Prupe.3G094200_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000424
Physical Location & Seq
Forward (+)
7058840 .. 7061278
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G094200.1

Sequence Viewer

Length: 822 bp
ATGCCAGACCTCCCGGCAGAACTGTGGATCAACATCCTCGCACGACTCTCAACCAAGGAGTTGGTGCGATTGACGTGCGTTTCTAAAGAATGGAACGATACCATCCAAGATCCACAGTTGGCCATAATGCAATTCCAGCGCTCCATCAAAACCAAATCCCATCCCACAATTTTTATTATCCCATATAGCCCGATCATGTCCTGTTATTTTTCACTCAACTTTTTCAACGACACTACCTACGGTGGATTCGGGTATGATTCGGTCAATGATGACTATAAATTGGTGAGTTTCATGGACTGTGGTACGTATTGCTTAGTACACATGTATAGCCTAAAATCTCGTACGTGGAAAAGAATTCAAGACTTGCCTCTCAAAAAATTTGTAGTTCACTCAATGGGTGTGTTCTTGAAGGGTACTTTGCATTGGTTGATGCATCACGAAATAGACGATGAACCGATCATAATTGGAACCCTTGATCTCGTAAGCGAGGAGTTTTGCCAGTTTACTTTACCCATCCATATGTTTCATGGAGACATATCTGATAAGAATTCTATTAGGTTTAATTTAGTAGTGGTGGAAGGGTATTTATGTATTTATCGAAAAGAGTGTGGAAGTACGGCTTGGATTATGAGAGAATACGGAGTGGCTGAATCTTGGACTATGCTTTATTCAATTGATAATAACTGGATTGACGGTTGCAAGCCTTTAATGCTTTCAAGTTGTGAATTTGAAATGTATTTTTACGCAAACAAGAACGATGGCTTCTCCAGCAAAAAAATAATATTAAACGATGGCTCCTGGAAAATTATGGGGGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

274

Amino Acids

31.74

Weight (kDa)

5.6

Isoelectric Point (pI)

