RchiOBHm_Chr6g0294901

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000424
Physical Location & Seq
Forward (+)
57075314 .. 57077265
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26468

Sequence Viewer

Length: 1005 bp
ATGGCCGCCGTTCCAATTCCTTCAACGATTAACAGCTTGCCGTCTGGGATTGTCGAAGACATTCTTCTACGGCTCTCTCTGAAAGAAATGATCAGATGTAGGACAAATTTTGCTCACTTGGGCCATTTTGCCATCTCTCTCCTGAGAGTTCTCTCACTTGTGTATCTCTATTCGAGGGACAAATTCAGCAGTGCTCGCAAGATTGTGCAACCCTTGGCACACCCTGAGAGAGTGACAGAATTTGTGGGCTGCTGTAATGGTTTGCTGCTCCTGCACAATCGATATCACGATCTAGACCTGGCAATTTGGAATCCGACGATTCAGAAATTCAAAAGAATTCCCTTTGCACCCATTGAGTTGCCGGCTGGGACTCAAAGGACACATACGATGTATGGTTTTGGATATGATCAATCCAGTAGTGACTACAAAATTGTTAGAATTGTGGAATCTGAATCCAACTTATGGAAGAAGATTCAAAGCTTCCCTTACACAGGGAATTCATCTCATTTTTATGCACCTGCCGTTCCTCTAAATGGTGCTATACATTGGCTCGTGACAGATAATTCACATTCCCAAAGTGTAAGAGTTATTGCTCTTGATCTCTCAAAAGAAACTTTCAATGAGTTTTCCACCCCGTTTGCTGATGTCGAAGGCGGAATTGGTTTGGAGGTGTTGGGAGGTAGTCTCTGCATTTGTCTTAATCATTTCAAAACCAGTAATGAAGTCTGGAAAATGAAGGAATATGGAGTGGCTGAATCTTGGGTTCATTTCTATACTGTTGAGTGGAAGGTTGTGAAAAAAGCGTTTGAGTATTGCACAACTTTGGTCTTATCAAAGATTGGTGAAAGGGTTCTTTTGCATAACGACTCTAATTTGACCAAGGGTTTCCTTTTCTGGTATAATTTTGAGACAAACATTGGAAAAGTGGTTAGAATTCCTGGTTCGCCCGCCATTTTAGGGCAGCTATCTGTGCAGCCAACCTTGGTCTCCTTGTTGATTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

334

Amino Acids

37.72

Weight (kDa)

