Prupe.1G024600_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000424
Physical Location & Seq
Forward (+)
1700309 .. 1701925
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G024600.1

Sequence Viewer

Length: 1143 bp
ATGTCGATCCTCCCACCGGAGCTAATCTTGGACATACTTTTACGGCTTTCGTACAAGGATTTGATACGATCCCTGTGCGTTTCGAAAGCTTGGTATGCTTTCATCCACGACCAACGCTTCATCAAAGCCCATCTCCAACGCTCCATTGAAACCAACTCTGCTCCTCTATCCATTTTAATTTGGTCAGATAACCCCGAAGATGCTCCCTCGGGTTTCTTTTCATTGACCTTTAGGGACAACGAAACGATCGGGGCAGCCGTGAGAACTGAGCAGCCGTTCAAATACGCTGACAATTACACAGACATATTGGGCAACTCTGTTCATGGTGTGGTTTGCATACGCAACTGTGTCGATTGGGAAATTGCTTTGTGGAACCCGTCAATTCAAAAGTTGAAGAAGATTCCCTTCCCAAGCTTTGAGACGCCGAAATTCACTGCTTACTATGGATTCGGGTATGATTCTGTTCATGATGACTATAAAGTTGTGGGAATAGGGGATTGCCATACCGAGAGTTGTCAAGTTCATATTTATAGCCTAAAATCTAACTCATGGAAAAGGATCCAAAACATGCCTTGCAATAATTTTGATTTTCATTCAGATTATATCGTGTTCTTCAACGGTGCTCTAAATTGGCTGATGCACCCGGTGTTAGATGAAACCCCGCACATAATTCAAACTCTTACTCTTACCAGTGAGGAATATTGCCAGTTTTCCACCCCGGTCGATCTGGATGACGTGTATAACATGTATACGCCTACGCTGTCTTTGGAGGTCTTGGGGGGCTGTTTATGTCTCTGTGTTGATCGTTTCGGCGCCGCACATGATGTTTGGGTTATGAAGGAGTATGGAATGACAGAATCTTGGACCCTGCTTTTTTCTATTGAGCCAGAAGCTGTGCCTTGGGTGCATGTTCATTCTTTCAAACCACTGGTGTTGTCAAAGAATGGAGAAATGGTCCTTTTGACTTACAAGTACCACAATTCTGTGTTCTTTTGGTATGATTTAAAGAAAAAGAGTTTCAAACAAGTTGAATTTCGCGGTCATCCCCATGTATCTAAAGTGGCAGTTAGTGGTGTCGGGAGCCTTTATCTTCTTGATCCTGTTATTTCTTGGAAGGGATCGACAAGTCCCCTCTACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

381

Amino Acids

43.62

Weight (kDa)

