Rh7BG029500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000424
Physical Location & Seq
Reverse (-)
1999395 .. 2000249
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG029500.1

Sequence Viewer

Length: 855 bp
ATGGAAGGGAAACCTAAATCTGTTTTTATGGTGGCGCATTCTGATGACGGCTCATATAGTGCCCTATATGAAATGAAAATCCAACCAGGAGGAGAAGTTATAGGCGTCGTAGGCGGAGGAGGAAGATCAGCAGCAACTCATAAAAAACGCCGCCAGCTACTTGAGCCGGTGGTCAAGTTGTTTGATGACAAAGGTATAGTGGTACCGGAGCATTCAAACTTGGCAACTGCAAGGTTCTTCAGCCGCTCCAAATTATACCTATGGCTGAACGAAAGCAATTCTAAAATGCATAACAAAGAGACCACTACCAACTCAACATCCGCACCCTGCTATGGATATGTTTTGGACACGGAGACGAAGTCATTGGTCCCATTCAAGTCACCTCAAGCACATAAGCCATCAGCAACTGTTATTTCCGCCTTTGGTAAGCTTTATCTTCTTGCGAATCCAGAATGCTGGCCGGAGATCCCAACCCCGGCCTTTGAGCGATATGATCCTGCCACTAATTGTTGGGAATCCCTCCCTCCTTTTCCAGGTTATAATCACCGGAAAGAGATTAGAATAATAGGTTATGCCGTCTGTTCCAGTTTTATTCTGTTCACAGCAGACCACCATAAGGAATACGTGGCATTCAATGTGATCAGAAAACAATGGGCTTTTGATGTGACCAGAAAACAATGGCATAAAGTCAAAGTGTGGCCGCCTACTCAATATCTTTTAACGAATGGTTCAGTCGGCCGGGGGAGGGCCGTGGTTTTAGGTGATACTATCTATACCTTTAACTATTCATGTACTAGTGTAGTGGCATTCAACTTTTGGTGGGATTTAGATGAGGATGGTGATGTTACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.06

Weight (kDa)