8.79

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 72 - 315 6.4e-14 F-box associated beta propeller domain
FBA_1 PF07734 80 - 276 1.2e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 462
AciI CCGC 3 cut(s) 6, 654, 948
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 7 cut(s) 106, 182, 239, 326, 336, 496, 933
AfiI CCNNNNNNNGG 4 cut(s) 462, 491, 533, 957
AgsI TTSAA 5 cut(s) 24, 331, 476, 619, 709
AjnI CCWGG 2 cut(s) 297, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 3 cut(s) 36, 480, 964
AluI AGCT 3 cut(s) 36, 480, 964
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 3 cut(s) 689, 902, 991
AoxI GGCC 2 cut(s) 3, 121
ApeKI GCWGC 4 cut(s) 249, 265, 961, 973
ApoI RAATTY 7 cut(s) 106, 182, 239, 326, 336, 496, 933
Asp700I GAANNNNTTC 2 cut(s) 60, 849
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 854
BaeI ACNNNNGTAYC 2 cut(s) 146, 179
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 4 cut(s) 236, 252, 973, 985
BccI CCATC 1 cut(s) 140
BceAI ACGGC 3 cut(s) 25, 86, 506
BciT130I CCWGG 2 cut(s) 299, 939
BclI TGATCA 2 cut(s) 90, 406
BcoDI GTCTC 3 cut(s) 689, 902, 991
BfaI CTAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 5 cut(s) 6, 250, 266, 962, 974
BlsI GCNGC 5 cut(s) 7, 251, 267, 963, 975
Bme1390I CCNGG 2 cut(s) 299, 939
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 299, 939
BpiI GAAGAC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 669, 701
Bsa29I ATCGAT 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 991
BsaJI CCNNGG 3 cut(s) 213, 879, 981
Bsc4I CCNNNNNNNGG 4 cut(s) 462, 491, 533, 957
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 414, 714
BseBI CCWGG 2 cut(s) 299, 939
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 3 cut(s) 213, 879, 981
BseLI CCNNNNNNNGG 4 cut(s) 462, 491, 533, 957
BseMII CTCAG 2 cut(s) 134, 216
BseNI ACTGG 2 cut(s) 414, 714
BseXI GCAGC 4 cut(s) 236, 252, 973, 985
BseYI CCCAGC 1 cut(s) 365
BsgI GTGCAG 2 cut(s) 257, 992
BshFI GGCC 2 cut(s) 5, 123
BshVI ATCGAT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 2 cut(s) 191, 382
BslI CCNNNNNNNGG 4 cut(s) 462, 491, 533, 957
BsmAI GTCTC 3 cut(s) 689, 902, 991
BsmFI GGGAC 2 cut(s) 191, 382
BsnI GGCC 2 cut(s) 5, 123
Bso31I GGTCTC 1 cut(s) 991
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 90, 289, 406, 598
BspACI CCGC 3 cut(s) 6, 654, 948
BspANI GGCC 2 cut(s) 5, 123
BspCNI CTCAG 2 cut(s) 135, 217
BspDI ATCGAT 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 526
BspTNI GGTCTC 1 cut(s) 991
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 414, 714
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 213, 879, 981
BssMI GATC 4 cut(s) 90, 289, 406, 598
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 3 cut(s) 213, 879, 981
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 2 cut(s) 299, 939
Bst4CI ACNGT 1 cut(s) 778
BstC8I GCNNGC 4 cut(s) 38, 196, 363, 948
BstDEI CTNAG 2 cut(s) 143, 225
BstENI CCTNNNNNAGG 1 cut(s) 489
BstKTI GATC 4 cut(s) 93, 292, 409, 601
BstMAI GTCTC 3 cut(s) 689, 902, 991
BstMBI GATC 4 cut(s) 90, 289, 406, 598
BstMWI GCNNNNNNNGC 3 cut(s) 195, 271, 970
BstNI CCWGG 2 cut(s) 299, 939
BstSCI CCNGG 2 cut(s) 297, 937
BstV1I GCAGC 4 cut(s) 236, 252, 973, 985
BstV2I GAAGAC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 2 cut(s) 5, 123
BsuTUI ATCGAT 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 4 cut(s) 38, 196, 363, 948
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
DdeI CTNAG 2 cut(s) 143, 225
DpnI GATC 4 cut(s) 92, 291, 408, 600
DpnII GATC 4 cut(s) 90, 289, 406, 598
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 669