5.81

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 812
AccI GTMKAC 1 cut(s) 749
AccII CGCG 1 cut(s) 1038
AciI CCGC 3 cut(s) 662, 816, 1038
AclWI GGATC 5 cut(s) 63, 553, 566, 1091, 1126
AcsI RAATTY 2 cut(s) 428, 1031
AcyI GRCGYC 2 cut(s) 422, 813
AdeI CACNNNGTG 1 cut(s) 646
AfaI GTAC 2 cut(s) 53, 974
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 2 cut(s) 735, 744
AgsI TTSAA 9 cut(s) 149, 280, 386, 394, 616, 674, 922, 1021, 1031
AjiI CACGTC 1 cut(s) 736
AluBI AGCT 4 cut(s) 22, 89, 414, 893
AluI AGCT 4 cut(s) 22, 89, 414, 893
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 413, 797
AlwI GGATC 5 cut(s) 63, 553, 566, 1091, 1126
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 254, 271
ApoI RAATTY 2 cut(s) 428, 1031
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 2 cut(s) 864, 955
AsuC2I CCSGG 2 cut(s) 644, 719
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 2 cut(s) 864, 955
BamHI GGATCC 1 cut(s) 558
BanI GGYRCC 1 cut(s) 812
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 266, 283
BccI CCATC 1 cut(s) 138
BceAI ACGGC 3 cut(s) 59, 242, 259
BcgI CGANNNNNNTGC 4 cut(s) 57, 91, 331, 365
BcnI CCSGG 2 cut(s) 644, 719
BcoDI GTCTC 2 cut(s) 413, 797
BfoI RGCGCY 1 cut(s) 816
BisI GCNGC 3 cut(s) 255, 272, 816
BlsI GCNGC 3 cut(s) 256, 273, 817
Bme1390I CCNGG 2 cut(s) 644, 719
Bme18I GGWCC 2 cut(s) 864, 955
BmeT110I CYCGRG 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 864, 955
BmiI GGNNCC 5 cut(s) 374, 560, 814, 866, 1082
BmrFI CCNGG 2 cut(s) 644, 719
BmsI GCATC 2 cut(s) 190, 627
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 644, 719
BsaHI GRCGYC 2 cut(s) 422, 813
BsaJI CCNNGG 3 cut(s) 207, 717, 899
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 3 cut(s) 690, 706, 933
BseDI CCNNGG 3 cut(s) 207, 717, 899
BseGI GGATG 3 cut(s) 102, 736, 1042
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 3 cut(s) 690, 706, 933
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 266, 283
Bsh1236I CGCG 1 cut(s) 1038
Bsh1285I CGRYCG 2 cut(s) 249, 723
BshNI GGYRCC 1 cut(s) 812
BsiEI CGRYCG 2 cut(s) 249, 723
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 3 cut(s) 17, 644, 719
BslFI GGGAC 2 cut(s) 248, 1113
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 413, 797
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 248, 1113
BsoBI CYCGRG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
BspACI CCGC 3 cut(s) 662, 816, 1038
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 1038
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 5 cut(s) 374, 560, 814, 866, 1082
BspPI GGATC 5 cut(s) 63, 553, 566, 1091, 1126
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 812
BsrI ACTGG 3 cut(s) 690, 706, 933
BssECI CCNNGG 3 cut(s) 207, 717, 899
BssMI GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
BssNAI GTATAC 1 cut(s) 750
BssNI GRCGYC 2 cut(s) 422, 813
BssT1I CCWWGG 1 cut(s) 899
Bst1107I GTATAC 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 347, 620
BstACI GRCGYC 2 cut(s) 422, 813
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 102, 736, 1042
BstFNI CGCG 1 cut(s) 1038
BstH2I RGCGCY 1 cut(s) 816
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 8 cut(s) 9, 71, 249, 561, 727, 805, 1099, 1121
BstMAI GTCTC 2 cut(s) 413, 797
BstMBI GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
BstMCI CGRYCG 2 cut(s) 249, 723
BstMWI GCNNNNNNNGC 2 cut(s) 95, 904
BstNSI RCATGY 3 cut(s) 571, 748, 911
BstSCI CCNGG 2 cut(s) 642, 717
BstUI CGCG 1 cut(s) 1038
BstV1I GCAGC 2 cut(s) 266, 283
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BstZ17I GTATAC 1 cut(s) 750
BtrI CACGTC 1 cut(s) 736
BtsCI GGATG 3 cut(s) 102, 736, 1042
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 432, 697, 926
CaiI CAGNNNCTG 1 cut(s) 893
CciI TCATGA 1 cut(s) 466
CfoI GCGC 1 cut(s) 815
Cfr13I GGNCC 2 cut(s) 864, 955
CseI GACGC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 52, 973
CspCI CAANNNNNGTGG 2 cut(s) 915, 950
CviAII CATG 8 cut(s) 323, 467, 549, 568, 745, 821, 908, 1049
CviQI GTAC 2 cut(s) 52, 973
DdeI CTNAG 1 cut(s) 267
DinI GGCGCC 1 cut(s) 814
DpnI GATC 8 cut(s) 8, 70, 248, 560, 726, 804, 1098, 1120
DpnII GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