8.66

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 113 - 233 1.9e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 6 cut(s) 114, 151, 244, 321, 417, 701
AclWI GGATC 2 cut(s) 460, 488
AcoI YGGCCR 3 cut(s) 458, 698, 736
AcuI CTGAAG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 204, 793
AfiI CCNNNNNNNGG 5 cut(s) 332, 475, 533, 616, 745
AgsI TTSAA 4 cut(s) 216, 376, 634, 811
AhlI ACTAGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 85, 532
AluBI AGCT 2 cut(s) 157, 430
AluI AGCT 2 cut(s) 157, 430
Alw26I GTCTC 2 cut(s) 293, 347
AlwI GGATC 2 cut(s) 460, 488
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 5 cut(s) 458, 477, 698, 736, 747
ApeKI GCWGC 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 202
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 367, 747
AsuC2I CCSGG 2 cut(s) 476, 740
AsuHPI GGTGA 4 cut(s) 372, 536, 773, 851
AvaII GGWCC 1 cut(s) 367
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 406, 830
BceAI ACGGC 3 cut(s) 64, 560, 734
BciT130I CCWGG 2 cut(s) 87, 534
BclI TGATCA 1 cut(s) 639
BcnI CCSGG 2 cut(s) 476, 740
BcoDI GTCTC 2 cut(s) 293, 347
BcuI ACTAGT 1 cut(s) 794
BfaI CTAG 2 cut(s) 795, 853
BisI GCNGC 4 cut(s) 132, 151, 244, 701
BlsI GCNGC 4 cut(s) 133, 152, 245, 702
Bme1390I CCNGG 4 cut(s) 87, 476, 534, 740
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 367, 747
BmiI GGNNCC 2 cut(s) 204, 369
BmrFI CCNGG 4 cut(s) 87, 476, 534, 740
BpuEI CTTGAG 2 cut(s) 182, 369
BpuMI CCSGG 2 cut(s) 476, 740
BsaAI YACGTR 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 3 cut(s) 474, 739, 750
BsaWI WCCGGW 2 cut(s) 205, 546
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 344, 374
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 475, 533, 616, 745
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 585
BseBI CCWGG 2 cut(s) 87, 534
BseDI CCNNGG 3 cut(s) 474, 739, 750
BseGI GGATG 2 cut(s) 317, 841
BseLI CCNNNNNNNGG 5 cut(s) 332, 475, 533, 616, 745
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 2 cut(s) 105, 132
BseSI GKGCMC 1 cut(s) 64
BseX3I CGGCCG 1 cut(s) 736
BseXI GCAGC 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 739
BshFI GGCC 5 cut(s) 460, 479, 700, 738, 749
BshNI GGYRCC 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 739
BsiSI CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 5 cut(s) 332, 475, 533, 616, 745
BsmAI GTCTC 2 cut(s) 293, 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 5 cut(s) 37, 211, 458, 629, 806
BsnI GGCC 5 cut(s) 460, 479, 700, 738, 749
Bso31I GGTCTC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 125, 465, 493, 639
BspACI CCGC 6 cut(s) 114, 151, 244, 321, 417, 701
BspANI GGCC 5 cut(s) 460, 479, 700, 738, 749
BspLI GGNNCC 2 cut(s) 204, 369
BspPI GGATC 2 cut(s) 460, 488
BspT107I GGYRCC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 585
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 474, 739, 750
BssMI GATC 4 cut(s) 125, 465, 493, 639
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 87, 534
Bst4CI ACNGT 1 cut(s) 409
BstACI GRCGYC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 155, 458
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 317, 841
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 128, 468, 496, 642
BstMAI GTCTC 2 cut(s) 293, 347
BstMBI GATC 4 cut(s) 125, 465, 493, 639
BstMCI CGRYCG 1 cut(s) 739
BstMWI GCNNNNNNNGC 2 cut(s) 111, 163
BstNI CCWGG 2 cut(s) 87, 534
BstSCI CCNGG 4 cut(s) 85, 474, 532, 738
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 456
BstYI RGATCY 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 736
BsuRI GGCC 5 cut(s) 460, 479, 700, 738, 749
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 317, 841
Cac8I GCNNGC 2 cut(s) 155, 458
CaiI CAGNNNCTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 367, 747
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 203, 792
CviAII CATG 1 cut(s) 789
CviQI GTAC 2 cut(s) 203, 792
DpnI GATC 4 cut(s) 127, 467, 495, 641
DpnII GATC 4 cut(s) 125, 465, 493, 639
EaeI YGGCCR 3 cut(s) 458, 698, 736
EagI CGGCCG 1 cut(s) 736
EciI GGCGGA 2 cut(s) 129, 406
EclXI CGGCCG 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 367
Eco52I CGGCCG 1 cut(s) 736
Eco57I CTGAAG 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 85, 532
EcoT22I ATGCAT 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 1 cut(s) 792
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 788
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 4 cut(s) 132, 151, 244, 701
FokI GGATG 2 cut(s) 304, 848
Fsp4HI GCNGC 4 cut(s) 132, 151, 244, 701
FspBI CTAG 2 cut(s) 795, 853
GlaI GCGC 1 cut(s) 36
GluI GCNGC 4 cut(s) 132, 151, 244, 701
HaeIII GGCC 5 cut(s) 460, 479, 700, 738, 749
HapII CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 1 cut(s) 792
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 2 cut(s) 445, 515
HpaII CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
HphI GGTGA 4 cut(s) 372, 536, 773, 851
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 2 cut(s) 43, 644
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 2 cut(s) 230, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 163
HpySE526I ACGT 1 cut(s) 624
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 1 cut(s) 792
HspAI GCGC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 4 cut(s) 125, 465, 493, 639
LmnI GCTCC 2 cut(s) 208, 251
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 795, 853
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 3 cut(s) 378, 664, 844
MalI GATC 4 cut(s) 127, 467, 495, 641
MbiI CCGCTC 1 cut(s) 246
MboI GATC 4 cut(s) 125, 465, 493, 639
MboII GAAGA 3 cut(s) 135, 229, 428
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 251, 277, 505
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 8 cut(s) 83, 110, 113, 393, 530, 534, 738, 826
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 2 cut(s) 719, 780
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 6 cut(s) 167, 206, 461, 476, 547, 739
MspR9I CCNGG 4 cut(s) 87, 476, 534, 740
Mva1269I GAATGC 5 cut(s) 37, 211, 458, 629, 806
MvaI CCWGG 2 cut(s) 87, 534
MwoI GCNNNNNNNGC 2 cut(s) 111, 163
NciI CCSGG 2 cut(s) 476, 740
NdeII GATC 4 cut(s) 125, 465, 493, 639
NlaIII CATG 1 cut(s) 792
NlaIV GGNNCC 2 cut(s) 204, 369
NmuCI GTSAC 2 cut(s) 378, 664
NsiI ATGCAT 1 cut(s) 291
PctI GAATGC 5 cut(s) 37, 211, 458, 629, 806
PfeI GAWTC 2 cut(s) 445, 515
PflFI GACNNNGTC 1 cut(s) 358
PkrI GCNGC 4 cut(s) 133, 152, 245, 702
Ppu21I YACGTR 1 cut(s) 625
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 85, 532
PspGI CCWGG 2 cut(s) 85, 532
PspN4I GGNNCC 2 cut(s) 204, 369
PspPI GGNCC 2 cut(s) 367, 747
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 465
PsyI GACNNNGTC 1 cut(s) 358
RsaI GTAC 2 cut(s) 204, 793
RsaNI GTAC 2 cut(s) 203, 792
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 2 cut(s) 719, 780
SatI GCNGC 4 cut(s) 132, 151, 244, 701
Sau3AI GATC 4 cut(s) 125, 465, 493, 639
Sau96I GGNCC 2 cut(s) 367, 747
ScrFI CCNGG 4 cut(s) 87, 476, 534, 740
SduI GDGCHC 1 cut(s) 64
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 161, 384
SmoI CTYRAG 2 cut(s) 161, 384
SpeI ACTAGT 1 cut(s) 794
Sse9I AATT 3 cut(s) 251, 277, 505
SsiI CCGC 6 cut(s) 114, 151, 244, 321, 417, 701
SspMI CTAG 2 cut(s) 795, 853
StyD4I CCNGG 4 cut(s) 85, 474, 532, 738
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 1 cut(s) 627
TasI AATT 3 cut(s) 251, 277, 505
TatI WGTACW 1 cut(s) 791
TauI GCSGC 3 cut(s) 153, 246, 703
TfiI GAWTC 2 cut(s) 445, 515
Tru1I TTAA 2 cut(s) 719, 780
Tru9I TTAA 2 cut(s) 719, 780
TseFI GTSAC 2 cut(s) 378, 664
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 2 cut(s) 378, 664
TspDTI ATGAA 3 cut(s) 84, 89, 777
TspGWI ACGGA 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 531
XspI CTAG 2 cut(s) 795, 853
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.