Rroxscaffold_2G00081970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000424
Physical Location & Seq
Reverse (-)
4886265 .. 4889107
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081970.1

Sequence Viewer

Length: 246 bp
ATGCCTCATGGCCAGTCCCAAATAGTAAAGGCAGCAATGCCGCTCTACAAGGGAAGGGAATATGAGGCCGCCCTTCTAGGAGATACTAGTACAAGCACCGTCAACAATACCTGCCGTGCCATTCTTCCCATTTTTCCTACATTAGCTAATGGATCAGCTGACAAATTTGCATCATTAAAGAGATGCTTTCCCTTCGGCCTCTGTTTAGAATTTGAATATTCCTTCCTCTCCCTCAGTTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.96

Weight (kDa)

7.74

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 43
AciI CCGC 2 cut(s) 41, 69
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 2 cut(s) 164, 209
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 1 cut(s) 215
AhlI ACTAGT 1 cut(s) 86
AluBI AGCT 2 cut(s) 146, 158
AluI AGCT 2 cut(s) 146, 158
AlwI GGATC 1 cut(s) 160
AoxI GGCC 3 cut(s) 10, 66, 196
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 164, 209
BalI TGGCCA 1 cut(s) 12
BbvI GCAGC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 2 cut(s) 77, 87
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 3 cut(s) 33, 41, 69
BlsI GCNGC 3 cut(s) 34, 42, 70
BmsI GCATC 2 cut(s) 173, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 3 cut(s) 12, 68, 198
BslI CCNNNNNNNGG 1 cut(s) 237
BsnI GGCC 3 cut(s) 12, 68, 198
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 2 cut(s) 41, 69
BspANI GGCC 3 cut(s) 12, 68, 198
BspCNI CTCAG 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 13
BssMI GATC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 233
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 44
BsuRI GGCC 3 cut(s) 12, 68, 198
BveI ACCTGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 12, 68, 146, 158, 198
CviKI_1 RGCY 5 cut(s) 12, 68, 146, 158, 198
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 233
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 10
FaeI CATG 1 cut(s) 11
FaiI YATR 2 cut(s) 9, 63
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 33, 41, 69
Fsp4HI GCNGC 3 cut(s) 33, 41, 69
FspBI CTAG 2 cut(s) 77, 87
GluI GCNGC 3 cut(s) 33, 41, 69
HaeIII GGCC 3 cut(s) 12, 68, 198
Hin1II CATG 1 cut(s) 11
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 48, 83, 202, 232
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 233
Hsp92II CATG 1 cut(s) 11
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 2 cut(s) 26, 124
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 2 cut(s) 173, 179
MaeI CTAG 2 cut(s) 77, 87
MalI GATC 1 cut(s) 154
MbiI CCGCTC 1 cut(s) 43
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 2 cut(s) 164, 209
MluNI TGGCCA 1 cut(s) 12
MnlI CCTC 5 cut(s) 15, 58, 209, 236, 242
Mox20I TGGCCA 1 cut(s) 12
MscI TGGCCA 1 cut(s) 12
MseI TTAA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 158
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 11
PkrI GCNGC 3 cut(s) 34, 42, 70
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 33, 41, 69
Sau3AI GATC 1 cut(s) 152
SetI ASST 3 cut(s) 113, 148, 160
SfaNI GCATC 2 cut(s) 173, 179
SgeI CNNG 8 cut(s) 20, 25, 61, 89, 99, 105, 123, 128
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 2 cut(s) 164, 209
SsiI CCGC 2 cut(s) 41, 69
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 77, 87
TaaI ACNGT 1 cut(s) 100
TasI AATT 2 cut(s) 164, 209
TatI WGTACW 1 cut(s) 89
TauI GCSGC 2 cut(s) 43, 71
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 32
XapI RAATTY 2 cut(s) 164, 209
XspI CTAG 2 cut(s) 77, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.