35.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32600 AT1G54640
fragaria_vesca FvH4_2g26290 FvH4_2g26290 FvH4_2g26300 FvH4_5g16160 FvH4_6g49561 FvH4_6g49581
malus_domestica MD02G1261500.v1.1 MD02G1290400.v1.1 MD02G1290700.v1.1 MD02G1290800.v1.1 MD05G1183700.v1.1 MD07G1058700.v1.1 MD07G1058900.v1.1 MD07G1059200.v1.1 MD08G1079300.v1.1 MD08G1079600.v1.1 MD16G1218300.v1.1 MD16G1218400.v1.1 MD16G1218600.v1.1 MD16G1218700.v1.1 MD17G1102900.v1.1
prunus_persica Prupe.1G024400_v2.0.a1 Prupe.1G024500_v2.0.a1 Prupe.1G024600_v2.0.a1 Prupe.1G024800_v2.0.a1 Prupe.1G025300_v2.0.a1 Prupe.1G025400_v2.0.a1 Prupe.1G556300_v2.0.a1 Prupe.3G094100_v2.0.a1 Prupe.3G094200_v2.0.a1
pyrus_communis pycom02g22350 pycom05g27240 pycom07g04530 pycom07g04540 pycom08g06570 pycom10g07370 pycom16g17130 pycom16g17140 pycom16g17150 pycom16g17160 pycom16g17180 pycom17g09720
rosa_chinensis RchiOBHm_Chr6g0294901 RchiOBHm_Chr7g0179991 RchiOBHm_Chr7g0180101 RchiOBHm_Chr7g0180241
rosa_laevigata RLG00000005281 RLG00000005282 RLG00000005293 RLG00000005304 RLG00000011829 RLG00000011831 RLG00000011832 RLG00000021887
rosa_multiflora Rmu_co8519977.1_g000001 Rmu_sc0008966.1_g000002 Rmu_sc0008966.1_g000003 Rmu_sc0008966.1_g000008 Rmu_sc0011963.1_g000010 Rmu_ssc0000119.1_g000012 Rmu_ssc0000119.1_g000032
rosa_roxburghii Rroxscaffold_2G00081970 Rroxscaffold_2G00081980 Rroxscaffold_3G00273030 Rroxscaffold_3G00273250 Rroxscaffold_7G00172880 Rroxscaffold_7G00172900
rosa_rugosa Rorug02G0541400 Rorug06G0429600
rosa_samantha Rh2AG613800 Rh2CG595200 Rh2CG595300 Rh6AG361300 Rh6BG368000 Rh6BG368100 Rh6BG368300 Rh6BG368500 Rh6BG368600 Rh6CG375200 Rh6CG375300 Rh7AG030100 Rh7AG031000 Rh7AG032000 Rh7BG029400 Rh7BG029500 Rh7BG032100 Rh7CG031100 Rh7CG032700 Rh7CG032800 Rh7CG033900 Rh7DG030400 Rh7DG032400
rosa_wichuraiana Rw7G002420 Rw7G002670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 35, 104
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 4 cut(s) 354, 377, 547, 725
AfaI GTAC 5 cut(s) 304, 318, 343, 415, 616
AfeI AGCGCT 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 6 cut(s) 226, 359, 409, 672, 717, 731
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 797
AjuI GAANNNNNNNTTGG 2 cut(s) 604, 636
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 2 cut(s) 35, 104
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 120
ApoI RAATTY 4 cut(s) 354, 377, 547, 725
AspLEI GCGC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 295
BalI TGGCCA 1 cut(s) 122
BccI CCATC 6 cut(s) 110, 152, 168, 521, 752, 785
BceAI ACGGC 1 cut(s) 633
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 799
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 14, 799
BmgBI CACGTC 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 469, 796
BmrFI CCNGG 2 cut(s) 14, 799
BmsI GCATC 2 cut(s) 420, 442
BpmI CTGGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 2 cut(s) 306, 345
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bse1I ACTGG 2 cut(s) 499, 689
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 4 cut(s) 33, 102, 160, 513
BseJI GATNNNNATC 1 cut(s) 32
BseNI ACTGG 2 cut(s) 499, 689
BseRI GAGGAG 1 cut(s) 503
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 14
BsiWI CGTACG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 525
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 5 cut(s) 27, 109, 192, 456, 475
BspANI GGCC 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 469, 796
BspPI GGATC 2 cut(s) 35, 104
BsrI ACTGG 2 cut(s) 499, 689
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 5 cut(s) 27, 109, 192, 456, 475
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 5 cut(s) 24, 117, 242, 299, 695
BstBAI YACGTR 2 cut(s) 306, 345
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 1 cut(s) 313
BstF5I GGATG 4 cut(s) 33, 102, 160, 513
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 5 cut(s) 30, 112, 195, 459, 478
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 5 cut(s) 27, 109, 192, 456, 475