DraI TTTAAA 1 cut(s) 1005
DraIII CACNNNGTG 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 899
Eco47I GGWCC 2 cut(s) 864, 955
Eco88I CYCGRG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 899
EgeI GGCGCC 1 cut(s) 814
EheI GGCGCC 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 899
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 8 cut(s) 326, 470, 552, 571, 748, 824, 911, 1052
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 2 cut(s) 248, 1113
FatI CATG 8 cut(s) 322, 466, 548, 567, 744, 820, 907, 1048
FauI CCCGC 1 cut(s) 669
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 3 cut(s) 255, 272, 816
FokI GGATG 3 cut(s) 89, 743, 1029
Fsp4HI GCNGC 3 cut(s) 255, 272, 816
GlaI GCGC 1 cut(s) 814
GluI GCNGC 3 cut(s) 255, 272, 816
HaeII RGCGCY 1 cut(s) 816
HapII CCGG 3 cut(s) 17, 644, 719
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 815
Hin1I GRCGYC 2 cut(s) 422, 813
Hin1II CATG 8 cut(s) 326, 470, 552, 571, 748, 824, 911, 1052
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HindIII AAGCTT 2 cut(s) 87, 412
HinfI GANTC 4 cut(s) 400, 447, 458, 857
HpaII CCGG 3 cut(s) 17, 644, 719
Hpy166II GTNNAC 1 cut(s) 750
Hpy188I TCNGA 2 cut(s) 187, 598
Hpy188III TCNNGA 4 cut(s) 467, 728, 1078, 1094
Hpy8I GTNNAC 1 cut(s) 750
HpyAV CCTTC 3 cut(s) 415, 832, 1108
HpyCH4III ACNGT 2 cut(s) 347, 620
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 4 cut(s) 336, 576, 640, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 904
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 2 cut(s) 422, 813
Hsp92II CATG 8 cut(s) 326, 470, 552, 571, 748, 824, 911, 1052
HspAI GCGC 1 cut(s) 813
KasI GGCGCC 1 cut(s) 812
Kzo9I GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
LmnI GCTCC 5 cut(s) 19, 146, 166, 208, 1080
Lsp1109I GCAGC 2 cut(s) 266, 283
LweI GCATC 2 cut(s) 190, 627
MaeII ACGT 1 cut(s) 735
MalI GATC 8 cut(s) 8, 70, 248, 560, 726, 804, 1098, 1120
MboI GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
MboII GAAGA 5 cut(s) 209, 406, 409, 604, 1082
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 625
Mly113I GGCGCC 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 6 cut(s) 20, 174, 217, 688, 763, 1142
MseI TTAA 2 cut(s) 176, 1004
MslI CAYNNNNRTG 1 cut(s) 1047
MspI CCGG 3 cut(s) 17, 644, 719
MspR9I CCNGG 2 cut(s) 644, 719
MvnI CGCG 1 cut(s) 1038
MwoI GCNNNNNNNGC 2 cut(s) 95, 904
NarI GGCGCC 1 cut(s) 813
NciI CCSGG 2 cut(s) 644, 719
NdeII GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
NlaIII CATG 8 cut(s) 326, 470, 552, 571, 748, 824, 911, 1052
NlaIV GGNNCC 5 cut(s) 374, 560, 814, 866, 1082
NspI RCATGY 3 cut(s) 571, 748, 911
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 1 cut(s) 466
PciI ACATGT 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 4 cut(s) 400, 447, 458, 857
PkrI GCNGC 3 cut(s) 256, 273, 817
Ple19I CGATCG 1 cut(s) 249
PluTI GGCGCC 1 cut(s) 816
PscI ACATGT 1 cut(s) 744
PspN4I GGNNCC 5 cut(s) 374, 560, 814, 866, 1082
PspPI GGNCC 2 cut(s) 864, 955
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 1 cut(s) 558
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 2 cut(s) 53, 974
RsaNI GTAC 2 cut(s) 52, 973
RseI CAYNNNNRTG 1 cut(s) 1047
SaqAI TTAA 2 cut(s) 176, 1004
SatI GCNGC 3 cut(s) 255, 272, 816
Sau3AI GATC 8 cut(s) 6, 68, 246, 558, 724, 802, 1096, 1118
Sau96I GGNCC 2 cut(s) 864, 955
ScrFI CCNGG 2 cut(s) 644, 719
SduI GDGCHC 1 cut(s) 625
SetI ASST 8 cut(s) 24, 91, 230, 416, 738, 774, 895, 1140
SfaNI GCATC 2 cut(s) 190, 627
SfoI GGCGCC 1 cut(s) 814
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 864, 955
SmiMI CAYNNNNRTG 1 cut(s) 1047
SsiI CCGC 3 cut(s) 662, 816, 1038
SspDI GGCGCC 1 cut(s) 812
SspI AATATT 1 cut(s) 701
StyD4I CCNGG 2 cut(s) 642, 717
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 2 cut(s) 347, 620
TaiI ACGT 1 cut(s) 738
TaqI TCGA 5 cut(s) 5, 83, 351, 723, 1121
TauI GCSGC 1 cut(s) 818
TfiI GAWTC 4 cut(s) 400, 447, 458, 857
Tru1I TTAA 2 cut(s) 176, 1004
Tru9I TTAA 2 cut(s) 176, 1004
TscAI CASTG 3 cut(s) 439, 697, 933
TseI GCWGC 2 cut(s) 254, 271
TspRI CASTG 3 cut(s) 439, 697, 933
VpaK11BI GGWCC 2 cut(s) 864, 955
XapI RAATTY 2 cut(s) 428, 1031
XceI RCATGY 3 cut(s) 571, 748, 911
XmiI GTMKAC 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.