGCAGTTGATAAAAGAAATAAGATCTTGGGCTGCAGCAATGGTTTGCTTTGCATTTACGAATCTATGGAAAATGAAGACTTTGGTTTGTGGAATCCGACAATCCACAAGTTTAAGAGGATTCCTTTGCCAGCCTTCAATAAGGGGACGCAGAGCAAGACTTTTTATGGCTTCGGGTGATAAAGATGGAGGACCAATGATAGTTCTATCCCTTGATCTGGCAAGTGAAGAATACCACTGGTTTTCTGCCCCAGCTTGTTATAACAGTGAGCATTTGAGTATCAACTACTTGGATTTGCATGTAATGGCAGGGTTCTTATGCTTTTGTTTCGACACTGATTCCCTCCGGGAGACTTGGATTTTGAAGGAATATGGAGTTACCAAATCTTGGACCAAGCTTTGTTATTATAACAGATATTGGAGTTGCAATCCTTTGATCTTTTCAAAGTGTGGTAAGAAGATTCTTTTCGCAAGAGTTGCAGAATTGTTTTGGTATGATCTGGAGAACAAGAGAATTGAAAATGTCAGCACTGATATCAGGCATGTGAGGAGTAGGGGGTTACAGACGGTAACTTCTGTGGAAAACCTTAATCTTCTTAGGAGGCGGCCAGAACTACCTTATAATAACTGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

302

Amino Acids

35.04

Weight (kDa)