Eco130I CCWWGG 3 cut(s) 213, 879, 981
Eco31I GGTCTC 1 cut(s) 991
Eco32I GATATC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoRI GAATTC 3 cut(s) 336, 496, 933
EcoRII CCWGG 2 cut(s) 297, 937
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 3 cut(s) 213, 879, 981
ErhI CCWWGG 3 cut(s) 213, 879, 981
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 469, 501
FaqI GGGAC 2 cut(s) 191, 382
FauI CCCGC 1 cut(s) 955
FbaI TGATCA 2 cut(s) 90, 406
Fnu4HI GCNGC 5 cut(s) 6, 250, 266, 962, 974
Fsp4HI GCNGC 5 cut(s) 6, 250, 266, 962, 974
FspBI CTAG 1 cut(s) 293
GluI GCNGC 5 cut(s) 6, 250, 266, 962, 974
GsaI CCCAGC 1 cut(s) 369
HaeIII GGCC 2 cut(s) 5, 123
HapII CCGG 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 9 cut(s) 310, 319, 370, 446, 452, 472, 755, 866, 997
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 854
Hpy188I TCNGA 5 cut(s) 81, 95, 315, 324, 451
Hpy188III TCNNGA 6 cut(s) 142, 287, 293, 553, 596, 727
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 4 cut(s) 30, 644, 730, 781
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4V TGCA 8 cut(s) 208, 274, 347, 515, 690, 816, 859, 973
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 271, 970
HpyF3I CTNAG 2 cut(s) 143, 225
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Ksp22I TGATCA 2 cut(s) 90, 406
Kzo9I GATC 4 cut(s) 90, 289, 406, 598
LmnI GCTCC 1 cut(s) 273
Lsp1109I GCAGC 4 cut(s) 236, 252, 973, 985
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 3 cut(s) 232, 419, 553
MalI GATC 4 cut(s) 92, 291, 408, 600
MboI GATC 4 cut(s) 90, 289, 406, 598
MboII GAAGA 4 cut(s) 56, 68, 478, 481
MhlI GDGCHC 1 cut(s) 196
MlyI GAGTC 2 cut(s) 364, 860
MmeI TCCRAC 2 cut(s) 338, 480
MnlI CCTC 4 cut(s) 168, 537, 661, 671
MroNI GCCGGC 1 cut(s) 361
MroXI GAANNNNTTC 2 cut(s) 60, 849
MseI TTAA 2 cut(s) 30, 699
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 299, 939
MvaI CCWGG 2 cut(s) 299, 939
MwoI GCNNNNNNNGC 3 cut(s) 195, 271, 970
NaeI GCCGGC 1 cut(s) 363
NdeII GATC 4 cut(s) 90, 289, 406, 598
NgoMIV GCCGGC 1 cut(s) 361
NmuCI GTSAC 3 cut(s) 232, 419, 553
PaqCI CACCTGC 1 cut(s) 526
PdiI GCCGGC 1 cut(s) 363
PdmI GAANNNNTTC 2 cut(s) 60, 849
PfeI GAWTC 7 cut(s) 310, 319, 446, 452, 472, 755, 997
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 5 cut(s) 7, 251, 267, 963, 975
PleI GAGTC 2 cut(s) 364, 860
PpsI GAGTC 2 cut(s) 364, 860
Psp6I CCWGG 2 cut(s) 297, 937
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 297, 937
PspPI GGNCC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 2 cut(s) 30, 699
SatI GCNGC 5 cut(s) 6, 250, 266, 962, 974
Sau3AI GATC 4 cut(s) 90, 289, 406, 598
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 2 cut(s) 364, 860
ScrFI CCNGG 2 cut(s) 299, 939
SduI GDGCHC 1 cut(s) 196
SetI ASST 9 cut(s) 38, 300, 482, 520, 672, 682, 792, 966, 983
SmiMI CAYNNNNRTG 1 cut(s) 510
SsiI CCGC 3 cut(s) 6, 654, 948
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 297, 937
StyI CCWWGG 3 cut(s) 213, 879, 981
TaaI ACNGT 1 cut(s) 778
TaqI TCGA 4 cut(s) 54, 173, 280, 648
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 7 cut(s) 310, 319, 446, 452, 472, 755, 997
Tru1I TTAA 2 cut(s) 30, 699
Tru9I TTAA 2 cut(s) 30, 699
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 3 cut(s) 232, 419, 553
TseI GCWGC 4 cut(s) 249, 265, 961, 973
Tsp45I GTSAC 3 cut(s) 232, 419, 553
TspDTI ATGAA 4 cut(s) 489, 735, 749, 755
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 7 cut(s) 106, 182, 239, 326, 336, 496, 933
XbaI TCTAGA 1 cut(s) 292
XmnI GAANNNNTTC 2 cut(s) 60, 849
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.