Rh7CG032800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000424
Physical Location & Seq
Reverse (-)
2250032 .. 2250562
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG032800.1

Sequence Viewer

Length: 531 bp
ATGTCGCCAGAAAACAATGGCATGAAGTCCAACTGTGGCAGCCTGCTTCTAGTCATCATCAGTGGGAGGGCCGTGGTTGTAGGTGACACTATCTATACCTTTGATACTTGTAACAGTGTTGTGGCATTCAAATTTTGGTGGGATTTGGATCAGGATGGTGATGCTACTTTTTATATAAGCCCTCAACCTAATTTGGAAGCCTTGCATATCAACAAGGCCTTTCTGGCGCAAACAGGTCGTTATAAGTTCAAAGAAACTAGACAAGGATATTTGGTTCACTTGGGGAACTTGGATTTTTGTCTCGTCCTAAATCGGTTCAGAAAAAATAGAGCTGATCCTGATCTTCAACAAAAACACCGTATCACCACGTTTCAAGTTGTGGATCCTCAACAAAAACACTGTATCACCACGTTTCAAGTTGTGGACGATGAATGGGGAGGGAAGCATATCATCAAGACCTTACATTCAACTATTTGTGAGGTGGACGTACTCTTTCATTCGTTTCGGTTTCAGCTTTACTCCAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.3

Weight (kDa)

7.69

Isoelectric Point (pI)

28.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AclWI GGATC 4 cut(s) 156, 329, 377, 390
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 489
AgsI TTSAA 6 cut(s) 130, 250, 347, 374, 416, 468
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 332, 514
AluI AGCT 2 cut(s) 332, 514
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 4 cut(s) 156, 329, 377, 390
AoxI GGCC 2 cut(s) 69, 216
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 4 cut(s) 95, 170, 355, 397
BamHI GGATCC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 50, 258
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 384
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 505
BsaBI GATNNNNATC 2 cut(s) 147, 339
BsaJI CCNNGG 1 cut(s) 72
Bse8I GATNNNNATC 2 cut(s) 147, 339
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 2 cut(s) 147, 339
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 2 cut(s) 71, 218
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 2 cut(s) 71, 218
Bsp143I GATC 4 cut(s) 148, 334, 340, 382
BspANI GGCC 2 cut(s) 71, 218
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 4 cut(s) 156, 329, 377, 390
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 148, 334, 340, 382
Bst4CI ACNGT 4 cut(s) 35, 116, 359, 401
BstC8I GCNNGC 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 151, 337, 343, 385
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 148, 334, 340, 382
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 2 cut(s) 71, 218
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 67, 121, 397
Cac8I GCNNGC 1 cut(s) 44
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 488
CviAII CATG 1 cut(s) 22
CviJI RGCY 7 cut(s) 42, 71, 180, 200, 218, 332, 514
CviKI_1 RGCY 7 cut(s) 42, 71, 180, 200, 218, 332, 514
CviQI GTAC 1 cut(s) 488
DpnI GATC 4 cut(s) 150, 336, 342, 384
DpnII GATC 4 cut(s) 148, 334, 340, 382
Eco147I AGGCCT 1 cut(s) 218
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 96, 174, 176, 207, 243, 447
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 50, 258
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 2 cut(s) 71, 218
HhaI GCGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HphI GGTGA 4 cut(s) 95, 170, 355, 397
Hpy166II GTNNAC 3 cut(s) 277, 424, 484
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 4 cut(s) 152, 338, 454, 522
Hpy8I GTNNAC 3 cut(s) 277, 424, 484
HpyCH4III ACNGT 4 cut(s) 35, 116, 359, 401
HpyCH4IV ACGT 3 cut(s) 368, 410, 486
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpySE526I ACGT 3 cut(s) 368, 410, 486
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 4 cut(s) 148, 334, 340, 382
LpnPI CCDG 6 cut(s) 21, 56, 137, 209, 219, 351
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 50, 258
MaeII ACGT 3 cut(s) 368, 410, 486
MaeIII GTNAC 2 cut(s) 83, 110
MalI GATC 4 cut(s) 150, 336, 342, 384
MboI GATC 4 cut(s) 148, 334, 340, 382
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 382
MluCI AATT 2 cut(s) 131, 190
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 60, 192, 396, 431, 472
Mva1269I GAATGC 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 4 cut(s) 148, 334, 340, 382
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 83
PceI AGGCCT 1 cut(s) 218
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 41
PsiI TTATAA 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 4 cut(s) 148, 334, 340, 382
Sau96I GGNCC 1 cut(s) 69
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 2 cut(s) 131, 190
SseBI AGGCCT 1 cut(s) 218
SspMI CTAG 2 cut(s) 50, 258
StuI AGGCCT 1 cut(s) 218
TaaI ACNGT 4 cut(s) 35, 116, 359, 401
TaiI ACGT 3 cut(s) 371, 413, 489
TasI AATT 2 cut(s) 131, 190
TscAI CASTG 3 cut(s) 67, 121, 404
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 38, 444, 485
TspRI CASTG 3 cut(s) 67, 121, 404
XapI RAATTY 1 cut(s) 131
XspI CTAG 2 cut(s) 50, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.