BstMWI GCNNNNNNNGC 3 cut(s) 136, 709, 768
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 12, 797
BstSNI TACGTA 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 122
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 4 cut(s) 33, 102, 160, 513
Cac8I GCNNGC 1 cut(s) 701
CfoI GCGC 1 cut(s) 141
Csp6I GTAC 5 cut(s) 303, 317, 342, 414, 615
CviAII CATG 4 cut(s) 196, 292, 322, 527
CviJI RGCY 8 cut(s) 122, 189, 330, 620, 647, 703, 762, 795
CviKI_1 RGCY 8 cut(s) 122, 189, 330, 620, 647, 703, 762, 795
CviQI GTAC 5 cut(s) 303, 317, 342, 414, 615
DdeI CTNAG 1 cut(s) 313
DpnI GATC 5 cut(s) 29, 111, 194, 458, 477
DpnII GATC 5 cut(s) 27, 109, 192, 456, 475
EaeI YGGCCR 1 cut(s) 120
Eco105I TACGTA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 354, 547
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 4 cut(s) 199, 295, 325, 530
FalI AAGNNNNNCTT 2 cut(s) 604, 636
FatI CATG 4 cut(s) 195, 291, 321, 526
FauNDI CATATG 1 cut(s) 519
FokI GGATG 4 cut(s) 20, 89, 147, 500
GlaI GCGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 751
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 199, 295, 325, 530
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 5 cut(s) 45, 246, 257, 650, 815
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 3 cut(s) 319, 388, 504
Hpy188I TCNGA 1 cut(s) 541
Hpy188III TCNNGA 4 cut(s) 359, 406, 437, 819
Hpy8I GTNNAC 3 cut(s) 319, 388, 504
HpyAV CCTTC 2 cut(s) 403, 572
HpyCH4III ACNGT 5 cut(s) 24, 117, 242, 299, 695
HpyCH4IV ACGT 3 cut(s) 74, 305, 344
HpyCH4V TGCA 4 cut(s) 130, 421, 433, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 709, 768
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 3 cut(s) 74, 305, 344
Hsp92II CATG 4 cut(s) 199, 295, 325, 530
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 5 cut(s) 27, 109, 192, 456, 475
LmnI GCTCC 2 cut(s) 146, 800
LpnPI CCDG 9 cut(s) 18, 27, 149, 214, 512, 670, 781, 784, 811
LweI GCATC 2 cut(s) 420, 442
MaeII ACGT 3 cut(s) 74, 305, 344
MalI GATC 5 cut(s) 29, 111, 194, 458, 477
MboI GATC 5 cut(s) 27, 109, 192, 456, 475
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 2 cut(s) 39, 809
MnlI CCTC 4 cut(s) 20, 47, 378, 481
Mox20I TGGCCA 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 435
MscI TGGCCA 1 cut(s) 122
MseI TTAA 3 cut(s) 561, 707, 785
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 14, 799
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 3 cut(s) 136, 709, 768
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 519
NdeII GATC 5 cut(s) 27, 109, 192, 456, 475
NlaIII CATG 4 cut(s) 199, 295, 325, 530
NlaIV GGNNCC 2 cut(s) 469, 796
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PfeI GAWTC 3 cut(s) 246, 257, 650
Pfl23II CGTACG 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 797
PleI GAGTC 2 cut(s) 39, 809
PpsI GAGTC 2 cut(s) 39, 809
Ppu21I YACGTR 2 cut(s) 306, 345
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 797
PspLI CGTACG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 469, 796
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 5 cut(s) 304, 318, 343, 415, 616
RsaNI GTAC 5 cut(s) 303, 317, 342, 414, 615
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 3 cut(s) 561, 707, 785
Sau3AI GATC 5 cut(s) 27, 109, 192, 456, 475
SchI GAGTC 2 cut(s) 39, 809
ScrFI CCNGG 2 cut(s) 14, 799
SetI ASST 6 cut(s) 12, 77, 239, 308, 347, 560
SfaNI GCATC 2 cut(s) 420, 442
SmiMI CAYNNNNRTG 1 cut(s) 518
SnaBI TACGTA 1 cut(s) 306
SspI AATATT 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 12, 797
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 5 cut(s) 24, 117, 242, 299, 695
TaiI ACGT 3 cut(s) 77, 308, 347
TaqI TCGA 1 cut(s) 598
TaqII GACCGA 1 cut(s) 250
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 3 cut(s) 246, 257, 650
Tru1I TTAA 3 cut(s) 561, 707, 785
Tru9I TTAA 3 cut(s) 561, 707, 785
TspDTI ATGAA 3 cut(s) 280, 465, 515
TspGWI ACGGA 1 cut(s) 654
XapI RAATTY 4 cut(s) 354, 377, 547, 725
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.