9.29

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 46 4e-10 F-box-like
F-box PF00646 5 - 40 1.8e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 531, 678, 891
AccB7I CCANNNNNTGG 2 cut(s) 93, 657
AciI CCGC 1 cut(s) 874
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 1 cut(s) 875
AfiI CCNNNNNNNGG 4 cut(s) 93, 121, 487, 657
AgsI TTSAA 4 cut(s) 408, 634, 714, 788
AluBI AGCT 5 cut(s) 25, 130, 196, 524, 667
AluI AGCT 5 cut(s) 25, 130, 196, 524, 667
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 2 cut(s) 161, 174
AoxI GGCC 2 cut(s) 123, 875
ApeKI GCWGC 5 cut(s) 101, 130, 262, 302, 305
ArsI GACNNNNNNTTYG 4 cut(s) 46, 78, 613, 645
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 123, 461, 660
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 1 cut(s) 458
AvaII GGWCC 2 cut(s) 461, 660
BamHI GGATCC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 250, 353
BbvI GCAGC 5 cut(s) 113, 117, 274, 289, 317
BccI CCATC 4 cut(s) 113, 155, 196, 449
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 303
BglII AGATCT 1 cut(s) 293
BisI GCNGC 6 cut(s) 102, 131, 263, 303, 306, 875
BlsI GCNGC 6 cut(s) 103, 132, 264, 304, 307, 876
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 2 cut(s) 461, 660
BmgT120I GGNCC 3 cut(s) 123, 461, 660
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 250, 353
BpmI CTGGAG 1 cut(s) 791
BpuMI CCSGG 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 121, 487, 657
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 93, 121, 487, 657
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 832
BseXI GCAGC 5 cut(s) 113, 117, 274, 289, 317
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 125, 877
BsiSI CCGG 1 cut(s) 616
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 4 cut(s) 93, 121, 487, 657
BsmAI GTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 2 cut(s) 125, 877
Bsp143I GATC 5 cut(s) 166, 293, 484, 705, 766
BspACI CCGC 1 cut(s) 874
BspANI GGCC 2 cut(s) 125, 877
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 2 cut(s) 161, 174
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 5 cut(s) 166, 293, 484, 705, 766
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 536, 838, 899
BstAPI GCANNNNNTGC 2 cut(s) 98, 746
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 2 cut(s) 192, 866
BstF5I GGATG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 5 cut(s) 169, 296, 487, 708, 769
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 5 cut(s) 166, 293, 484, 705, 766
BstMWI GCNNNNNNNGC 3 cut(s) 98, 271, 746
BstNSI RCATGY 2 cut(s) 572, 815
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 5 cut(s) 113, 117, 274, 289, 317
BstV2I GAAGAC 2 cut(s) 250, 353
BstX2I RGATCY 2 cut(s) 166, 293
BstYI RGATCY 2 cut(s) 166, 293
BsuRI GGCC 2 cut(s) 125, 877
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 4 cut(s) 505, 541, 603, 798
Cac8I GCNNGC 1 cut(s) 401
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 123, 461, 660
CseI GACGC 1 cut(s) 426
CviAII CATG 3 cut(s) 93, 569, 812
DdeI CTNAG 2 cut(s) 192, 866
DpnI GATC 5 cut(s) 168, 295, 486, 707, 768
DpnII GATC 5 cut(s) 166, 293, 484, 705, 766
EaeI YGGCCR 1 cut(s) 875
Eco130I CCWWGG 1 cut(s) 57
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 461, 660
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 96, 572, 815
FaqI GGGAC 1 cut(s) 429
FatI CATG 3 cut(s) 92, 568, 811
Fnu4HI GCNGC 6 cut(s) 102, 131, 263, 303, 306, 875
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 102, 131, 263, 303, 306, 875
GlaI GCGC 1 cut(s) 155
GluI GCNGC 6 cut(s) 102, 131, 263, 303, 306, 875
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 791
HaeIII GGCC 2 cut(s) 125, 877
HapII CCGG 1 cut(s) 616
HgaI GACGC 1 cut(s) 426
HhaI GCGC 1 cut(s) 156
Hin1II CATG 3 cut(s) 96, 572, 815
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 194, 665
HinfI GANTC 5 cut(s) 331, 363, 390, 608, 730
HpaII CCGG 1 cut(s) 616
HphI GGTGA 1 cut(s) 458
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 1 cut(s) 770
HpyAV CCTTC 2 cut(s) 414, 628
HpyCH4III ACNGT 3 cut(s) 536, 838, 899
HpyCH4V TGCA 8 cut(s) 44, 101, 133, 305, 323, 568, 696, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 271, 746
HpyF3I CTNAG 2 cut(s) 192, 866
Hsp92II CATG 3 cut(s) 96, 572, 815
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 5 cut(s) 166, 293, 484, 705, 766
Lsp1109I GCAGC 5 cut(s) 113, 117, 274, 289, 317
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 5 cut(s) 3, 646, 828, 838, 899
MalI GATC 5 cut(s) 168, 295, 486, 707, 768
MboI GATC 5 cut(s) 166, 293, 484, 705, 766
MboII GAAGA 5 cut(s) 255, 358, 509, 739, 854
MflI RGATCY 2 cut(s) 166, 293
MluCI AATT 3 cut(s) 180, 752, 783
MmeI TCCRAC 2 cut(s) 163, 391
MnlI CCTC 5 cut(s) 380, 452, 623, 810, 864
MseI TTAA 4 cut(s) 179, 254, 383, 858
MspI CCGG 1 cut(s) 616
MspR9I CCNGG 1 cut(s) 617
Mva1269I GAATGC 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 98, 271, 746
NciI CCSGG 1 cut(s) 617
NdeII GATC 5 cut(s) 166, 293, 484, 705, 766
NlaIII CATG 3 cut(s) 96, 572, 815
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 3, 899
NspI RCATGY 2 cut(s) 572, 815
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 5 cut(s) 331, 363, 390, 608, 730
PflMI CCANNNNNTGG 2 cut(s) 93, 657
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 6 cut(s) 103, 132, 264, 304, 307, 876
PsiI TTATAA 3 cut(s) 531, 678, 891
PspFI CCCAGC 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 3 cut(s) 123, 461, 660
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 2 cut(s) 166, 293
SaqAI TTAA 4 cut(s) 179, 254, 383, 858
SatI GCNGC 6 cut(s) 102, 131, 263, 303, 306, 875
Sau3AI GATC 5 cut(s) 166, 293, 484, 705, 766
Sau96I GGNCC 3 cut(s) 123, 461, 660
ScrFI CCNGG 1 cut(s) 617
SetI ASST 8 cut(s) 27, 132, 198, 221, 526, 669, 858, 889
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 2 cut(s) 461, 660
Sse9I AATT 3 cut(s) 180, 752, 783
SsiI CCGC 1 cut(s) 874
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 536, 838, 899
TaqI TCGA 2 cut(s) 53, 600
TasI AATT 3 cut(s) 180, 752, 783
TauI GCSGC 1 cut(s) 877
TfiI GAWTC 5 cut(s) 331, 363, 390, 608, 730
Tru1I TTAA 4 cut(s) 179, 254, 383, 858
Tru9I TTAA 4 cut(s) 179, 254, 383, 858
TscAI CASTG 4 cut(s) 512, 541, 610, 805
TseFI GTSAC 2 cut(s) 3, 899
TseI GCWGC 5 cut(s) 101, 130, 262, 302, 305
Tsp45I GTSAC 2 cut(s) 3, 899
TspDTI ATGAA 1 cut(s) 359
TspRI CASTG 4 cut(s) 512, 541, 610, 805
Van91I CCANNNNNTGG 2 cut(s) 93, 657
VpaK11BI GGWCC 2 cut(s) 461, 660
XceI RCATGY 2 cut(s) 572, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.